jgi.p|Nanoce1779_2|577481, mRNA_496 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577481
Unique Name	mRNA_496
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2139
Alignment location	scaffold_3:1201587..1203725 -

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Properties


Property Name	Value
TranscriptId	577567
Track	FilteredModels2
ProteinId	577481

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1201587..1203725 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577481	gene_496	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577481	mRNA_496-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_496	CDS_496	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1201587..1203725-
coding sequence from alignment at scaffold_3:1201587..1203725-

mRNA sequence

>mRNA_496 ID=mRNA_496|Name=jgi.p|Nanoce1779_2|577481|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp
TCTCCCAAGCGAGCCTCAACCCTACCCTCTTATCACATGAGCCCGAAACC
GCAGCACAATACCACAGCTTCAATTTCTTTCACACATTTGCACTACTATT
TCAGGAAGGACGTTTTTGTGCTGGCAGTTCCTGGACCGACAGGCAAGGCA
GCAACCACCAGACACTAGCTGGTGTATAGGTGTATACGTACCCCATCTAC
TAGCCGTTCCCCATCGAGACAGAGATAGATAAATGCCCGTGGCGGCCGTG
AGTGGGCGCCACTTCCTCCTCTTGACACACGCTTGCTTTATTGTCATGCT
GCTGCGCCCCCCAAGCTCGACGCTGGCGCGGACGGGGCTTGGTGGCTTTT
GTATCGCATTCCGGATACCACCACTACCGCGCGCCGCCCATGCAGCATTC
TTGCCCACCATTCCCACGGGACGAAGGGATATAATGTCTCCTTCGTCTCC
CATCTCCTTTTTTTCATCGACTCCTGCCTCTTCCAACGAAGAAAGTAGCC
CAAGAGCCCCACCTACTGAACACACTGGCACTAGCACGACACGCCGACGT
AAACGATCCAAGAGCGGCGCGGGCGGCCCTAAGCTCTCCCGTGAGTTTGT
GGGCATCGCAAAGGCTACCGACACCGGTCGTTTCCGGACGTATTCAGCCG
ATCAATTCAAAAAAGGCGCATCTGGCTTGCCTGTCACCAGTCCTGAGCGC
CCTTATTTTACTGTGTTGGGTATTGAGACGAGCTGTGATGACACTGGTGT
GGCCGTGGTGAGGTCCGATGGAGTTATCCTCGGAGAAGCCCTCGCCTCTC
AATACCAGATTCATGAGCAATGGGGTGGCGTGGTACCTGGATTGGCGAGA
GACGCACATGCGTCCGTGATTGATAGCATGGTGCAGGAGGCGTTGAGCAA
GGCAGGCATGGCGTCGGTAGGGGAGGTTGATGCGATAGGGGTGACTGTTG
GGCCGGGGCTGGAGATATGTTTAAGGGTGGGGTGTGAGACGGCCAAGGGG
CTGGCAGAGCTACATAAAAAACCATTTGTGGCCGTGCATCACTTGGAGGC
GCATTGTCTGATGGCGCGATTGGGGCAGCCGGTGGTCGAGGTCGAGGAGG
TGGAGGAGGGGGCGCAGGTGGAAGGGAAGAAGGTCACTTCGCCTTCGGCT
TGCTTTCCTTTTCTGGCTTTGCTTGTCTCAGGGGGACATTGTATGATTCT
AGAGTGTGCGAATGTGGGTCGATACCGAGTCCTTGGGGGCACATTAGACG
ATGCATTGGGAGAGGCATACGACAAAGCAGCGCGACTGCTGGAGGTGGGC
TCGGGGGCTGCCGGTGGACCTGCCATGGAGCTTTTAGCGAGGGAAGGAGA
CCCTACCGCGGTACTATTACCAGTCCCTATGAAGGGAAAGAAGGATTTGA
ATTTTTCGTATGCCGGTTTGAAGAATGCGTTCAGAATGGCCGTTACAAGG
GTGATCGAATCCCAGAGGAAGGGCGAGGGAGGGGGGGAGAAAGGGGGGAA
GTTGGACCACCAGACGAAAGCGGACTTGGCGGCATCGTTTCAGAGTGTGG
CAATTGAACACCTGGAGGATCGGTTGGAAAGGGCGATGAAGGAGAGTGAG
GGAAGGGGGATTCGAACATTGGCGGTGGTGGGAGGAGTGGCGGCGAATCA
CGCGATACGGACACGACTGTGGGCCTTGTGTGAAAAGAGGAGTGTAGCGA
GGATGAGGGAGGTGGAAGAGAAGAGGGCATGGGTGGAGGAAATGGAAGGT
GATGGAGATGCTGCTGCTGCGGCCGCTATTGCTGTTGCGGATAAGTTGCC
TGCGTGGGAGTTGGTGGTGCCTCCGCCACGATTGTGCACAGACAATGGGG
TAATGGTTGCGTGGGCGGCAATTGAGAAACTGAGATTGGGCTTCTCGGAT
GTCTTGCAAGGACAGGACGTGCATGCGCGGTGGCCGTTTGCCAATTTGGA
TAAGAGGAAAGAAGATGAGATGGAGGAGCTGGTGGAGGGAGGAGGGGGTA
GGCCATGACGGCTCGATATGATAGAATGGGTCCCAAAATTATCAGACGAG
GGAATAATGTGACTTTTGAATTCTTATATAGATAACAACAAAGGAAACGA
GCTAGAAGCTTGCAAAGTATGAAATGACGCAACAAACTA

protein sequence of jgi.p|Nanoce1779_2|577481

>mRNA_496-protein ID=mRNA_496-protein|Name=jgi.p|Nanoce1779_2|577481|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MPVAAVSGRHFLLLTHACFIVMLLRPPSSTLARTGLGGFCIAFRIPPLPR
AAHAAFLPTIPTGRRDIMSPSSPISFFSSTPASSNEESSPRAPPTEHTGT
STTRRRKRSKSGAGGPKLSREFVGIAKATDTGRFRTYSADQFKKGASGLP
VTSPERPYFTVLGIETSCDDTGVAVVRSDGVILGEALASQYQIHEQWGGV
VPGLARDAHASVIDSMVQEALSKAGMASVGEVDAIGVTVGPGLEICLRVG
CETAKGLAELHKKPFVAVHHLEAHCLMARLGQPVVEVEEVEEGAQVEGKK
VTSPSACFPFLALLVSGGHCMILECANVGRYRVLGGTLDDALGEAYDKAA
RLLEVGSGAAGGPAMELLAREGDPTAVLLPVPMKGKKDLNFSYAGLKNAF
RMAVTRVIESQRKGEGGGEKGGKLDHQTKADLAASFQSVAIEHLEDRLER
AMKESEGRGIRTLAVVGGVAANHAIRTRLWALCEKRSVARMREVEEKRAW
VEEMEGDGDAAAAAAIAVADKLPAWELVVPPPRLCTDNGVMVAWAAIEKL
RLGFSDVLQGQDVHARWPFANLDKRKEDEMEELVEGGGGRP*

mRNA from alignment at scaffold_3:1201587..1203725-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_496 ID=mRNA_496|Name=jgi.p|Nanoce1779_2|577481|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp|location=Sequence derived from alignment at scaffold_3:1201587..1203725- (Nannochloropsis oceanica)
TCTCCCAAGCGAGCCTCAACCCTACCCTCTTATCACATGAGCCCGAAACC
GCAGCACAATACCACAGCTTCAATTTCTTTCACACATTTGCACTACTATT
TCAGGAAGGACGTTTTTGTGCTGGCAGTTCCTGGACCGACAGGCAAGGCA
GCAACCACCAGACACTAGCTGGTGTATAGGTGTATACGTACCCCATCTAC
TAGCCGTTCCCCATCGAGACAGAGATAGATAAATGCCCGTGGCGGCCGTG
AGTGGGCGCCACTTCCTCCTCTTGACACACGCTTGCTTTATTGTCATGCT
GCTGCGCCCCCCAAGCTCGACGCTGGCGCGGACGGGGCTTGGTGGCTTTT
GTATCGCATTCCGGATACCACCACTACCGCGCGCCGCCCATGCAGCATTC
TTGCCCACCATTCCCACGGGACGAAGGGATATAATGTCTCCTTCGTCTCC
CATCTCCTTTTTTTCATCGACTCCTGCCTCTTCCAACGAAGAAAGTAGCC
CAAGAGCCCCACCTACTGAACACACTGGCACTAGCACGACACGCCGACGT
AAACGATCCAAGAGCGGCGCGGGCGGCCCTAAGCTCTCCCGTGAGTTTGT
GGGCATCGCAAAGGCTACCGACACCGGTCGTTTCCGGACGTATTCAGCCG
ATCAATTCAAAAAAGGCGCATCTGGCTTGCCTGTCACCAGTCCTGAGCGC
CCTTATTTTACTGTGTTGGGTATTGAGACGAGCTGTGATGACACTGGTGT
GGCCGTGGTGAGGTCCGATGGAGTTATCCTCGGAGAAGCCCTCGCCTCTC
AATACCAGATTCATGAGCAATGGGGTGGCGTGGTACCTGGATTGGCGAGA
GACGCACATGCGTCCGTGATTGATAGCATGGTGCAGGAGGCGTTGAGCAA
GGCAGGCATGGCGTCGGTAGGGGAGGTTGATGCGATAGGGGTGACTGTTG
GGCCGGGGCTGGAGATATGTTTAAGGGTGGGGTGTGAGACGGCCAAGGGG
CTGGCAGAGCTACATAAAAAACCATTTGTGGCCGTGCATCACTTGGAGGC
GCATTGTCTGATGGCGCGATTGGGGCAGCCGGTGGTCGAGGTCGAGGAGG
TGGAGGAGGGGGCGCAGGTGGAAGGGAAGAAGGTCACTTCGCCTTCGGCT
TGCTTTCCTTTTCTGGCTTTGCTTGTCTCAGGGGGACATTGTATGATTCT
AGAGTGTGCGAATGTGGGTCGATACCGAGTCCTTGGGGGCACATTAGACG
ATGCATTGGGAGAGGCATACGACAAAGCAGCGCGACTGCTGGAGGTGGGC
TCGGGGGCTGCCGGTGGACCTGCCATGGAGCTTTTAGCGAGGGAAGGAGA
CCCTACCGCGGTACTATTACCAGTCCCTATGAAGGGAAAGAAGGATTTGA
ATTTTTCGTATGCCGGTTTGAAGAATGCGTTCAGAATGGCCGTTACAAGG
GTGATCGAATCCCAGAGGAAGGGCGAGGGAGGGGGGGAGAAAGGGGGGAA
GTTGGACCACCAGACGAAAGCGGACTTGGCGGCATCGTTTCAGAGTGTGG
CAATTGAACACCTGGAGGATCGGTTGGAAAGGGCGATGAAGGAGAGTGAG
GGAAGGGGGATTCGAACATTGGCGGTGGTGGGAGGAGTGGCGGCGAATCA
CGCGATACGGACACGACTGTGGGCCTTGTGTGAAAAGAGGAGTGTAGCGA
GGATGAGGGAGGTGGAAGAGAAGAGGGCATGGGTGGAGGAAATGGAAGGT
GATGGAGATGCTGCTGCTGCGGCCGCTATTGCTGTTGCGGATAAGTTGCC
TGCGTGGGAGTTGGTGGTGCCTCCGCCACGATTGTGCACAGACAATGGGG
TAATGGTTGCGTGGGCGGCAATTGAGAAACTGAGATTGGGCTTCTCGGAT
GTCTTGCAAGGACAGGACGTGCATGCGCGGTGGCCGTTTGCCAATTTGGA
TAAGAGGAAAGAAGATGAGATGGAGGAGCTGGTGGAGGGAGGAGGGGGTA
GGCCATGACGGCTCGATATGATAGAATGGGTCCCAAAATTATCAGACGAG
GGAATAATGTGACTTTTGAATTCTTATATAGATAACAACAAAGGAAACGA
GCTAGAAGCTTGCAAAGTATGAAATGACGCAACAAACTA

Coding sequence (CDS) from alignment at scaffold_3:1201587..1203725-

>mRNA_496 ID=mRNA_496|Name=jgi.p|Nanoce1779_2|577481|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_3:1201587..1203725- (Nannochloropsis oceanica)
ATGCCCGTGGCGGCCGTGAGTGGGCGCCACTTCCTCCTCTTGACACACGC
TTGCTTTATTGTCATGCTGCTGCGCCCCCCAAGCTCGACGCTGGCGCGGA
CGGGGCTTGGTGGCTTTTGTATCGCATTCCGGATACCACCACTACCGCGC
GCCGCCCATGCAGCATTCTTGCCCACCATTCCCACGGGACGAAGGGATAT
AATGTCTCCTTCGTCTCCCATCTCCTTTTTTTCATCGACTCCTGCCTCTT
CCAACGAAGAAAGTAGCCCAAGAGCCCCACCTACTGAACACACTGGCACT
AGCACGACACGCCGACGTAAACGATCCAAGAGCGGCGCGGGCGGCCCTAA
GCTCTCCCGTGAGTTTGTGGGCATCGCAAAGGCTACCGACACCGGTCGTT
TCCGGACGTATTCAGCCGATCAATTCAAAAAAGGCGCATCTGGCTTGCCT
GTCACCAGTCCTGAGCGCCCTTATTTTACTGTGTTGGGTATTGAGACGAG
CTGTGATGACACTGGTGTGGCCGTGGTGAGGTCCGATGGAGTTATCCTCG
GAGAAGCCCTCGCCTCTCAATACCAGATTCATGAGCAATGGGGTGGCGTG
GTACCTGGATTGGCGAGAGACGCACATGCGTCCGTGATTGATAGCATGGT
GCAGGAGGCGTTGAGCAAGGCAGGCATGGCGTCGGTAGGGGAGGTTGATG
CGATAGGGGTGACTGTTGGGCCGGGGCTGGAGATATGTTTAAGGGTGGGG
TGTGAGACGGCCAAGGGGCTGGCAGAGCTACATAAAAAACCATTTGTGGC
CGTGCATCACTTGGAGGCGCATTGTCTGATGGCGCGATTGGGGCAGCCGG
TGGTCGAGGTCGAGGAGGTGGAGGAGGGGGCGCAGGTGGAAGGGAAGAAG
GTCACTTCGCCTTCGGCTTGCTTTCCTTTTCTGGCTTTGCTTGTCTCAGG
GGGACATTGTATGATTCTAGAGTGTGCGAATGTGGGTCGATACCGAGTCC
TTGGGGGCACATTAGACGATGCATTGGGAGAGGCATACGACAAAGCAGCG
CGACTGCTGGAGGTGGGCTCGGGGGCTGCCGGTGGACCTGCCATGGAGCT
TTTAGCGAGGGAAGGAGACCCTACCGCGGTACTATTACCAGTCCCTATGA
AGGGAAAGAAGGATTTGAATTTTTCGTATGCCGGTTTGAAGAATGCGTTC
AGAATGGCCGTTACAAGGGTGATCGAATCCCAGAGGAAGGGCGAGGGAGG
GGGGGAGAAAGGGGGGAAGTTGGACCACCAGACGAAAGCGGACTTGGCGG
CATCGTTTCAGAGTGTGGCAATTGAACACCTGGAGGATCGGTTGGAAAGG
GCGATGAAGGAGAGTGAGGGAAGGGGGATTCGAACATTGGCGGTGGTGGG
AGGAGTGGCGGCGAATCACGCGATACGGACACGACTGTGGGCCTTGTGTG
AAAAGAGGAGTGTAGCGAGGATGAGGGAGGTGGAAGAGAAGAGGGCATGG
GTGGAGGAAATGGAAGGTGATGGAGATGCTGCTGCTGCGGCCGCTATTGC
TGTTGCGGATAAGTTGCCTGCGTGGGAGTTGGTGGTGCCTCCGCCACGAT
TGTGCACAGACAATGGGGTAATGGTTGCGTGGGCGGCAATTGAGAAACTG
AGATTGGGCTTCTCGGATGTCTTGCAAGGACAGGACGTGCATGCGCGGTG
GCCGTTTGCCAATTTGGATAAGAGGAAAGAAGATGAGATGGAGGAGCTGG
TGGAGGGAGGAGGGGGTAGGCCATGA

Synonyms

Publications