jgi.p|Nanoce1779_2|48535, mRNA_4958 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|48535
Unique NamemRNA_4958
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1348
Alignment locationscaffold_12:120070..121417 -

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Properties
Property NameValue
TranscriptId48621
TrackFilteredModels2
ProteinId48535
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:120070..121417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|48535gene_4958Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|48535mRNA_4958-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4958CDS_4958Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4958 ID=mRNA_4958|Name=jgi.p|Nanoce1779_2|48535|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp
GGGACAGCGTGACAGCTGTGTGTGTGTGTGTTGTGGAGTGGAGCTGTGAG
GTGTCATTTAGCTCTTTTTTTCTGTTCCTCCATCCCTCTAGAACAATCGC
ATGCAACCTGACATCCTCTAGGACTTGCATACGATGGGGAGCCTTCCAAC
AATAAAATATTGCCTATTCACCCCTTATCCCTTGCCCGAAATTTACTAGC
GACTGACAGGTTTTTCATCAGGCAGTCTCCGGACTGCCCACACAGGGCCA
GGAGGAGAAAGGTGAGGGGGATAAAAGAGGAGGTCAGCGGGGAGGCTACA
CATAGAGTGTCCGCTTATCCTGCCGCGATTGACGGAACCGAAGATCATGG
GGACGAGCTTCTCCACGGACCATACTCCTGTACACCCGCAGGATGTTACG
TGCCCCATTGCCGTCCCGAGACACGAACTGTTCACAGGTGTTACACCAAT
ACAGTCCTCGGATGGCCCGCCCGTGACCTCCTCCTCCTCCTCCGCCTCAG
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCTCTGCCTCCTCC
TCCTCCATCTCCTCCTCTGCTTCCACCGCCTCCTCTGTTTCCACCGCCTC
CGCCTCCCTATCTCCTCCTCTTCCTCCGCCGCCTCTCCCTTCTCCTCCTC
CTCCTCCTGCTACTGATCCTCCCCCTCTGCCTCCTCCTCCTCCTTCTCCC
CTTTCCAATCCTCCTCGCACCCTTCCCTCTTTTCTCACTCTCCCTTCTCC
TACTTTCCTCCTTCTCTCCCTCTATCTCTCTTTCGTCTCCCTTCTCGTCC
ATTTCCTCCTCGTCTCCCTCCGTCTCACCCTCCTCCTTCTTCCTCTTCCT
CTTCTTGTTCCTCTTCTTCTTCTCCTCTTTCTCCTTCTTGTTGATCTCCT
TCTTCTTCCTCCTCCTCTTATCTTTCTTCTTCTTCTTCTTCTTCTTCTCC
TCGTCTCCCTTCCCGTCCACCTCCTCCACTTCCTCCTCCCCCCCTCCATC
TCCTTCTTCTCCTTTCCCTCCTCCTCCTGCTACTGATCCATCTCCTCTTT
GGCTCCTCTTTGGATGCCTCTCCCGGTTGTGGAGGCTGACTAGTTTAGTC
GATGTCGACTCTGCTTGTAAGCTTCCACATGTATTTTCAGACCTTTTCGT
GTCTTCACGAAAATTGTACGGCTGCGCACGGGAAGAAAGTGAAGAGGTGA
CGTGGGTAAGATGGAGAGGAGAAATGGTAGAGATTGAACGCGGTAGAAGG
CAGATGAGGCTGCGAGGACGAACGAACATAGAAGGAAATGGATTTCCTTT
GTGGAAAACAAGGAGGAAATGGATGAACACCCGGAGATACTCTCTGAT
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protein sequence of jgi.p|Nanoce1779_2|48535

>mRNA_4958-protein ID=mRNA_4958-protein|Name=jgi.p|Nanoce1779_2|48535|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MGTSFSTDHTPVHPQDVTCPIAVPRHELFTGVTPIQSSDGPPVTSSSSSA
SASSSSSSSSSSSASASSSSISSSASTASSVSTASASLSPPLPPPPLPSP
PPPPATDPPPLPPPPPSPLSNPPRTLPSFLTLPSPTFLLLSLYLSFVSLL
VHFLLVSLRLTLLLLPLPLLVPLLLLLFLLLVDLLLLPPPLIFLLLLLLL
LLVSLPVHLLHFLLPPSISFFSFPSSSCY*
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mRNA from alignment at scaffold_12:120070..121417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4958 ID=mRNA_4958|Name=jgi.p|Nanoce1779_2|48535|organism=Nannochloropsis oceanica|type=mRNA|length=1348bp|location=Sequence derived from alignment at scaffold_12:120070..121417- (Nannochloropsis oceanica)
GGGACAGCGTGACAGCTGTGTGTGTGTGTGTTGTGGAGTGGAGCTGTGAG
GTGTCATTTAGCTCTTTTTTTCTGTTCCTCCATCCCTCTAGAACAATCGC
ATGCAACCTGACATCCTCTAGGACTTGCATACGATGGGGAGCCTTCCAAC
AATAAAATATTGCCTATTCACCCCTTATCCCTTGCCCGAAATTTACTAGC
GACTGACAGGTTTTTCATCAGGCAGTCTCCGGACTGCCCACACAGGGCCA
GGAGGAGAAAGGTGAGGGGGATAAAAGAGGAGGTCAGCGGGGAGGCTACA
CATAGAGTGTCCGCTTATCCTGCCGCGATTGACGGAACCGAAGATCATGG
GGACGAGCTTCTCCACGGACCATACTCCTGTACACCCGCAGGATGTTACG
TGCCCCATTGCCGTCCCGAGACACGAACTGTTCACAGGTGTTACACCAAT
ACAGTCCTCGGATGGCCCGCCCGTGACCTCCTCCTCCTCCTCCGCCTCAG
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCTCTGCCTCCTCC
TCCTCCATCTCCTCCTCTGCTTCCACCGCCTCCTCTGTTTCCACCGCCTC
CGCCTCCCTATCTCCTCCTCTTCCTCCGCCGCCTCTCCCTTCTCCTCCTC
CTCCTCCTGCTACTGATCCTCCCCCTCTGCCTCCTCCTCCTCCTTCTCCC
CTTTCCAATCCTCCTCGCACCCTTCCCTCTTTTCTCACTCTCCCTTCTCC
TACTTTCCTCCTTCTCTCCCTCTATCTCTCTTTCGTCTCCCTTCTCGTCC
ATTTCCTCCTCGTCTCCCTCCGTCTCACCCTCCTCCTTCTTCCTCTTCCT
CTTCTTGTTCCTCTTCTTCTTCTCCTCTTTCTCCTTCTTGTTGATCTCCT
TCTTCTTCCTCCTCCTCTTATCTTTCTTCTTCTTCTTCTTCTTCTTCTCC
TCGTCTCCCTTCCCGTCCACCTCCTCCACTTCCTCCTCCCCCCCTCCATC
TCCTTCTTCTCCTTTCCCTCCTCCTCCTGCTACTGATCCATCTCCTCTTT
GGCTCCTCTTTGGATGCCTCTCCCGGTTGTGGAGGCTGACTAGTTTAGTC
GATGTCGACTCTGCTTGTAAGCTTCCACATGTATTTTCAGACCTTTTCGT
GTCTTCACGAAAATTGTACGGCTGCGCACGGGAAGAAAGTGAAGAGGTGA
CGTGGGTAAGATGGAGAGGAGAAATGGTAGAGATTGAACGCGGTAGAAGG
CAGATGAGGCTGCGAGGACGAACGAACATAGAAGGAAATGGATTTCCTTT
GTGGAAAACAAGGAGGAAATGGATGAACACCCGGAGATACTCTCTGAT
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Coding sequence (CDS) from alignment at scaffold_12:120070..121417-

>mRNA_4958 ID=mRNA_4958|Name=jgi.p|Nanoce1779_2|48535|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_12:120070..121417- (Nannochloropsis oceanica)
ATGGGGACGAGCTTCTCCACGGACCATACTCCTGTACACCCGCAGGATGT
TACGTGCCCCATTGCCGTCCCGAGACACGAACTGTTCACAGGTGTTACAC
CAATACAGTCCTCGGATGGCCCGCCCGTGACCTCCTCCTCCTCCTCCGCC
TCAGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCTCTGCCTC
CTCCTCCTCCATCTCCTCCTCTGCTTCCACCGCCTCCTCTGTTTCCACCG
CCTCCGCCTCCCTATCTCCTCCTCTTCCTCCGCCGCCTCTCCCTTCTCCT
CCTCCTCCTCCTGCTACTGATCCTCCCCCTCTGCCTCCTCCTCCTCCTTC
TCCCCTTTCCAATCCTCCTCGCACCCTTCCCTCTTTTCTCACTCTCCCTT
CTCCTACTTTCCTCCTTCTCTCCCTCTATCTCTCTTTCGTCTCCCTTCTC
GTCCATTTCCTCCTCGTCTCCCTCCGTCTCACCCTCCTCCTTCTTCCTCT
TCCTCTTCTTGTTCCTCTTCTTCTTCTCCTCTTTCTCCTTCTTGTTGATC
TCCTTCTTCTTCCTCCTCCTCTTATCTTTCTTCTTCTTCTTCTTCTTCTT
CTCCTCGTCTCCCTTCCCGTCCACCTCCTCCACTTCCTCCTCCCCCCCTC
CATCTCCTTCTTCTCCTTTCCCTCCTCCTCCTGCTACTGA
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Synonyms
Publications