jgi.p|Nanoce1779_2|590923, mRNA_4957 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590923
Unique NamemRNA_4957
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length894
Alignment locationscaffold_12:118439..119441 +

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Properties
Property NameValue
TranscriptId591009
TrackFilteredModels2
ProteinId590923
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:118439..119441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590923gene_4957Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590923mRNA_4957-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4957CDS_4957Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4957 ID=mRNA_4957|Name=jgi.p|Nanoce1779_2|590923|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
CAGAAACATGATCGAGCGCACCTTCAGAGGGCTCAAGAAAAAGACGGGCG
ATGGAGCCCTTGACGTGGACCTTTGGAATGATGCTGGTAATGAGAAGAGT
GACTGGCCAGATGCGAGGAGTGAGTCTTCTCCATCATCACGTTTGTACCA
CTCGCTTACCGCCTGGACTGGACCAATGCCGGAGGCATTCTCCTTCATGC
TCAAGCACGGCCCATTAGAGCGCATGCTACGCCAGTCCCAAAGAGCACGG
CATACACATAAGCTTAACCTCAGAGACCCCATTGTTAATCAAGCCCTGAG
GACAAGCAGCACCAGCAACGACGATATCAGTGGTATGTACGCGGCCCATT
CAGAAGTGTATCTCGTTTATTCCGATGACCTCCTAGAGCCGCAGGAGACA
AGCCCACGTGGTCAGGAAACTTTCAACGGCGACAGCTCCGTTCCACGATC
GTTGATCCGAGCAGGGAGGACCACTGTGCGCAATTCCCGTGGGATTTCTC
TTTGTCCCCCTGTTCATAGGGTGGCTAGCATCCCTAGGTCGTCCAATTCT
GTACCATCCTCCCCCGTTGCCGCGATTTACACTTTTACCAGCTGTATTGC
TGTACAGGCATTGGTGGAATCGGAAGCCTTGGGGCCTGATGGGCAAGGGC
AATGGAAGAAGCCGACGAAGGCCGCAAAAATATCAAATAGGATGAGGACG
AGGACGATGGCAGCCTTCATCTGTAATTTGGGAGAGACTGGACGCGCTGG
TCGTTTGGTAAGGTCGAACTTCTAGAGAAAGGGCGTTCCGTGTGCGCTGC
TGCGGACCTACTCTTGCACTTCGGCACCGAGATCGACACCTTCTGGCCCA
TGGAGGGTCGACTGCGTGAACCTAAATAGGTCGGTTGACCAGCT
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protein sequence of jgi.p|Nanoce1779_2|590923

>mRNA_4957-protein ID=mRNA_4957-protein|Name=jgi.p|Nanoce1779_2|590923|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MIERTFRGLKKKTGDGALDVDLWNDAGNEKSDWPDARSESSPSSRLYHSL
TAWTGPMPEAFSFMLKHGPLERMLRQSQRARHTHKLNLRDPIVNQALRTS
STSNDDISGMYAAHSEVYLVYSDDLLEPQETSPRGQETFNGDSSVPRSLI
RAGRTTVRNSRGISLCPPVHRVASIPRSSNSVPSSPVAAIYTFTSCIAVQ
ALVESEALGPDGQGQWKKPTKAAKISNRMRTRTMAAFICNLGETGRAGRL
VRSNF*
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mRNA from alignment at scaffold_12:118439..119441+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4957 ID=mRNA_4957|Name=jgi.p|Nanoce1779_2|590923|organism=Nannochloropsis oceanica|type=mRNA|length=1003bp|location=Sequence derived from alignment at scaffold_12:118439..119441+ (Nannochloropsis oceanica)
CAGAAACATGATCGAGCGCACCTTCAGAGGGCTCAAGAAAAAGACGGGCG
ATGGAGCCCTTGACGTGGACCTTTGGAATGATGCTGGTAATGAGAAGAGT
GACTGGCCAGATGCGAGGAGTGAGTCTTCTCCATCATCACGTTTGTACCA
CTCGCTTACCGCCTGGACTGGACCAATGCCGGAGGCATTCTCCTTCATGC
TCAAGCACGGCCCATTAGAGCGCATGCTACGCCAGTCCCAAAGAGCACGG
CATACACATAAGCTTAACCTCAGAGACCCCATTGTTAATCAAGCCCTGAG
GACAAGCAGCACCAGCAACGACGATATCAGTGGTATGTACGCGGCCCATT
CAGAAGTGTATCTCGTTTATTCCGATGACCTCCTAGAGCCGCAGGAGACA
AGCCCACGTGGTCAGGAAACTTTCAACGGCGACAGCTCCGTTCCACGATC
GTTGATCCGGTAGGGGCAGAAGGTGAAGAGAAGGAACTGAGGCATCTGGC
TGACGACAAGAGACTGCTATTGATGATCCACATGCTCCTCACAACTTTTC
CTCCCTATCGCTGCAAAGAGCAGGGAGGACCACTGTGCGCAATTCCCGTG
GGATTTCTCTTTGTCCCCCTGTTCATAGGGTGGCTAGCATCCCTAGGTCG
TCCAATTCTGTACCATCCTCCCCCGTTGCCGCGATTTACACTTTTACCAG
CTGTATTGCTGTACAGGCATTGGTGGAATCGGAAGCCTTGGGGCCTGATG
GGCAAGGGCAATGGAAGAAGCCGACGAAGGCCGCAAAAATATCAAATAGG
ATGAGGACGAGGACGATGGCAGCCTTCATCTGTAATTTGGGAGAGACTGG
ACGCGCTGGTCGTTTGGTAAGGTCGAACTTCTAGAGAAAGGGCGTTCCGT
GTGCGCTGCTGCGGACCTACTCTTGCACTTCGGCACCGAGATCGACACCT
TCTGGCCCATGGAGGGTCGACTGCGTGAACCTAAATAGGTCGGTTGACCA
GCT
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Coding sequence (CDS) from alignment at scaffold_12:118439..119441+

>mRNA_4957 ID=mRNA_4957|Name=jgi.p|Nanoce1779_2|590923|organism=Nannochloropsis oceanica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_12:118439..119441+ (Nannochloropsis oceanica)
ATGATCGAGCGCACCTTCAGAGGGCTCAAGAAAAAGACGGGCGATGGAGC
CCTTGACGTGGACCTTTGGAATGATGCTGGTAATGAGAAGAGTGACTGGC
CAGATGCGAGGAGTGAGTCTTCTCCATCATCACGTTTGTACCACTCGCTT
ACCGCCTGGACTGGACCAATGCCGGAGGCATTCTCCTTCATGCTCAAGCA
CGGCCCATTAGAGCGCATGCTACGCCAGTCCCAAAGAGCACGGCATACAC
ATAAGCTTAACCTCAGAGACCCCATTGTTAATCAAGCCCTGAGGACAAGC
AGCACCAGCAACGACGATATCAGTGGTATGTACGCGGCCCATTCAGAAGT
GTATCTCGTTTATTCCGATGACCTCCTAGAGCCGCAGGAGACAAGCCCAC
GTGGTCAGGAAACTTTCAACGGCGACAGCTCCGTTCCACGATCGTTGATC
CGAGCAGGGAGGACCACTGTGCGCAATTCCCGTGGGATTTCTCTTTGTCC
CCCTGTTCATAGGGTGGCTAGCATCCCTAGGTCGTCCAATTCTGTACCAT
CCTCCCCCGTTGCCGCGATTTACACTTTTACCAGCTGTATTGCTGTACAG
GCATTGGTGGAATCGGAAGCCTTGGGGCCTGATGGGCAAGGGCAATGGAA
GAAGCCGACGAAGGCCGCAAAAATATCAAATAGGATGAGGACGAGGACGA
TGGCAGCCTTCATCTGTAATTTGGGAGAGACTGGACGCGCTGGTCGTTTG
GTAAGGTCGAACTTCTAGATGATCGAGCGCACCTTCAGAGGGCTCAAGAA
AAAGACGGGCGATGGAGCCCTTGACGTGGACCTTTGGAATGATGCTGGTA
ATGAGAAGAGTGACTGGCCAGATGCGAGGAGTGAGTCTTCTCCATCATCA
CGTTTGTACCACTCGCTTACCGCCTGGACTGGACCAATGCCGGAGGCATT
CTCCTTCATGCTCAAGCACGGCCCATTAGAGCGCATGCTACGCCAGTCCC
AAAGAGCACGGCATACACATAAGCTTAACCTCAGAGACCCCATTGTTAAT
CAAGCCCTGAGGACAAGCAGCACCAGCAACGACGATATCAGTGGTATGTA
CGCGGCCCATTCAGAAGTGTATCTCGTTTATTCCGATGACCTCCTAGAGC
CGCAGGAGACAAGCCCACGTGGTCAGGAAACTTTCAACGGCGACAGCTCC
GTTCCACGATCGTTGATCCGAGCAGGGAGGACCACTGTGCGCAATTCCCG
TGGGATTTCTCTTTGTCCCCCTGTTCATAGGGTGGCTAGCATCCCTAGGT
CGTCCAATTCTGTACCATCCTCCCCCGTTGCCGCGATTTACACTTTTACC
AGCTGTATTGCTGTACAGGCATTGGTGGAATCGGAAGCCTTGGGGCCTGA
TGGGCAAGGGCAATGGAAGAAGCCGACGAAGGCCGCAAAAATATCAAATA
GGATGAGGACGAGGACGATGGCAGCCTTCATCTGTAATTTGGGAGAGACT
GGACGCGCTGGTCGTTTGGTAAGGTCGAACTTCTAG
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Synonyms
Publications