jgi.p|Nanoce1779_2|590921, mRNA_4956 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590921
Unique Name	mRNA_4956
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3729
Alignment location	scaffold_12:115713..119441 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	591007
Track	FilteredModels2
ProteinId	590921

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:115713..119441 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590921	gene_4956	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590921	mRNA_4956-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4956	CDS_4956	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:115713..119441+
coding sequence from alignment at scaffold_12:115713..119441+

mRNA sequence

>mRNA_4956 ID=mRNA_4956|Name=jgi.p|Nanoce1779_2|590921|organism=Nannochloropsis oceanica|type=mRNA|length=3729bp
TCAACCCCGAGCCTACCAGCACCAGCAGTACCCGCACCCGCAGCAGCAGC
ACCCGCAGCAGCAGCAGCAGCAGCAGCACCAGCAGGCAGTACAGGCATTG
TTCAGCGGGCGGAGAGCAGCTGGAAGGTGCCAGCAGCAGCCCAACGCTGG
AGGCAGGCGGGGCTGGTGGTGGGAAGGAGAAGGTCGTGCCCAATATCTAC
CCGTCTTGGGAGGCAGCGACACACAACCCGGTCACCAATAAGGGGAGTGA
CGATGCCTTGCCCTGGTTTAAGACCATCGCCAGTGGTCGCGTCCAGAAGC
ATTTGATGCGGTTCGTGAACAATTTCATCTCCCAGCAGGACCTGGAGGAC
GAGTTGGGGTTGTATATGGCCGACATTTTCTACGAGACAGAGACCGGGCC
GACCATGATGGCACTCTTCGACAAGCTAATATGTCGCGTAGCTGAGCGTT
GCCCCAGCCGCCTTCAGGAATTTCGGGAGGAAGCCTTAAAGAGCCTGGCG
CAGCTCATGCAGGCTTGCGAAGAGCGGGAGGAGCAGCAGGAGCGGGGTCG
TGAGGCGCTCAAGACTTCGGGTCAGCGCGGTAAGCCTGTGCGAAACGCTG
CCAAGCGCTTGGGGAAGTCGCGCACCGAGGCTCGTAAACTTGGTGCTATG
ATTGCTCACTACCGATCCTTGCCTAGCGAGGATGGGGAAGACGAGAAGGG
AGGACAGATTGGTGGGACAGGGGAGGATGAGATGAGTGTGCTGAAAGGGC
TTCCATTTAACCCTGTGCCAATGATGGGCAGCAACCTCAACGAGGACAAG
GGCGGACAGCAAGACGGAGCCGGGGAGGCGAAGGGGCGGCAGGCCCGTTT
GCACTTTTTGGAGGACGAAGAGGACCAGAATGAGGAGGAGGACGTGTGGG
ATGACGACTATGATTTGGAGGAGGTGGAGGACGAGGAGAAGAAATAATAG
GGTGACGAAGGTGGACAGCCGCCTGCAGCGAGAAAGGATGTGATGGGTGC
AGTTTGAGGATGTCTTGTTGTACTTTCTGATAAAAATGTAGCGATAATGA
CACAAAAAGAACTGGCAGAGGGCAGATAGATGAGATTAGGAAGAACATAA
GATCCATAGAATATGGAAGAAGAGGGCGAGGGAGCGAAAGAGTCAGAAAA
AGAGGAGCGAGGGTGACGAGACGTATCAGCAGCGACTACAAGCAACAGTC
GAGTTTCCATGTATTATTATTGATGTGCACTCTAACTCCGAGTGGACAAT
GCAATTCTTCTTCAAGAGTTCCAAAAATAATGTTCCAAAGGTCCGAGTGG
CCTGCAGACGGAGTGCTGAAAGCTAGCAGACAAACAACCCAACAAGTGCA
CAGTCGAGAAAGAGAGAAGAAGCAACCGTCTTTGGAATAGAGCGAATCCA
CCATCTAACAGCGTCGAGACGACTAAGGCGACGGCGACTACTAATAAATA
CCTCAGAGGGTGACAATTTCTTAACCAGTGATGAAGAAGGCTGGCCGAGG
GCCCAATTATCTACTTATACATATCGCATGTGTCCACATCTGAATGAATC
ACAAGAAGAAATCGGTCTGACGAGATACACAAACCATTTGATGAAATGTA
CTTTTGAAACCCCTGCCAGAAACATCCGGGAAAGAAAAGACAATGAGTGT
ATGTAGGCTTTTTGAAAGGCTCTCGTGAAGAGGTCATCTCAAGAGCAACA
AATGAAATCATACGAGACAACAACCCGAGAGCCCACACAATACTAACCTC
TTCAACCACGTGTGCCGCGCCGGAAGCAAATACTTATCAAAAATCACCTT
TAAGGTCAGCAAAGTCAACTTAACCCAAAAGCATCAAATGATTAGAAGCA
ATAACCTGTCTTTGCTGGTCAGCTTTCCTTCCCGTGACTCCTCATCTCTT
TGGCACGCGTCCAGCAGATCGAAGCAAATCGTGTTTTTGCTTCTTGCCCT
TTGCCAATTTCTGGCGATTGTTTTACACTTGAGCCGCTTTTTACGTCGAT
ATTTGCCTACAACTATATTTTTTCATTGTTTTCCTTTTCATTCTTATACT
GAGGCGATTTCTATACCCCCCCCATTTTATGCCCTTTTGGGGGGATGCTG
CAGCGCCAAAATTTGGGCCATAATACGATTTATACAATGTTGATCATTAC
GCTGCCATGACAATGATAACTGAACTCTCTTACTCTCTGACCAAAAAAAG
CAAGGGGGTTCAACCTAGTTGGTGATGGGAGCAGGGGTGGGCCCCCAGTC
GATATTTCCTATCCGGCTCGAGCAGGCGGAGCGGTGCACGTGTGAGAAGA
GGGTTGGCTGCCAGAGCCACTCAACAAAAACAGAGCGCAACATGTCGACC
CAAATATTCATTAGCTCAAAGGATTCTGTCTTTTTTCCTTGCTTAGTCCT
TCCTATTGCCTTGTCAGGAGCATTTTTTGTACTCGGTCACGCGGATCCCC
GGGTCCCCAGCGGAATCGGGCTGCCAAAACAGACTTGGGTCGTCCTTTTA
ACCTGGTCCAGTATCTGGTCTGCCGGGTGACCGGGATAATCTACCGGGTG
ATTGGGATAACCGGATTCGGTAGCGACCGCCTGTAGGGCGTAGGGTGCAA
CTAGCAGAAATACGGCTGGCACGGGCTGGCCTATGCTCTAGGAGGGAACT
TCGTTCAACGACAATTCAACGAACGGGCTTCGATCACGAACCTTTTTCTC
CCCTCTCTTTCCACTCCCTTACACAGCAGAAACATGATCGAGCGCACCTT
CAGAGGGCTCAAGAAAAAGACGGGCGATGGAGCCCTTGACGTGGACCTTT
GGAATGATGCTGGTAATGAGAAGAGTGACTGGCCAGATGCGAGGAGTGAG
TCTTCTCCATCATCACGTTTGTACCACTCGCTTACCGCCTGGACTGGACC
AATGCCGGAGGCATTCTCCTTCATGCTCAAGCACGGCCCATTAGAGCGCA
TGCTACGCCAGTCCCAAAGAGCACGGCATACACATAAGCTTAACCTCAGA
GACCCCATTGTTAATCAAGCCCTGAGGACAAGCAGCACCAGCAACGACGA
TATCAGTGGTATGTACGCGGCCCATTCAGAAGTGTATCTCGTTTATTCCG
ATGACCTCCTAGAGCCGCAGGAGACAAGCCCACGTGGTCAGGAAACTTTC
AACGGCGACAGCTCCGTTCCACGATCGTTGATCCGGTAGGGGCAGAAGGT
GAAGAGAAGGAACTGAGGCATCTGGCTGACGACAAGAGACTGCTATTGAT
GATCCACATGCTCCTCACAACTTTTCCTCCCTATCGCTGCAAAGAGCAGG
GAGGACCACTGTGCGCAATTCCCGTGGGATTTCTCTTTGTCCCCCTGTTC
ATAGGGTGGCTAGCATCCCTAGGTCGTCCAATTCTGTACCATCCTCCCCC
GTTGCCGCGATTTACACTTTTACCAGCTGTATTGCTGTACAGGCATTGGT
GGAATCGGAAGCCTTGGGGCCTGATGGGCAAGGGCAATGGAAGAAGCCGA
CGAAGGCCGCAAAAATATCAAATAGGATGAGGACGAGGACGATGGCAGCC
TTCATCTGTAATTTGGGAGAGACTGGACGCGCTGGTCGTTTGGTAAGGTC
GAACTTCTAGAGAAAGGGCGTTCCGTGTGCGCTGCTGCGGACCTACTCTT
GCACTTCGGCACCGAGATCGACACCTTCTGGCCCATGGAGGGTCGACTGC
GTGAACCTAAATAGGTCGGTTGACCAGCT

protein sequence of jgi.p|Nanoce1779_2|590921

>mRNA_4956-protein ID=mRNA_4956-protein|Name=jgi.p|Nanoce1779_2|590921|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MRFVNNFISQQDLEDELGLYMADIFYETETGPTMMALFDKLICRVAERCP
SRLQEFREEALKSLAQLMQACEEREEQQERGREALKTSGQRGKPVRNAAK
RLGKSRTEARKLGAMIAHYRSLPSEDGEDEKGGQIGGTGEDEMSVLKGLP
FNPVPMMGSNLNEDKGGQQDGAGEAKGRQARLHFLEDEEDQNEEEDVWDD
DYDLEEVEDEEKK*

mRNA from alignment at scaffold_12:115713..119441+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4956 ID=mRNA_4956|Name=jgi.p|Nanoce1779_2|590921|organism=Nannochloropsis oceanica|type=mRNA|length=3729bp|location=Sequence derived from alignment at scaffold_12:115713..119441+ (Nannochloropsis oceanica)
TCAACCCCGAGCCTACCAGCACCAGCAGTACCCGCACCCGCAGCAGCAGC
ACCCGCAGCAGCAGCAGCAGCAGCAGCACCAGCAGGCAGTACAGGCATTG
TTCAGCGGGCGGAGAGCAGCTGGAAGGTGCCAGCAGCAGCCCAACGCTGG
AGGCAGGCGGGGCTGGTGGTGGGAAGGAGAAGGTCGTGCCCAATATCTAC
CCGTCTTGGGAGGCAGCGACACACAACCCGGTCACCAATAAGGGGAGTGA
CGATGCCTTGCCCTGGTTTAAGACCATCGCCAGTGGTCGCGTCCAGAAGC
ATTTGATGCGGTTCGTGAACAATTTCATCTCCCAGCAGGACCTGGAGGAC
GAGTTGGGGTTGTATATGGCCGACATTTTCTACGAGACAGAGACCGGGCC
GACCATGATGGCACTCTTCGACAAGCTAATATGTCGCGTAGCTGAGCGTT
GCCCCAGCCGCCTTCAGGAATTTCGGGAGGAAGCCTTAAAGAGCCTGGCG
CAGCTCATGCAGGCTTGCGAAGAGCGGGAGGAGCAGCAGGAGCGGGGTCG
TGAGGCGCTCAAGACTTCGGGTCAGCGCGGTAAGCCTGTGCGAAACGCTG
CCAAGCGCTTGGGGAAGTCGCGCACCGAGGCTCGTAAACTTGGTGCTATG
ATTGCTCACTACCGATCCTTGCCTAGCGAGGATGGGGAAGACGAGAAGGG
AGGACAGATTGGTGGGACAGGGGAGGATGAGATGAGTGTGCTGAAAGGGC
TTCCATTTAACCCTGTGCCAATGATGGGCAGCAACCTCAACGAGGACAAG
GGCGGACAGCAAGACGGAGCCGGGGAGGCGAAGGGGCGGCAGGCCCGTTT
GCACTTTTTGGAGGACGAAGAGGACCAGAATGAGGAGGAGGACGTGTGGG
ATGACGACTATGATTTGGAGGAGGTGGAGGACGAGGAGAAGAAATAATAG
GGTGACGAAGGTGGACAGCCGCCTGCAGCGAGAAAGGATGTGATGGGTGC
AGTTTGAGGATGTCTTGTTGTACTTTCTGATAAAAATGTAGCGATAATGA
CACAAAAAGAACTGGCAGAGGGCAGATAGATGAGATTAGGAAGAACATAA
GATCCATAGAATATGGAAGAAGAGGGCGAGGGAGCGAAAGAGTCAGAAAA
AGAGGAGCGAGGGTGACGAGACGTATCAGCAGCGACTACAAGCAACAGTC
GAGTTTCCATGTATTATTATTGATGTGCACTCTAACTCCGAGTGGACAAT
GCAATTCTTCTTCAAGAGTTCCAAAAATAATGTTCCAAAGGTCCGAGTGG
CCTGCAGACGGAGTGCTGAAAGCTAGCAGACAAACAACCCAACAAGTGCA
CAGTCGAGAAAGAGAGAAGAAGCAACCGTCTTTGGAATAGAGCGAATCCA
CCATCTAACAGCGTCGAGACGACTAAGGCGACGGCGACTACTAATAAATA
CCTCAGAGGGTGACAATTTCTTAACCAGTGATGAAGAAGGCTGGCCGAGG
GCCCAATTATCTACTTATACATATCGCATGTGTCCACATCTGAATGAATC
ACAAGAAGAAATCGGTCTGACGAGATACACAAACCATTTGATGAAATGTA
CTTTTGAAACCCCTGCCAGAAACATCCGGGAAAGAAAAGACAATGAGTGT
ATGTAGGCTTTTTGAAAGGCTCTCGTGAAGAGGTCATCTCAAGAGCAACA
AATGAAATCATACGAGACAACAACCCGAGAGCCCACACAATACTAACCTC
TTCAACCACGTGTGCCGCGCCGGAAGCAAATACTTATCAAAAATCACCTT
TAAGGTCAGCAAAGTCAACTTAACCCAAAAGCATCAAATGATTAGAAGCA
ATAACCTGTCTTTGCTGGTCAGCTTTCCTTCCCGTGACTCCTCATCTCTT
TGGCACGCGTCCAGCAGATCGAAGCAAATCGTGTTTTTGCTTCTTGCCCT
TTGCCAATTTCTGGCGATTGTTTTACACTTGAGCCGCTTTTTACGTCGAT
ATTTGCCTACAACTATATTTTTTCATTGTTTTCCTTTTCATTCTTATACT
GAGGCGATTTCTATACCCCCCCCATTTTATGCCCTTTTGGGGGGATGCTG
CAGCGCCAAAATTTGGGCCATAATACGATTTATACAATGTTGATCATTAC
GCTGCCATGACAATGATAACTGAACTCTCTTACTCTCTGACCAAAAAAAG
CAAGGGGGTTCAACCTAGTTGGTGATGGGAGCAGGGGTGGGCCCCCAGTC
GATATTTCCTATCCGGCTCGAGCAGGCGGAGCGGTGCACGTGTGAGAAGA
GGGTTGGCTGCCAGAGCCACTCAACAAAAACAGAGCGCAACATGTCGACC
CAAATATTCATTAGCTCAAAGGATTCTGTCTTTTTTCCTTGCTTAGTCCT
TCCTATTGCCTTGTCAGGAGCATTTTTTGTACTCGGTCACGCGGATCCCC
GGGTCCCCAGCGGAATCGGGCTGCCAAAACAGACTTGGGTCGTCCTTTTA
ACCTGGTCCAGTATCTGGTCTGCCGGGTGACCGGGATAATCTACCGGGTG
ATTGGGATAACCGGATTCGGTAGCGACCGCCTGTAGGGCGTAGGGTGCAA
CTAGCAGAAATACGGCTGGCACGGGCTGGCCTATGCTCTAGGAGGGAACT
TCGTTCAACGACAATTCAACGAACGGGCTTCGATCACGAACCTTTTTCTC
CCCTCTCTTTCCACTCCCTTACACAGCAGAAACATGATCGAGCGCACCTT
CAGAGGGCTCAAGAAAAAGACGGGCGATGGAGCCCTTGACGTGGACCTTT
GGAATGATGCTGGTAATGAGAAGAGTGACTGGCCAGATGCGAGGAGTGAG
TCTTCTCCATCATCACGTTTGTACCACTCGCTTACCGCCTGGACTGGACC
AATGCCGGAGGCATTCTCCTTCATGCTCAAGCACGGCCCATTAGAGCGCA
TGCTACGCCAGTCCCAAAGAGCACGGCATACACATAAGCTTAACCTCAGA
GACCCCATTGTTAATCAAGCCCTGAGGACAAGCAGCACCAGCAACGACGA
TATCAGTGGTATGTACGCGGCCCATTCAGAAGTGTATCTCGTTTATTCCG
ATGACCTCCTAGAGCCGCAGGAGACAAGCCCACGTGGTCAGGAAACTTTC
AACGGCGACAGCTCCGTTCCACGATCGTTGATCCGGTAGGGGCAGAAGGT
GAAGAGAAGGAACTGAGGCATCTGGCTGACGACAAGAGACTGCTATTGAT
GATCCACATGCTCCTCACAACTTTTCCTCCCTATCGCTGCAAAGAGCAGG
GAGGACCACTGTGCGCAATTCCCGTGGGATTTCTCTTTGTCCCCCTGTTC
ATAGGGTGGCTAGCATCCCTAGGTCGTCCAATTCTGTACCATCCTCCCCC
GTTGCCGCGATTTACACTTTTACCAGCTGTATTGCTGTACAGGCATTGGT
GGAATCGGAAGCCTTGGGGCCTGATGGGCAAGGGCAATGGAAGAAGCCGA
CGAAGGCCGCAAAAATATCAAATAGGATGAGGACGAGGACGATGGCAGCC
TTCATCTGTAATTTGGGAGAGACTGGACGCGCTGGTCGTTTGGTAAGGTC
GAACTTCTAGAGAAAGGGCGTTCCGTGTGCGCTGCTGCGGACCTACTCTT
GCACTTCGGCACCGAGATCGACACCTTCTGGCCCATGGAGGGTCGACTGC
GTGAACCTAAATAGGTCGGTTGACCAGCT

Coding sequence (CDS) from alignment at scaffold_12:115713..119441+

>mRNA_4956 ID=mRNA_4956|Name=jgi.p|Nanoce1779_2|590921|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_12:115713..119441+ (Nannochloropsis oceanica)
ATGCGGTTCGTGAACAATTTCATCTCCCAGCAGGACCTGGAGGACGAGTT
GGGGTTGTATATGGCCGACATTTTCTACGAGACAGAGACCGGGCCGACCA
TGATGGCACTCTTCGACAAGCTAATATGTCGCGTAGCTGAGCGTTGCCCC
AGCCGCCTTCAGGAATTTCGGGAGGAAGCCTTAAAGAGCCTGGCGCAGCT
CATGCAGGCTTGCGAAGAGCGGGAGGAGCAGCAGGAGCGGGGTCGTGAGG
CGCTCAAGACTTCGGGTCAGCGCGGTAAGCCTGTGCGAAACGCTGCCAAG
CGCTTGGGGAAGTCGCGCACCGAGGCTCGTAAACTTGGTGCTATGATTGC
TCACTACCGATCCTTGCCTAGCGAGGATGGGGAAGACGAGAAGGGAGGAC
AGATTGGTGGGACAGGGGAGGATGAGATGAGTGTGCTGAAAGGGCTTCCA
TTTAACCCTGTGCCAATGATGGGCAGCAACCTCAACGAGGACAAGGGCGG
ACAGCAAGACGGAGCCGGGGAGGCGAAGGGGCGGCAGGCCCGTTTGCACT
TTTTGGAGGACGAAGAGGACCAGAATGAGGAGGAGGACGTGTGGGATGAC
GACTATGATTTGGAGGAGGTGGAGGACGAGGAGAAGAAATAA

Synonyms

Publications