jgi.p|Nanoce1779_2|590919, mRNA_4955 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590919
Unique NamemRNA_4955
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length502
Alignment locationscaffold_12:115176..115845 -

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Properties
Property NameValue
TranscriptId591005
TrackFilteredModels2
ProteinId590919
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:115176..115845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590919gene_4955Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590919mRNA_4955-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4955CDS_4955Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4955 ID=mRNA_4955|Name=jgi.p|Nanoce1779_2|590919|organism=Nannochloropsis oceanica|type=mRNA|length=502bp
CTGGCACCTTCCAGCTGCTCTCCGCCCGCTGAACAATGCCTGTACTGCCT
GCTGGTGCTGCTGCTGCTGCTGCTGCTGCGGGTGCTGCTGCTGCGGGTGC
GGGTACTGCTGGTGCTGGTAGGCTCGGGGTTGAAATTACTATTGTTCTTG
CTGCTACTGCTGCTGCTGCTGCTTGTGCTGCTGCTTGTGTCATACCTGTA
GAAATAGTCGGGCTCTCCGATGTTGTAAATTTTGTGAGTACAGCGCGTCT
CACGCCGACGGGCATGCCATGGAAAGCCAATATCCGCCGCCGGAATGCCC
CTTGATCCATCATAGTATCCACCCAACGAGATCTGGTGCTCTTGGTGGTG
GGGGTGCAGCTGAGGCGGAATGAAGTAAGGCGAAGATAAACCTTCACAGC
CGCTGTGACATTCCTGCCTTCCTACTTGCGGCACAGCCAGCGGTTGTTGT
TGGAGTAGTGGTTGTTGTTGTTGTTGTGGTTGTTGTTGTTGTTGTTGTTG
TT
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protein sequence of jgi.p|Nanoce1779_2|590919

>mRNA_4955-protein ID=mRNA_4955-protein|Name=jgi.p|Nanoce1779_2|590919|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MPVLPAGAAAAAAAAGAAAAGAGTAGAGRLGVEITIVLAATAAAAACAAA
CVIPVEIVGLSDVVNFVSTARLTPTGMPWKANIRRRNAP*
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mRNA from alignment at scaffold_12:115176..115845-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4955 ID=mRNA_4955|Name=jgi.p|Nanoce1779_2|590919|organism=Nannochloropsis oceanica|type=mRNA|length=670bp|location=Sequence derived from alignment at scaffold_12:115176..115845- (Nannochloropsis oceanica)
CTGGCACCTTCCAGCTGCTCTCCGCCCGCTGAACAATGCCTGTACTGCCT
GCTGGTGCTGCTGCTGCTGCTGCTGCTGCGGGTGCTGCTGCTGCGGGTGC
GGGTACTGCTGGTGCTGGTAGGCTCGGGGTTGAAATTACTATTGTTCTTG
CTGCTACTGCTGCTGCTGCTGCTTGTGCTGCTGCTTGTGTCATACCTGTA
GAAATAGTCGGGCTCTCCGATGTTGTAAATTTTGTGAGTACAGCGCGTCT
CACGCCGACGGGCATGCTGTGATCAGATGTACGCATGAATAGAAAGAGAA
AGTGAGTTATGCATGTTTTCAAAGGGATAATCCCATTCCATGCCATTTAC
ACATGGTAGAATTCATTCTTCTCCTCTCCCCGCCCTCCTTTCTTCTTCAC
CTTTACTCCCATTCGACCAACGATCACAACATACCCATGGAAAGCCAATA
TCCGCCGCCGGAATGCCCCTTGATCCATCATAGTATCCACCCAACGAGAT
CTGGTGCTCTTGGTGGTGGGGGTGCAGCTGAGGCGGAATGAAGTAAGGCG
AAGATAAACCTTCACAGCCGCTGTGACATTCCTGCCTTCCTACTTGCGGC
ACAGCCAGCGGTTGTTGTTGGAGTAGTGGTTGTTGTTGTTGTTGTGGTTG
TTGTTGTTGTTGTTGTTGTT
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Coding sequence (CDS) from alignment at scaffold_12:115176..115845-

>mRNA_4955 ID=mRNA_4955|Name=jgi.p|Nanoce1779_2|590919|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_12:115176..115845- (Nannochloropsis oceanica)
CCATGGAAAGCCAATATCCGCCGCCGGAATGCCCCTTGAATGCCTGTACT
GCCTGCTGGTGCTGCTGCTGCTGCTGCTGCTGCGGGTGCTGCTGCTGCGG
GTGCGGGTACTGCTGGTGCTGGTAGGCTCGGGGTTGAAATTACTATTGTT
CTTGCTGCTACTGCTGCTGCTGCTGCTTGTGCTGCTGCTTGTGTCATACC
TGTAGAAATAGTCGGGCTCTCCGATGTTGTAAATTTTGTGAGTACAGCGC
GTCTCACGCCGACGGGCATGCCATGGAAAGCCAATATCCGCCGCCGGAAT
GCCCCTTGAATGCCTGTACTGCCTGCTGGTGCTGCTGCTGCTGCTGCTGC
TGCGGGTGCTGCTGCTGCGGGTGCGGGTACTGCTGGTGCTGGTAGGCTCG
GGGTTGAAATTACTATTGTTCTTGCTGCTACTGCTGCTGCTGCTGCTTGT
GCTGCTGCTTGTGTCATACCTGTAGAAATAGTCGGGCTCTCCGATGTTGT
AAATTTTGTGAGTACAGCGCGTCTCACGCCGACGGGCATG
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Synonyms
Publications