jgi.p|Nanoce1779_2|590918, mRNA_4954 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590918
Unique NamemRNA_4954
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length971
Alignment locationscaffold_12:113804..114774 -

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Properties
Property NameValue
TranscriptId591004
TrackFilteredModels2
ProteinId590918
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:113804..114774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590918gene_4954Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590918mRNA_4954-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4954CDS_4954Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4954 ID=mRNA_4954|Name=jgi.p|Nanoce1779_2|590918|organism=Nannochloropsis oceanica|type=mRNA|length=971bp
TGCTGCTGCTGCTGCTGCTGCTGCATTTTCTGTTGTTGTTGCTGTAGCTG
CTGCATTTTCTGTTGCTGCTGCTGATTGCAAGGGTGCTGTGCAGGGACGG
AGGGAGACACTGGGCGTGAAGTCTCTTGCTGCTGCTGATGCTGCTGCGAC
AATGATTGCAGCGGGTGTTGATGCGGGAAACGGCATCCCCCAATCTCCGC
CCGAAAAGAATTTCTGCTCTGCAACGTCAGCTTCTCCACCTCTACGGCCG
CCATCATGGTCGACAACACACCTATGCCTCGGTCATCTTGGACCGGGCCT
CTCAAAGCTGGCGGCCGCAGCGAGCGCGAAGGGATGAAGCCTGCAGCAGG
GACGAGGGACAGCGTCTGGGATTGAGCCTGACATTGCAGCGCCAACGACT
CCCCCCAAGGCGCGGTATGTTGCGTTCCCCCATCCATCAGATGCGACCAC
GAATTAGCGCTGGGACTGGACGGGCTCCAGGACTGGTCGCCTGCGTGCGA
CCCCTCAGCTACTTCTTTTGTCGTCATGTCTCCTTCTCGTCCTTCTCCCA
CTGCTGCTCCCGGGCCCGTCTGTGGGCTGCGATGCATTATGTGTGGATTT
CTTTGAAATTCCTCGTCGGTCAGGTGCAAGGCAGCGCTGATCTCCGTCTC
GTTGAAGCCCTTGCTCTCGAGGAAGGTGATGCGAGAGGACACGTGCATCT
GGGCCACGATAGGAACCGTCAGAAATTCCAGGGCCGTCGAGTCTTCCCCA
CCCCCGAACGAGCTGGCGCAATCATCCTCTGCATTTTCGTCCGCTACGGC
CCTTCCTGTGTTCATTGCCACACCACAGTGTCCCTGCAATCGTGACCCGC
CCGGAGCCAAGCCGTTGATATTTCGTGTGTGTCGATCCGCCTGCTTCGCA
CGTTGGCCTCTTGCCTTTGGTCCTGCACCGATCCTGTCAGAGATCGCGCC
AAGTTCTCCTACCTGTCTCCT
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protein sequence of jgi.p|Nanoce1779_2|590918

>mRNA_4954-protein ID=mRNA_4954-protein|Name=jgi.p|Nanoce1779_2|590918|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MRETASPNLRPKRISALQRQLLHLYGRHHGRQHTYASVILDRASQSWRPQ
RARRDEACSRDEGQRLGLSLTLQRQRLPPRRGMLRSPIHQMRPRISAGTG
RAPGLVACVRPLSYFFCRHVSFSSFSHCCSRARLWAAMHYVWISLKFLVG
QVQGSADLRLVEALALEEGDARGHVHLGHDRNRQKFQGRRVFPTPERAGA
IILCIFVRYGPSCVHCHTTVSLQS*
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mRNA from alignment at scaffold_12:113804..114774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4954 ID=mRNA_4954|Name=jgi.p|Nanoce1779_2|590918|organism=Nannochloropsis oceanica|type=mRNA|length=971bp|location=Sequence derived from alignment at scaffold_12:113804..114774- (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTGCTGCTGCATTTTCTGTTGTTGTTGCTGTAGCTG
CTGCATTTTCTGTTGCTGCTGCTGATTGCAAGGGTGCTGTGCAGGGACGG
AGGGAGACACTGGGCGTGAAGTCTCTTGCTGCTGCTGATGCTGCTGCGAC
AATGATTGCAGCGGGTGTTGATGCGGGAAACGGCATCCCCCAATCTCCGC
CCGAAAAGAATTTCTGCTCTGCAACGTCAGCTTCTCCACCTCTACGGCCG
CCATCATGGTCGACAACACACCTATGCCTCGGTCATCTTGGACCGGGCCT
CTCAAAGCTGGCGGCCGCAGCGAGCGCGAAGGGATGAAGCCTGCAGCAGG
GACGAGGGACAGCGTCTGGGATTGAGCCTGACATTGCAGCGCCAACGACT
CCCCCCAAGGCGCGGTATGTTGCGTTCCCCCATCCATCAGATGCGACCAC
GAATTAGCGCTGGGACTGGACGGGCTCCAGGACTGGTCGCCTGCGTGCGA
CCCCTCAGCTACTTCTTTTGTCGTCATGTCTCCTTCTCGTCCTTCTCCCA
CTGCTGCTCCCGGGCCCGTCTGTGGGCTGCGATGCATTATGTGTGGATTT
CTTTGAAATTCCTCGTCGGTCAGGTGCAAGGCAGCGCTGATCTCCGTCTC
GTTGAAGCCCTTGCTCTCGAGGAAGGTGATGCGAGAGGACACGTGCATCT
GGGCCACGATAGGAACCGTCAGAAATTCCAGGGCCGTCGAGTCTTCCCCA
CCCCCGAACGAGCTGGCGCAATCATCCTCTGCATTTTCGTCCGCTACGGC
CCTTCCTGTGTTCATTGCCACACCACAGTGTCCCTGCAATCGTGACCCGC
CCGGAGCCAAGCCGTTGATATTTCGTGTGTGTCGATCCGCCTGCTTCGCA
CGTTGGCCTCTTGCCTTTGGTCCTGCACCGATCCTGTCAGAGATCGCGCC
AAGTTCTCCTACCTGTCTCCT
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Coding sequence (CDS) from alignment at scaffold_12:113804..114774-

>mRNA_4954 ID=mRNA_4954|Name=jgi.p|Nanoce1779_2|590918|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_12:113804..114774- (Nannochloropsis oceanica)
ATGCGGGAAACGGCATCCCCCAATCTCCGCCCGAAAAGAATTTCTGCTCT
GCAACGTCAGCTTCTCCACCTCTACGGCCGCCATCATGGTCGACAACACA
CCTATGCCTCGGTCATCTTGGACCGGGCCTCTCAAAGCTGGCGGCCGCAG
CGAGCGCGAAGGGATGAAGCCTGCAGCAGGGACGAGGGACAGCGTCTGGG
ATTGAGCCTGACATTGCAGCGCCAACGACTCCCCCCAAGGCGCGGTATGT
TGCGTTCCCCCATCCATCAGATGCGACCACGAATTAGCGCTGGGACTGGA
CGGGCTCCAGGACTGGTCGCCTGCGTGCGACCCCTCAGCTACTTCTTTTG
TCGTCATGTCTCCTTCTCGTCCTTCTCCCACTGCTGCTCCCGGGCCCGTC
TGTGGGCTGCGATGCATTATGTGTGGATTTCTTTGAAATTCCTCGTCGGT
CAGGTGCAAGGCAGCGCTGATCTCCGTCTCGTTGAAGCCCTTGCTCTCGA
GGAAGGTGATGCGAGAGGACACGTGCATCTGGGCCACGATAGGAACCGTC
AGAAATTCCAGGGCCGTCGAGTCTTCCCCACCCCCGAACGAGCTGGCGCA
ATCATCCTCTGCATTTTCGTCCGCTACGGCCCTTCCTGTGTTCATTGCCA
CACCACAGTGTCCCTGCAATCGTGA
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Synonyms
Publications