jgi.p|Nanoce1779_2|47399, mRNA_4953 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|47399
Unique NamemRNA_4953
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length885
Alignment locationscaffold_12:109889..110773 -

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Properties
Property NameValue
TranscriptId47485
TrackFilteredModels2
ProteinId47399
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:109889..110773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|47399gene_4953Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|47399mRNA_4953-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4953CDS_4953Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4953 ID=mRNA_4953|Name=jgi.p|Nanoce1779_2|47399|organism=Nannochloropsis oceanica|type=mRNA|length=885bp
GGGAGGGGCGGAGGGAGGGGACGGTGGTCGAGTAGGGGGGAAAATGGATT
GTTCTTGCCACTGCAGCTTCAAGAGGCTGCTGCTGCTGGTGGGGGTGGTC
ATGGTGGTAATGGAAGCATGATAGGAAAAGGGGGCGTGGCGAGCAGTGTT
AGCAGCAGTGCTGTCAGTGTTGGGGGTCAGAATCCGCGGCTGGAGGTCTC
ACACGCCTGCAAGGACTTCTTGCGGTGGATGCGGGTCGAAGACGACGGCG
CTCGTGTGTCCAACTCGACCGCTTACGCCTACCATCTCATTCTGACTGAG
CTCCTTATGTCGGCTGGGTGTGAGCTTTCTCGCTTGAAGGGACCTGATGA
TCTAAAGCTTTACGTACTTAACCATCGAGAGGAAATTGAGGAGCTAGTGC
CGCCTAATCGAGCGCCCTACCCGAAGGAAAGGGGAGCCTGGAAGAAGGTG
TGGGAGTGGGCGAGTGGAGAGAGGATATGGGAGGAGGAAGGAGGGCATCA
TCTGGCGGGTGGGGGGTTGTTTTATTATCGAGGGAATGGAGTGAATGGAG
TGAGGACGCGGGTGAGGGGAAAGGAGGAGGAGGATGGGTTGGTGGCGACG
GGAGAGGGAGGGGAGGAGGAGGAAGAGATGGTGGAACGGCTGGTAGAGGA
GGAGAAGGAGGAGGTGGCAGAGGAGGAGGAAGAGGAGGGGGGGGGGGGAG
GGAGAAATGCAAGGTGAGGGGGACGAAGAGGAGAGTGACGAGGAGGGCGA
GGGAGAGGAGGAGGGCGAAGCGTCAGAAGATGAGCTGACCTCGGGCTGGA
GGGGGAGCAGGCGGCTAGCAGCGAAGCGGGCGCGCACTGGTACTGAGGGA
CGTCAAGCGGACACGATACAGGGACGGGAGGAAGG
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protein sequence of jgi.p|Nanoce1779_2|47399

>mRNA_4953-protein ID=mRNA_4953-protein|Name=jgi.p|Nanoce1779_2|47399|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
GRGGGRGRWSSRGENGLFLPLQLQEAAAAGGGGHGGNGSMIGKGGVASSV
SSSAVSVGGQNPRLEVSHACKDFLRWMRVEDDGARVSNSTAYAYHLILTE
LLMSAGCELSRLKGPDDLKLYVLNHREEIEELVPPNRAPYPKERGAWKKV
WEWASGERIWEEEGGHHLAGGGLFYYRGNGVNGVRTRVRGKEEEDGLVAT
GEGGEEEEEMVERLVEEEKEEVAEEEEEEGGGGGRNAR*
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mRNA from alignment at scaffold_12:109889..110773-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4953 ID=mRNA_4953|Name=jgi.p|Nanoce1779_2|47399|organism=Nannochloropsis oceanica|type=mRNA|length=885bp|location=Sequence derived from alignment at scaffold_12:109889..110773- (Nannochloropsis oceanica)
GGGAGGGGCGGAGGGAGGGGACGGTGGTCGAGTAGGGGGGAAAATGGATT
GTTCTTGCCACTGCAGCTTCAAGAGGCTGCTGCTGCTGGTGGGGGTGGTC
ATGGTGGTAATGGAAGCATGATAGGAAAAGGGGGCGTGGCGAGCAGTGTT
AGCAGCAGTGCTGTCAGTGTTGGGGGTCAGAATCCGCGGCTGGAGGTCTC
ACACGCCTGCAAGGACTTCTTGCGGTGGATGCGGGTCGAAGACGACGGCG
CTCGTGTGTCCAACTCGACCGCTTACGCCTACCATCTCATTCTGACTGAG
CTCCTTATGTCGGCTGGGTGTGAGCTTTCTCGCTTGAAGGGACCTGATGA
TCTAAAGCTTTACGTACTTAACCATCGAGAGGAAATTGAGGAGCTAGTGC
CGCCTAATCGAGCGCCCTACCCGAAGGAAAGGGGAGCCTGGAAGAAGGTG
TGGGAGTGGGCGAGTGGAGAGAGGATATGGGAGGAGGAAGGAGGGCATCA
TCTGGCGGGTGGGGGGTTGTTTTATTATCGAGGGAATGGAGTGAATGGAG
TGAGGACGCGGGTGAGGGGAAAGGAGGAGGAGGATGGGTTGGTGGCGACG
GGAGAGGGAGGGGAGGAGGAGGAAGAGATGGTGGAACGGCTGGTAGAGGA
GGAGAAGGAGGAGGTGGCAGAGGAGGAGGAAGAGGAGGGGGGGGGGGGAG
GGAGAAATGCAAGGTGAGGGGGACGAAGAGGAGAGTGACGAGGAGGGCGA
GGGAGAGGAGGAGGGCGAAGCGTCAGAAGATGAGCTGACCTCGGGCTGGA
GGGGGAGCAGGCGGCTAGCAGCGAAGCGGGCGCGCACTGGTACTGAGGGA
CGTCAAGCGGACACGATACAGGGACGGGAGGAAGG
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Coding sequence (CDS) from alignment at scaffold_12:109889..110773-

>mRNA_4953 ID=mRNA_4953|Name=jgi.p|Nanoce1779_2|47399|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_12:109889..110773- (Nannochloropsis oceanica)
GGGAGGGGCGGAGGGAGGGGACGGTGGTCGAGTAGGGGGGAAAATGGATT
GTTCTTGCCACTGCAGCTTCAAGAGGCTGCTGCTGCTGGTGGGGGTGGTC
ATGGTGGTAATGGAAGCATGATAGGAAAAGGGGGCGTGGCGAGCAGTGTT
AGCAGCAGTGCTGTCAGTGTTGGGGGTCAGAATCCGCGGCTGGAGGTCTC
ACACGCCTGCAAGGACTTCTTGCGGTGGATGCGGGTCGAAGACGACGGCG
CTCGTGTGTCCAACTCGACCGCTTACGCCTACCATCTCATTCTGACTGAG
CTCCTTATGTCGGCTGGGTGTGAGCTTTCTCGCTTGAAGGGACCTGATGA
TCTAAAGCTTTACGTACTTAACCATCGAGAGGAAATTGAGGAGCTAGTGC
CGCCTAATCGAGCGCCCTACCCGAAGGAAAGGGGAGCCTGGAAGAAGGTG
TGGGAGTGGGCGAGTGGAGAGAGGATATGGGAGGAGGAAGGAGGGCATCA
TCTGGCGGGTGGGGGGTTGTTTTATTATCGAGGGAATGGAGTGAATGGAG
TGAGGACGCGGGTGAGGGGAAAGGAGGAGGAGGATGGGTTGGTGGCGACG
GGAGAGGGAGGGGAGGAGGAGGAAGAGATGGTGGAACGGCTGGTAGAGGA
GGAGAAGGAGGAGGTGGCAGAGGAGGAGGAAGAGGAGGGGGGGGGGGGAG
GGAGAAATGCAAGGTGA
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Synonyms
Publications