jgi.p|Nanoce1779_2|590912, mRNA_4952 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590912
Unique NamemRNA_4952
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1543
Alignment locationscaffold_12:107835..109377 +

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Properties
Property NameValue
TranscriptId590998
TrackFilteredModels2
ProteinId590912
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:107835..109377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590912gene_4952Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590912mRNA_4952-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4952CDS_4952Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4952 ID=mRNA_4952|Name=jgi.p|Nanoce1779_2|590912|organism=Nannochloropsis oceanica|type=mRNA|length=1543bp
ACAGGAGAGCGCCCGGTCGTCTTGCCTGCTGTTTGTTAGTTCGAGTGCAG
GCGGTAGTAGCGTCTTCGTACACGTGCACCTCGCCTGCCTATTGCATAAT
GCTCTCTACCCTCTCCCGCCGAGCCGTTCTGGCCTCGGCCCGCTCCCAAC
GCGTGCCGCTGGTTGCATCCTTCCACTCAGGTCCTGTACGGCGTGATGCC
GCCCCCCCGACCGCAGTGGATGACCATGCCCGCAAACCCGCAGACGTGAC
TTTGGAGGGACCTTTAGACCGGTATGGGTTGACAGACTGGAAGCTGTACG
TACCCGTAGGTTTGGCGCTGTCGGTGCCCTTTTTGGCCAATGAGTGGATC
ATTCTGAGTGAGGAGACACAGCTGGTGGCGGCCTTTGTGGCGTTCGGCAC
CACGGTGTACAAGTACGCCGGTGGGGCCATAGGGCGTAGCTTGGATGAAC
GACAAGATGCGATCATTCAGGAAATCAACAGGTTGGAGGAGCTGGAACTG
AAACTTTACAAGGAGACTATTGATGCTGCCACGATCGAGAAGACGATAGT
AGAGGACCTGACAGCTTTGGAGGCCAAGAGCGAGGAGATGGCGCAGAAGC
TGGAGGTGGTACTGACGGGTGAGGTGAAGCACCGGATTCGCGAGCAGTTC
GTCCGATGGCTGGACGCGGCGGTGGCGTCGGAGAAGACGGGGAAGAAGGC
CTTGGTGCAATCTTTCCTTGATCAGACCGCTGTCCAGGTCACCAAGAACT
TTGCCTCGGATGCCAAGCTCAAGAAAGCGGCTGTCGAGCAAGTGGTTGCC
ATTCTGAAAGACCCTGCGGCTAAGCAGGCTGATTTGGTAGGTGCGGAGTT
TGAGCGTGTGGGGAAGAAATTGTGGGATGACCTTGTGAAGAAGGAGCTAG
CGGGCGTGGCGCCTAAGGAGCATGTGGCGGCACTGACGGCCGAGATCAAG
GCGATCAAGGCTAAGGGCCCTGCGCTCTCGGAGATGGATTTGGACAATGC
CGTGCGTGTTTACCACACTGCAATGAAAGGTGGTGTGAAACCGGCGATGC
TTAAGTAGAGAGGAGGAAGGCATGAGGGAGAGAGAGGGGTGGTTGATGTG
GGAGCTTTTGTTTCTGGGTCGGGGATATAGGTTCTGTGTCTCGGAGGTGG
ATTTGGACAATGCCGTGCGTGTTCACCACACTGCAATGAAAGGTGGTGTG
GAACCGGCGATGCTTAAGTAGAGAGGAGGAAGGCATGAGGGAGAGAGAGG
GGTGGTTGATGTGGGAGCTTTTGTTTCTGTGTCGGGGATATAGGGTGAGG
GAGGGATGGGAGGAATAGAAGTGTGTTTTTGGTTCCGTGCGAGGAGAAAG
GGCGTAGCATAGTATTCATTCGTGGTGTAGAGGAAAGAAAGACGAGATGT
GTTGTTTTGTTGCCAAGCCTCATGGTCTGTGTAGGTTGTCGGTTGCCGTG
GCACCAGAAGAGATAAAGAAGGAGCCAAATGAGGCCATCAGAAGAGAGAT
GAGATGATGAGCAAAAAAGCTACGAATTGGTGCAGCAGGCTGA
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protein sequence of jgi.p|Nanoce1779_2|590912

>mRNA_4952-protein ID=mRNA_4952-protein|Name=jgi.p|Nanoce1779_2|590912|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MLSTLSRRAVLASARSQRVPLVASFHSGPVRRDAAPPTAVDDHARKPADV
TLEGPLDRYGLTDWKLYVPVGLALSVPFLANEWIILSEETQLVAAFVAFG
TTVYKYAGGAIGRSLDERQDAIIQEINRLEELELKLYKETIDAATIEKTI
VEDLTALEAKSEEMAQKLEVVLTGEVKHRIREQFVRWLDAAVASEKTGKK
ALVQSFLDQTAVQVTKNFASDAKLKKAAVEQVVAILKDPAAKQADLVGAE
FERVGKKLWDDLVKKELAGVAPKEHVAALTAEIKAIKAKGPALSEMDLDN
AVRVYHTAMKGGVKPAMLK*
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mRNA from alignment at scaffold_12:107835..109377+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4952 ID=mRNA_4952|Name=jgi.p|Nanoce1779_2|590912|organism=Nannochloropsis oceanica|type=mRNA|length=1543bp|location=Sequence derived from alignment at scaffold_12:107835..109377+ (Nannochloropsis oceanica)
ACAGGAGAGCGCCCGGTCGTCTTGCCTGCTGTTTGTTAGTTCGAGTGCAG
GCGGTAGTAGCGTCTTCGTACACGTGCACCTCGCCTGCCTATTGCATAAT
GCTCTCTACCCTCTCCCGCCGAGCCGTTCTGGCCTCGGCCCGCTCCCAAC
GCGTGCCGCTGGTTGCATCCTTCCACTCAGGTCCTGTACGGCGTGATGCC
GCCCCCCCGACCGCAGTGGATGACCATGCCCGCAAACCCGCAGACGTGAC
TTTGGAGGGACCTTTAGACCGGTATGGGTTGACAGACTGGAAGCTGTACG
TACCCGTAGGTTTGGCGCTGTCGGTGCCCTTTTTGGCCAATGAGTGGATC
ATTCTGAGTGAGGAGACACAGCTGGTGGCGGCCTTTGTGGCGTTCGGCAC
CACGGTGTACAAGTACGCCGGTGGGGCCATAGGGCGTAGCTTGGATGAAC
GACAAGATGCGATCATTCAGGAAATCAACAGGTTGGAGGAGCTGGAACTG
AAACTTTACAAGGAGACTATTGATGCTGCCACGATCGAGAAGACGATAGT
AGAGGACCTGACAGCTTTGGAGGCCAAGAGCGAGGAGATGGCGCAGAAGC
TGGAGGTGGTACTGACGGGTGAGGTGAAGCACCGGATTCGCGAGCAGTTC
GTCCGATGGCTGGACGCGGCGGTGGCGTCGGAGAAGACGGGGAAGAAGGC
CTTGGTGCAATCTTTCCTTGATCAGACCGCTGTCCAGGTCACCAAGAACT
TTGCCTCGGATGCCAAGCTCAAGAAAGCGGCTGTCGAGCAAGTGGTTGCC
ATTCTGAAAGACCCTGCGGCTAAGCAGGCTGATTTGGTAGGTGCGGAGTT
TGAGCGTGTGGGGAAGAAATTGTGGGATGACCTTGTGAAGAAGGAGCTAG
CGGGCGTGGCGCCTAAGGAGCATGTGGCGGCACTGACGGCCGAGATCAAG
GCGATCAAGGCTAAGGGCCCTGCGCTCTCGGAGATGGATTTGGACAATGC
CGTGCGTGTTTACCACACTGCAATGAAAGGTGGTGTGAAACCGGCGATGC
TTAAGTAGAGAGGAGGAAGGCATGAGGGAGAGAGAGGGGTGGTTGATGTG
GGAGCTTTTGTTTCTGGGTCGGGGATATAGGTTCTGTGTCTCGGAGGTGG
ATTTGGACAATGCCGTGCGTGTTCACCACACTGCAATGAAAGGTGGTGTG
GAACCGGCGATGCTTAAGTAGAGAGGAGGAAGGCATGAGGGAGAGAGAGG
GGTGGTTGATGTGGGAGCTTTTGTTTCTGTGTCGGGGATATAGGGTGAGG
GAGGGATGGGAGGAATAGAAGTGTGTTTTTGGTTCCGTGCGAGGAGAAAG
GGCGTAGCATAGTATTCATTCGTGGTGTAGAGGAAAGAAAGACGAGATGT
GTTGTTTTGTTGCCAAGCCTCATGGTCTGTGTAGGTTGTCGGTTGCCGTG
GCACCAGAAGAGATAAAGAAGGAGCCAAATGAGGCCATCAGAAGAGAGAT
GAGATGATGAGCAAAAAAGCTACGAATTGGTGCAGCAGGCTGA
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Coding sequence (CDS) from alignment at scaffold_12:107835..109377+

>mRNA_4952 ID=mRNA_4952|Name=jgi.p|Nanoce1779_2|590912|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_12:107835..109377+ (Nannochloropsis oceanica)
ATGCTCTCTACCCTCTCCCGCCGAGCCGTTCTGGCCTCGGCCCGCTCCCA
ACGCGTGCCGCTGGTTGCATCCTTCCACTCAGGTCCTGTACGGCGTGATG
CCGCCCCCCCGACCGCAGTGGATGACCATGCCCGCAAACCCGCAGACGTG
ACTTTGGAGGGACCTTTAGACCGGTATGGGTTGACAGACTGGAAGCTGTA
CGTACCCGTAGGTTTGGCGCTGTCGGTGCCCTTTTTGGCCAATGAGTGGA
TCATTCTGAGTGAGGAGACACAGCTGGTGGCGGCCTTTGTGGCGTTCGGC
ACCACGGTGTACAAGTACGCCGGTGGGGCCATAGGGCGTAGCTTGGATGA
ACGACAAGATGCGATCATTCAGGAAATCAACAGGTTGGAGGAGCTGGAAC
TGAAACTTTACAAGGAGACTATTGATGCTGCCACGATCGAGAAGACGATA
GTAGAGGACCTGACAGCTTTGGAGGCCAAGAGCGAGGAGATGGCGCAGAA
GCTGGAGGTGGTACTGACGGGTGAGGTGAAGCACCGGATTCGCGAGCAGT
TCGTCCGATGGCTGGACGCGGCGGTGGCGTCGGAGAAGACGGGGAAGAAG
GCCTTGGTGCAATCTTTCCTTGATCAGACCGCTGTCCAGGTCACCAAGAA
CTTTGCCTCGGATGCCAAGCTCAAGAAAGCGGCTGTCGAGCAAGTGGTTG
CCATTCTGAAAGACCCTGCGGCTAAGCAGGCTGATTTGGTAGGTGCGGAG
TTTGAGCGTGTGGGGAAGAAATTGTGGGATGACCTTGTGAAGAAGGAGCT
AGCGGGCGTGGCGCCTAAGGAGCATGTGGCGGCACTGACGGCCGAGATCA
AGGCGATCAAGGCTAAGGGCCCTGCGCTCTCGGAGATGGATTTGGACAAT
GCCGTGCGTGTTTACCACACTGCAATGAAAGGTGGTGTGAAACCGGCGAT
GCTTAAGTAG
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Synonyms
Publications