jgi.p|Nanoce1779_2|590906, mRNA_4949 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590906
Unique Name	mRNA_4949
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1224
Alignment location	scaffold_12:103751..104974 +

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Properties


Property Name	Value
TranscriptId	590992
Track	FilteredModels2
ProteinId	590906

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:103751..104974 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590906	gene_4949	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590906	mRNA_4949-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4949	CDS_4949	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:103751..104974+
coding sequence from alignment at scaffold_12:103751..104974+

mRNA sequence

>mRNA_4949 ID=mRNA_4949|Name=jgi.p|Nanoce1779_2|590906|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp
TCGGTGGGTGGTCATGACGTGCCTATGACTATTTTGGAGGCAGTGCTGAA
GCAGACGGGTGTGTACGCGCCCATGCGCAAGGGCCGCTTGTCCGTCTTCT
GGGGAGATCAAGTGTTTGTCCCGACTGTGCCTGTCGCTGCATATGCGCCC
GCTCATCATACTGATATTTTGTGTTCTTTGGGCCCGATGCCCTCGGCGGA
AGAGTGGGAAGCGAAGGGTCTTGAGAAGTACGGGCTCATTGCTGTTAATT
CGAATGAGGAGGCGGCTCAGATTGAGAAGGTCACGCATGCCACGGCCAAG
AGATTGCTTGGAAGCTTTGGGGCCGTGACGAAAGTGGGAGTATCGCTTGG
TTCGTTCTCGTTGAGCGCTTCGATATTGGTGACGTTGCTGGAGGAGTTCA
AGACCGAGTTGATTGAGAAGACAGCGAAGCTGGACACAGACCCGGGGCTG
TGGATGGCATTCACCCTTTCTAAAAAGGCGTATATTCAGCTGCTTGAAGC
GAAGAAGATACCGCCTTCAGAGTCGGGGCCACATTTTGATCGAATGCAGG
CAATGCTGGCGAGATTCCGGGCAGCGAGAACGGGAGGGGAGGAGAGCGGA
ATGGATTTGTTTGGTGCTGTGGACATTGGGCTAGGTGCTTATTGGTGGGA
TTACGGGCAATTGAAACTCTACTTCATGAACAATATAAGTGTCACACACA
CGGATGAGGAGTCTCGGTTGTATCGTGCGTTTTTGGGCGTCCCGGTGGGG
AGGCGTGTGAGGGCGGAGGTAGGGGAGGGGGTGGGGGTGGATGAGGAGTC
GGTGCTGTCGGCTGTCCGGGTGAAAGGCGGGACCATCGCAAACAGTGTGC
TAACAAATGTGAGCGCCAAGGTAGTGGAGGCAGAGGGGGCGGTCCTCGTG
AACGTGACGGCGAGGAAGGTGGTGGCGGGGAGGGGGGCAGTGCTTTATAA
CGTCGTGGACGACTCGGATGAGGGCTTGGTGCTGGGGGAGGGAGAAGTGT
TGGTGGGTGTTTTCGACGAGGCGGGGAGGCAGCAGCAGATGGCTAGTCAC
GCTGAGAAGGATGGTGGTGTGTGGTGGAAGAAGGAGATTCGTTCTGGCCA
ACCTACGTTTGAGCAGGTCTACCTGGCCAATCGCGAGGTGGATGTGGCGC
TGATCGAGGCCAAATCGCAGGCAGCGCATGCCAAGCTACGGGAGGCGTTG
TTTGCTGAGGTGTAAGGGGGTGGA

protein sequence of jgi.p|Nanoce1779_2|590906

>mRNA_4949-protein ID=mRNA_4949-protein|Name=jgi.p|Nanoce1779_2|590906|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MTILEAVLKQTGVYAPMRKGRLSVFWGDQVFVPTVPVAAYAPAHHTDILC
SLGPMPSAEEWEAKGLEKYGLIAVNSNEEAAQIEKVTHATAKRLLGSFGA
VTKVGVSLGSFSLSASILVTLLEEFKTELIEKTAKLDTDPGLWMAFTLSK
KAYIQLLEAKKIPPSESGPHFDRMQAMLARFRAARTGGEESGMDLFGAVD
IGLGAYWWDYGQLKLYFMNNISVTHTDEESRLYRAFLGVPVGRRVRAEVG
EGVGVDEESVLSAVRVKGGTIANSVLTNVSAKVVEAEGAVLVNVTARKVV
AGRGAVLYNVVDDSDEGLVLGEGEVLVGVFDEAGRQQQMASHAEKDGGVW
WKKEIRSGQPTFEQVYLANREVDVALIEAKSQAAHAKLREALFAEV*

mRNA from alignment at scaffold_12:103751..104974+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4949 ID=mRNA_4949|Name=jgi.p|Nanoce1779_2|590906|organism=Nannochloropsis oceanica|type=mRNA|length=1224bp|location=Sequence derived from alignment at scaffold_12:103751..104974+ (Nannochloropsis oceanica)
TCGGTGGGTGGTCATGACGTGCCTATGACTATTTTGGAGGCAGTGCTGAA
GCAGACGGGTGTGTACGCGCCCATGCGCAAGGGCCGCTTGTCCGTCTTCT
GGGGAGATCAAGTGTTTGTCCCGACTGTGCCTGTCGCTGCATATGCGCCC
GCTCATCATACTGATATTTTGTGTTCTTTGGGCCCGATGCCCTCGGCGGA
AGAGTGGGAAGCGAAGGGTCTTGAGAAGTACGGGCTCATTGCTGTTAATT
CGAATGAGGAGGCGGCTCAGATTGAGAAGGTCACGCATGCCACGGCCAAG
AGATTGCTTGGAAGCTTTGGGGCCGTGACGAAAGTGGGAGTATCGCTTGG
TTCGTTCTCGTTGAGCGCTTCGATATTGGTGACGTTGCTGGAGGAGTTCA
AGACCGAGTTGATTGAGAAGACAGCGAAGCTGGACACAGACCCGGGGCTG
TGGATGGCATTCACCCTTTCTAAAAAGGCGTATATTCAGCTGCTTGAAGC
GAAGAAGATACCGCCTTCAGAGTCGGGGCCACATTTTGATCGAATGCAGG
CAATGCTGGCGAGATTCCGGGCAGCGAGAACGGGAGGGGAGGAGAGCGGA
ATGGATTTGTTTGGTGCTGTGGACATTGGGCTAGGTGCTTATTGGTGGGA
TTACGGGCAATTGAAACTCTACTTCATGAACAATATAAGTGTCACACACA
CGGATGAGGAGTCTCGGTTGTATCGTGCGTTTTTGGGCGTCCCGGTGGGG
AGGCGTGTGAGGGCGGAGGTAGGGGAGGGGGTGGGGGTGGATGAGGAGTC
GGTGCTGTCGGCTGTCCGGGTGAAAGGCGGGACCATCGCAAACAGTGTGC
TAACAAATGTGAGCGCCAAGGTAGTGGAGGCAGAGGGGGCGGTCCTCGTG
AACGTGACGGCGAGGAAGGTGGTGGCGGGGAGGGGGGCAGTGCTTTATAA
CGTCGTGGACGACTCGGATGAGGGCTTGGTGCTGGGGGAGGGAGAAGTGT
TGGTGGGTGTTTTCGACGAGGCGGGGAGGCAGCAGCAGATGGCTAGTCAC
GCTGAGAAGGATGGTGGTGTGTGGTGGAAGAAGGAGATTCGTTCTGGCCA
ACCTACGTTTGAGCAGGTCTACCTGGCCAATCGCGAGGTGGATGTGGCGC
TGATCGAGGCCAAATCGCAGGCAGCGCATGCCAAGCTACGGGAGGCGTTG
TTTGCTGAGGTGTAAGGGGGTGGA

Coding sequence (CDS) from alignment at scaffold_12:103751..104974+

>mRNA_4949 ID=mRNA_4949|Name=jgi.p|Nanoce1779_2|590906|organism=Nannochloropsis oceanica|type=CDS|length=1191bp|location=Sequence derived from alignment at scaffold_12:103751..104974+ (Nannochloropsis oceanica)
ATGACTATTTTGGAGGCAGTGCTGAAGCAGACGGGTGTGTACGCGCCCAT
GCGCAAGGGCCGCTTGTCCGTCTTCTGGGGAGATCAAGTGTTTGTCCCGA
CTGTGCCTGTCGCTGCATATGCGCCCGCTCATCATACTGATATTTTGTGT
TCTTTGGGCCCGATGCCCTCGGCGGAAGAGTGGGAAGCGAAGGGTCTTGA
GAAGTACGGGCTCATTGCTGTTAATTCGAATGAGGAGGCGGCTCAGATTG
AGAAGGTCACGCATGCCACGGCCAAGAGATTGCTTGGAAGCTTTGGGGCC
GTGACGAAAGTGGGAGTATCGCTTGGTTCGTTCTCGTTGAGCGCTTCGAT
ATTGGTGACGTTGCTGGAGGAGTTCAAGACCGAGTTGATTGAGAAGACAG
CGAAGCTGGACACAGACCCGGGGCTGTGGATGGCATTCACCCTTTCTAAA
AAGGCGTATATTCAGCTGCTTGAAGCGAAGAAGATACCGCCTTCAGAGTC
GGGGCCACATTTTGATCGAATGCAGGCAATGCTGGCGAGATTCCGGGCAG
CGAGAACGGGAGGGGAGGAGAGCGGAATGGATTTGTTTGGTGCTGTGGAC
ATTGGGCTAGGTGCTTATTGGTGGGATTACGGGCAATTGAAACTCTACTT
CATGAACAATATAAGTGTCACACACACGGATGAGGAGTCTCGGTTGTATC
GTGCGTTTTTGGGCGTCCCGGTGGGGAGGCGTGTGAGGGCGGAGGTAGGG
GAGGGGGTGGGGGTGGATGAGGAGTCGGTGCTGTCGGCTGTCCGGGTGAA
AGGCGGGACCATCGCAAACAGTGTGCTAACAAATGTGAGCGCCAAGGTAG
TGGAGGCAGAGGGGGCGGTCCTCGTGAACGTGACGGCGAGGAAGGTGGTG
GCGGGGAGGGGGGCAGTGCTTTATAACGTCGTGGACGACTCGGATGAGGG
CTTGGTGCTGGGGGAGGGAGAAGTGTTGGTGGGTGTTTTCGACGAGGCGG
GGAGGCAGCAGCAGATGGCTAGTCACGCTGAGAAGGATGGTGGTGTGTGG
TGGAAGAAGGAGATTCGTTCTGGCCAACCTACGTTTGAGCAGGTCTACCT
GGCCAATCGCGAGGTGGATGTGGCGCTGATCGAGGCCAAATCGCAGGCAG
CGCATGCCAAGCTACGGGAGGCGTTGTTTGCTGAGGTGTAA

Synonyms

Publications