jgi.p|Nanoce1779_2|47348, mRNA_4947 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|47348
Unique NamemRNA_4947
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1697
Alignment locationscaffold_12:99226..101078 -

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Properties
Property NameValue
TranscriptId47434
TrackFilteredModels2
ProteinId47348
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:99226..101078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|47348gene_4947Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|47348mRNA_4947-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4947CDS_4947Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4947 ID=mRNA_4947|Name=jgi.p|Nanoce1779_2|47348|organism=Nannochloropsis oceanica|type=mRNA|length=1697bp
TCTGCCTCCTTTCCATCACACATCAAATTGCACACAGGCTATCTTTTCTC
GCGCCTTGTCGCAGATCGCCGAAATCTACTCCTTCACGGCTTTAGGGCTT
AGTGTCTATCGCTTCCAAACCAGCGATTTCTCTTTCCGTTACCTCTGTAT
CTCTTTCCTTGCCATGGCCCTTGCGCGAGCGGTTGTGGTGTTCGGGCTTT
TCGGGTTAGCCATGTATTTTGACCGAAAGCACATGTTCAAGGAGGCATGG
AAGGACCAGCTCGTTTTATTTGGGGCGGGGCTTGTGAGGGGCGCAATTAC
GTGGGCGCAGGCCTTGCAGCTACCAGGAGGCAATCGGCGGGTCCTTATCT
CCACCACTCTTCAAGTCATCTCCATCACGCTTGTAGTAGTAGGTGGGGCC
CTACCATCCCTGCTTCGAGCCCTGGGCATGGGTGAAACCGAATCTCTTGA
CCCGGGCGAGATGGAAGGAGTAACCGAGGCAGTCACCTGCAGTGCCTATG
ACGTGGAAGGGGAAGACTTGCCGAATAGCAGCAGCATTGGTGATTTTCAG
GACGCAATGCCCTTTCTCTCACATACAGCCTCGTCGGAAGACGTCCGCCC
GCTCCTTCTCAGCAATCACAGTAGTCTGAGCAGCAACGGTGGGGGTAGCA
TTCGAGTGGTCAAGCAGCAGCAGCAGCAGCAGTTGGACCCCTTTCCTGAC
GCGCCCCCCCGTCTACGACGGCCGGGGGAAGAGGCGACATTGTTGGACGA
GAGCTGGGTGGTGGATGGGAGCCGCGTATTCGAGGGACGGGTGCACAGAA
TGTGGGCTGGGATTGACGAGGCTTTGAAGCCTTTCTTTGGGGGCCGCAGT
CGTTTACCGACTTTCCACGGCTCGTATGTGAGCTACAGTAATAACACTGG
GGGGAGCTATGCGAGGAGCAGCGGTGCGAGCCTCATAACAGTCCGTCCGG
GTCATGAAGGGTACGGCACTTTGGCTGCTTTACCGCCATCGGCAGCAGCA
ACAGCAACAATGGCAGAATTAGCTGTTGCTGCAGCAGCAGCAGCAAGAGC
AGGAGGAGGGGAAGGAGGAGGAAGAGGGAAGGTGGGTGTGGCCTTCCCGG
ATGGTGGCATGCAGAAAGGTGGGAGTGGTCAAGGCGCTGGCGATGGTCTT
ATTGGTGGTGGCGCCAACACCAGAACCACCAGTAGAAGCACCAGTCGCGG
CAAAATCGATCCTTATGCTTTGCAAGCGGCCTTTATCTCCAAAGGCTTTC
GCGTCCCAAAGCGGACCTTGAGCAAGCTGGCCAGTCAGAAACCTGACGGC
TCCTCGGAACGGAAAATGCGGGTTAGTAAGAGCTCGAATGCGGCCAAGAA
ATAGTGGGACGTGCGGCCGACAATGGTGCAGGTGCAACGGGTCCAAATTC
CTTGCTGTCTTGTCATGCAGTCGATGGGCGTGGATGAAGTAATCAGAATG
GTACAGGTGGTACAGGCGCGAAATAAATAGGAATGACGTGTTTATCAGCT
TTAGAAATGTTTTGTGTACAGATTAGTCCGCCTAGAGGAAAATGAAATCA
AAATTTCTTGTAATTGCAAGCGAATGAATGGAATGGAAGGTATGAGTCAG
GCATGCAAATAAATGGTAAACCGAAGAGCAGAGTCAAATTTTATACCCAG
AAATACAACCCCAAAAGATTAAATATGGGTGAGCAATAGTTCCCGTG
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protein sequence of jgi.p|Nanoce1779_2|47348

>mRNA_4947-protein ID=mRNA_4947-protein|Name=jgi.p|Nanoce1779_2|47348|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MALARAVVVFGLFGLAMYFDRKHMFKEAWKDQLVLFGAGLVRGAITWAQA
LQLPGGNRRVLISTTLQVISITLVVVGGALPSLLRALGMGETESLDPGEM
EGVTEAVTCSAYDVEGEDLPNSSSIGDFQDAMPFLSHTASSEDVRPLLLS
NHSSLSSNGGGSIRVVKQQQQQQLDPFPDAPPRLRRPGEEATLLDESWVV
DGSRVFEGRVHRMWAGIDEALKPFFGGRSRLPTFHGSYVSYSNNTGGSYA
RSSGASLITVRPGHEGYGTLAALPPSAAATATMAELAVAAAAAARAGGGE
GGGRGKVGVAFPDGGMQKGGSGQGAGDGLIGGGANTRTTSRSTSRGKIDP
YALQAAFISKGFRVPKRTLSKLASQKPDGSSERKMRVSKSSNAAKK*
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mRNA from alignment at scaffold_12:99226..101078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4947 ID=mRNA_4947|Name=jgi.p|Nanoce1779_2|47348|organism=Nannochloropsis oceanica|type=mRNA|length=1853bp|location=Sequence derived from alignment at scaffold_12:99226..101078- (Nannochloropsis oceanica)
TCTGCCTCCTTTCCATCACACATCAAATTGCACACAGGCTATCTTTTCTC
GCGCCTTGTCGCAGATCGCCGAAATCTACTCCTTCACGGCTTTAGGGCTT
AGTGTCTATCGCTTCCAAACCAGCGATTTCTCTTTCCGTTACCTCTGTAT
CTCTTTCCTTGCCATGGCCCTTGCGCGAGCGGTTGTGGTGTTCGGGCTTT
TCGGGTTAGCCATGTATTTTGACCGAAAGCACATGTTCAAGGAGGCATGG
AAGGACCAGCTCGTTTTATTTGGGGCGGGGCTTGTGAGGGGCGCAATTAC
GTGGGCGCAGGTACGCATGTTATTTTGATAAGCGGTGCAGGGGGCTACGG
TCGTATCCCTGTGTGCCTGCGCTGCAGGTGCACCTCACGGAAGTGTTTTT
CCTGTCCTGTTTCCCTTTGATATTCCAATCCTCGCTCATCTCACCCTTTC
CTATCCGTAAATGCAGGCCTTGCAGCTACCAGGAGGCAATCGGCGGGTCC
TTATCTCCACCACTCTTCAAGTCATCTCCATCACGCTTGTAGTAGTAGGT
GGGGCCCTACCATCCCTGCTTCGAGCCCTGGGCATGGGTGAAACCGAATC
TCTTGACCCGGGCGAGATGGAAGGAGTAACCGAGGCAGTCACCTGCAGTG
CCTATGACGTGGAAGGGGAAGACTTGCCGAATAGCAGCAGCATTGGTGAT
TTTCAGGACGCAATGCCCTTTCTCTCACATACAGCCTCGTCGGAAGACGT
CCGCCCGCTCCTTCTCAGCAATCACAGTAGTCTGAGCAGCAACGGTGGGG
GTAGCATTCGAGTGGTCAAGCAGCAGCAGCAGCAGCAGTTGGACCCCTTT
CCTGACGCGCCCCCCCGTCTACGACGGCCGGGGGAAGAGGCGACATTGTT
GGACGAGAGCTGGGTGGTGGATGGGAGCCGCGTATTCGAGGGACGGGTGC
ACAGAATGTGGGCTGGGATTGACGAGGCTTTGAAGCCTTTCTTTGGGGGC
CGCAGTCGTTTACCGACTTTCCACGGCTCGTATGTGAGCTACAGTAATAA
CACTGGGGGGAGCTATGCGAGGAGCAGCGGTGCGAGCCTCATAACAGTCC
GTCCGGGTCATGAAGGGTACGGCACTTTGGCTGCTTTACCGCCATCGGCA
GCAGCAACAGCAACAATGGCAGAATTAGCTGTTGCTGCAGCAGCAGCAGC
AAGAGCAGGAGGAGGGGAAGGAGGAGGAAGAGGGAAGGTGGGTGTGGCCT
TCCCGGATGGTGGCATGCAGAAAGGTGGGAGTGGTCAAGGCGCTGGCGAT
GGTCTTATTGGTGGTGGCGCCAACACCAGAACCACCAGTAGAAGCACCAG
TCGCGGCAAAATCGATCCTTATGCTTTGCAAGCGGCCTTTATCTCCAAAG
GCTTTCGCGTCCCAAAGCGGACCTTGAGCAAGCTGGCCAGTCAGAAACCT
GACGGCTCCTCGGAACGGAAAATGCGGGTTAGTAAGAGCTCGAATGCGGC
CAAGAAATAGTGGGACGTGCGGCCGACAATGGTGCAGGTGCAACGGGTCC
AAATTCCTTGCTGTCTTGTCATGCAGTCGATGGGCGTGGATGAAGTAATC
AGAATGGTACAGGTGGTACAGGCGCGAAATAAATAGGAATGACGTGTTTA
TCAGCTTTAGAAATGTTTTGTGTACAGATTAGTCCGCCTAGAGGAAAATG
AAATCAAAATTTCTTGTAATTGCAAGCGAATGAATGGAATGGAAGGTATG
AGTCAGGCATGCAAATAAATGGTAAACCGAAGAGCAGAGTCAAATTTTAT
ACCCAGAAATACAACCCCAAAAGATTAAATATGGGTGAGCAATAGTTCCC
GTG
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Coding sequence (CDS) from alignment at scaffold_12:99226..101078-

>mRNA_4947 ID=mRNA_4947|Name=jgi.p|Nanoce1779_2|47348|organism=Nannochloropsis oceanica|type=CDS|length=2382bp|location=Sequence derived from alignment at scaffold_12:99226..101078- (Nannochloropsis oceanica)
GCCTTGCAGCTACCAGGAGGCAATCGGCGGGTCCTTATCTCCACCACTCT
TCAAGTCATCTCCATCACGCTTGTAGTAGTAGGTGGGGCCCTACCATCCC
TGCTTCGAGCCCTGGGCATGGGTGAAACCGAATCTCTTGACCCGGGCGAG
ATGGAAGGAGTAACCGAGGCAGTCACCTGCAGTGCCTATGACGTGGAAGG
GGAAGACTTGCCGAATAGCAGCAGCATTGGTGATTTTCAGGACGCAATGC
CCTTTCTCTCACATACAGCCTCGTCGGAAGACGTCCGCCCGCTCCTTCTC
AGCAATCACAGTAGTCTGAGCAGCAACGGTGGGGGTAGCATTCGAGTGGT
CAAGCAGCAGCAGCAGCAGCAGTTGGACCCCTTTCCTGACGCGCCCCCCC
GTCTACGACGGCCGGGGGAAGAGGCGACATTGTTGGACGAGAGCTGGGTG
GTGGATGGGAGCCGCGTATTCGAGGGACGGGTGCACAGAATGTGGGCTGG
GATTGACGAGGCTTTGAAGCCTTTCTTTGGGGGCCGCAGTCGTTTACCGA
CTTTCCACGGCTCGTATGTGAGCTACAGTAATAACACTGGGGGGAGCTAT
GCGAGGAGCAGCGGTGCGAGCCTCATAACAGTCCGTCCGGGTCATGAAGG
GTACGGCACTTTGGCTGCTTTACCGCCATCGGCAGCAGCAACAGCAACAA
TGGCAGAATTAGCTGTTGCTGCAGCAGCAGCAGCAAGAGCAGGAGGAGGG
GAAGGAGGAGGAAGAGGGAAGGTGGGTGTGGCCTTCCCGGATGGTGGCAT
GCAGAAAGGTGGGAGTGGTCAAGGCGCTGGCGATGGTCTTATTGGTGGTG
GCGCCAACACCAGAACCACCAGTAGAAGCACCAGTCGCGGCAAAATCGAT
CCTTATGCTTTGCAAGCGGCCTTTATCTCCAAAGGCTTTCGCGTCCCAAA
GCGGACCTTGAGCAAGCTGGCCAGTCAGAAACCTGACGGCTCCTCGGAAC
GGAAAATGCGGGTTAGTAAGAGCTCGAATGCGGCCAAGAAATAGATGGCC
CTTGCGCGAGCGGTTGTGGTGTTCGGGCTTTTCGGGTTAGCCATGTATTT
TGACCGAAAGCACATGTTCAAGGAGGCATGGAAGGACCAGCTCGTTTTAT
TTGGGGCGGGGCTTGTGAGGGGCGCAATTACGTGGGCGCAGGCCTTGCAG
CTACCAGGAGGCAATCGGCGGGTCCTTATCTCCACCACTCTTCAAGTCAT
CTCCATCACGCTTGTAGTAGTAGGTGGGGCCCTACCATCCCTGCTTCGAG
CCCTGGGCATGGGTGAAACCGAATCTCTTGACCCGGGCGAGATGGAAGGA
GTAACCGAGGCAGTCACCTGCAGTGCCTATGACGTGGAAGGGGAAGACTT
GCCGAATAGCAGCAGCATTGGTGATTTTCAGGACGCAATGCCCTTTCTCT
CACATACAGCCTCGTCGGAAGACGTCCGCCCGCTCCTTCTCAGCAATCAC
AGTAGTCTGAGCAGCAACGGTGGGGGTAGCATTCGAGTGGTCAAGCAGCA
GCAGCAGCAGCAGTTGGACCCCTTTCCTGACGCGCCCCCCCGTCTACGAC
GGCCGGGGGAAGAGGCGACATTGTTGGACGAGAGCTGGGTGGTGGATGGG
AGCCGCGTATTCGAGGGACGGGTGCACAGAATGTGGGCTGGGATTGACGA
GGCTTTGAAGCCTTTCTTTGGGGGCCGCAGTCGTTTACCGACTTTCCACG
GCTCGTATGTGAGCTACAGTAATAACACTGGGGGGAGCTATGCGAGGAGC
AGCGGTGCGAGCCTCATAACAGTCCGTCCGGGTCATGAAGGGTACGGCAC
TTTGGCTGCTTTACCGCCATCGGCAGCAGCAACAGCAACAATGGCAGAAT
TAGCTGTTGCTGCAGCAGCAGCAGCAAGAGCAGGAGGAGGGGAAGGAGGA
GGAAGAGGGAAGGTGGGTGTGGCCTTCCCGGATGGTGGCATGCAGAAAGG
TGGGAGTGGTCAAGGCGCTGGCGATGGTCTTATTGGTGGTGGCGCCAACA
CCAGAACCACCAGTAGAAGCACCAGTCGCGGCAAAATCGATCCTTATGCT
TTGCAAGCGGCCTTTATCTCCAAAGGCTTTCGCGTCCCAAAGCGGACCTT
GAGCAAGCTGGCCAGTCAGAAACCTGACGGCTCCTCGGAACGGAAAATGC
GGGTTAGTAAGAGCTCGAATGCGGCCAAGAAATAGATGGCCCTTGCGCGA
GCGGTTGTGGTGTTCGGGCTTTTCGGGTTAGCCATGTATTTTGACCGAAA
GCACATGTTCAAGGAGGCATGGAAGGACCAGCTCGTTTTATTTGGGGCGG
GGCTTGTGAGGGGCGCAATTACGTGGGCGCAG
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Synonyms
Publications