jgi.p|Nanoce1779_2|590900, mRNA_4946 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590900
Unique NamemRNA_4946
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length434
Alignment locationscaffold_12:98791..99224 +

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Properties
Property NameValue
TranscriptId590986
TrackFilteredModels2
ProteinId590900
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:98791..99224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590900gene_4946Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590900mRNA_4946-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4946CDS_4946Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4946 ID=mRNA_4946|Name=jgi.p|Nanoce1779_2|590900|organism=Nannochloropsis oceanica|type=mRNA|length=434bp
ACATCAGCATACACTATCTATACATAGTTTACCACGCCTCTACTAATTAT
GGGTGGTTCGGCTCACGCAGCGTATGCAGTTGGTGCCCTTTTGTGTGCAG
GAGGCCTCGCTGGCTTTGTGCGTGCCCGCAGCAAGCCCTCCCTTGTTGCT
GGAGTGGGGCTGGGGACGATGATGCTTGTGAGTGGTTATATCATCCAGGA
TGGCAACGATCTAAGAGGTCACACCTTCGCCCTCATCACCTCTGGATTGG
TGGTGGCAGGGACGTTGCCTCGTGCTGTCAAGACGCAAAAGATAGTGCCT
GCAGCTGTTGCATTAGTGGGCCTGGTGTCCGCCTTTTACCAGGGCCAAAA
GGTTCGGGAGTGGCGTTGAGGATTGTGAGTGTAGACATTTGACAAGGCAA
AAGCAACAGAAGACACTTCTACATATGTGACAGA
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protein sequence of jgi.p|Nanoce1779_2|590900

>mRNA_4946-protein ID=mRNA_4946-protein|Name=jgi.p|Nanoce1779_2|590900|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MGGSAHAAYAVGALLCAGGLAGFVRARSKPSLVAGVGLGTMMLVSGYIIQ
DGNDLRGHTFALITSGLVVAGTLPRAVKTQKIVPAAVALVGLVSAFYQGQ
KVREWR*
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mRNA from alignment at scaffold_12:98791..99224+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4946 ID=mRNA_4946|Name=jgi.p|Nanoce1779_2|590900|organism=Nannochloropsis oceanica|type=mRNA|length=434bp|location=Sequence derived from alignment at scaffold_12:98791..99224+ (Nannochloropsis oceanica)
ACATCAGCATACACTATCTATACATAGTTTACCACGCCTCTACTAATTAT
GGGTGGTTCGGCTCACGCAGCGTATGCAGTTGGTGCCCTTTTGTGTGCAG
GAGGCCTCGCTGGCTTTGTGCGTGCCCGCAGCAAGCCCTCCCTTGTTGCT
GGAGTGGGGCTGGGGACGATGATGCTTGTGAGTGGTTATATCATCCAGGA
TGGCAACGATCTAAGAGGTCACACCTTCGCCCTCATCACCTCTGGATTGG
TGGTGGCAGGGACGTTGCCTCGTGCTGTCAAGACGCAAAAGATAGTGCCT
GCAGCTGTTGCATTAGTGGGCCTGGTGTCCGCCTTTTACCAGGGCCAAAA
GGTTCGGGAGTGGCGTTGAGGATTGTGAGTGTAGACATTTGACAAGGCAA
AAGCAACAGAAGACACTTCTACATATGTGACAGA
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Coding sequence (CDS) from alignment at scaffold_12:98791..99224+

>mRNA_4946 ID=mRNA_4946|Name=jgi.p|Nanoce1779_2|590900|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_12:98791..99224+ (Nannochloropsis oceanica)
ATGGGTGGTTCGGCTCACGCAGCGTATGCAGTTGGTGCCCTTTTGTGTGC
AGGAGGCCTCGCTGGCTTTGTGCGTGCCCGCAGCAAGCCCTCCCTTGTTG
CTGGAGTGGGGCTGGGGACGATGATGCTTGTGAGTGGTTATATCATCCAG
GATGGCAACGATCTAAGAGGTCACACCTTCGCCCTCATCACCTCTGGATT
GGTGGTGGCAGGGACGTTGCCTCGTGCTGTCAAGACGCAAAAGATAGTGC
CTGCAGCTGTTGCATTAGTGGGCCTGGTGTCCGCCTTTTACCAGGGCCAA
AAGGTTCGGGAGTGGCGTTGA
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Synonyms
Publications