jgi.p|Nanoce1779_2|590894, mRNA_4944 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590894
Unique Name	mRNA_4944
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2988
Alignment location	scaffold_12:91848..94835 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590980
Track	FilteredModels2
ProteinId	590894

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:91848..94835 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590894	gene_4944	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590894	mRNA_4944-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4944	CDS_4944	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:91848..94835+
coding sequence from alignment at scaffold_12:91848..94835+

mRNA sequence

>mRNA_4944 ID=mRNA_4944|Name=jgi.p|Nanoce1779_2|590894|organism=Nannochloropsis oceanica|type=mRNA|length=2988bp
ACAGAGCCTGCGTGGAAGACGTCGCTCAACTTTTTCGGGGGTTGACCACT
GTAGCGCTCCAAAAAAGCAAGGACAACGCAGCTCTGTCCACGTAACAACG
ATTGCACGTCCTTGCCCTCGACTTTCTGGACTTTAGGGACACGTGGAGGT
GTTATCGCAGTGCCCGGCGCAGCTGGCAGGAGTGAGTCCTTCTTCCAATT
CTTTCTTGTGGTCAACGGGTTTTCCGATCTCAATGCGGTAGCATTCCGGC
CAGGCAATGCGGAGATACAGACTGATATGCACACATTCCCGCGCGTTAAC
GCCACTGTACTATCTTCATTCATCATAAGACAGCAGCACCGGCGGAGCCA
GGCCCCGCATAGCGCAAGAGGTAGATGGGGGTCCCAACATGGAGCGTTGG
GGTGATTATCAACGTCATAGGGTCCATCTCAATCAATTTCGGGACCAATT
TAATGAAGTTTGCGCACAATGAGAAGAATCGACAGCGAAAAGAAATCGAA
TTGTCCGAGCAAGACAGTGAAATCACAGGCGGTGACCAGGTATGAATAAC
GAAACGAATAGACAGACCACTGTCTTCCAACACTTGTGCTATATTACTTT
TCATTCTCGTTCACACACTCCAACAACCCACAGCGCATCCCTTCCACTTC
TTTCGGCACTCTTGCATCCAGTAGCAGCAAGGCCGCCAGTTCACACCTGG
TGGGTGCAAGCAGCAACGACTCTACCCCACCAACCAGGCGCCCCTCCTTG
CAATTAATGATCAGCCACGACGACGAGGACACGTCGTCGCGTACCCCCAT
TACCGAGCCTCGAAGACTGACCTTTGCAGAGTATCGAGATCATGTTGTGG
CATCCTTTAGTCGAGGCCTGCGGCTTTACAACCTTAGTCCCCGCTCTGCC
CGAGCGGAGGCCTTGGCCGACAGCAGCAACGGTGAGCCGGACGACGGGAC
CAGCAGCTCTACATCTCGACATTATTGGAGGCCAAGACGACTGTTATCCA
GTTATGTTACTCCAAGTGGAGATGTCAAGGAATTGATGCGAAAGAAGTTC
TGGCACATCGGCGCCTTCATCCTCTTGGTTGGCAGCATCTGTACCTTTGT
CTCCTTCTCCTACGCCCCCCAGTCCATGCTCGCGGCGTTGGGCTCCGTCC
AATTCCTGAGTAATGTTTTTTTTGCCCGGTTCGTCCTCTCAGAGAAAATC
ACGCTTCGAGTTATCCTGGCCACGTGTATCATCATCGCAGGCCAGATCCT
GATTGTGGTCTACTCTCCCCATAAGAGCCGTGAATACGATGCACACTCCC
TCATAGCTCTCTATGACCGGATCTTCCTCATCTACATGGGCGTTTTGGTA
GTGATAGGAGGAGGCTTAATCTTCATTTATCGACATTACAAAAAAAGGAA
GGTGGAGGGAAGGGAGCTGTCCCACACAGACACGGTGTTGCCGGTGACGT
ATGCGATGACCTCAGCCATGATCGGCACCTTCAGTGTGCTGCAGGCCAAG
TGCCTGTCCGAATTGTTGAGGCGGACCTTAAATGGAGACAACCAGCTCAA
GTTCTTTTATACTTGGTTTGTGCTATTGGTATGGTTGTTCTTGACAGTGT
TCTGGTTGCATCGGATGAACACAGCTTTGCGCCTGTTCGATGGTATTTTT
ATCATTCCCGTGCTGCAGGTCTTCTGGACTCTATTTGCCATTATGACAGG
GGGCATTTATTTCCAGGAATTTCAAGAATACAGCTCCAAAATGTTGGCAT
TGTTTGTTTTCGGCGTCTTGATCATCTTTTCAGGCGTTGCCCTCCTTTCC
CCCCGGCAGACGACGGTGGAGGCAGAGGAGTTGTTCGAGGAGATTCTCGA
CGAGGAAGGCGCATCCTCCTGGAGAGGCATGGACACAGAGGAAGAAAGCA
GCCCTTCTTCATCCAATAGCCCTCCTCCCCCGTCAACGGGCGACAAAGTA
AACTCCCTTGACGACCCAGGGCAGATAAATAAGGGGCATGACGGGCATGG
GAAGGGCAGCGGCAGGCAGCAGCAAGCACCACAGGCGCTGGCGGCGCACC
AGGCCAACATCATCCATCCATTGCGTGGTATATCGGCAGCGGCTATGACG
AATGGTGATTGCACCGGAGAGGAGGAATATCCATGGCCATCGCATCTGAT
AGGCATTTCTCGATCCCCCTTTCAAGCACTCGTCGCCGATGGAGACATGG
CTGATGCTGCTGATGCTGCCGCCAGTGATTCTGGTGGGGATGCCGATTAT
AGTAATATGACTCTTTCCTCCAGAGGGGGCGAAAGCCCGTCTAAGCCGCT
ACCACCTCAGATCCAGAGCAAGCCCCCTACAAACACGAAAGTAATTACTG
GATCGGCGGCGTGCAGAGCATCGAGCCTCGACGTACTAGACAAAAATAAT
TCGTGTCTTTTCTCCTTCTGCACCCTGCCCTTTATTGCCAACGACCAAGA
TCTCACCAACTTTTTGGCCCACGTAACCCCTACCCTGCTGTCCGAGGATC
CCACCTCAACCCGTTCAGTCTGCTCTTCTTCGCATCGGACGACGCCCATG
GGTGAATGCGAAAAGGGTGGGCAAGCAAATGTGGTCCCCGACTGTGTTGG
CATCAACTTTTCGTGTGTCGCGTGATTTCCCGGCTGCGATTTCTGCATCT
GTTCCCTCTTTGCCAAGCAGCGGCCGAGGAGCAGTCAGCAATCGCAATAT
CATAGAGAAGATGACAGCCAGTGTCAAGCACTTCAAAAATATCGACTGTG
ACTGAAGCGACTCGGTGGAGATGAGAGGTGTATAGTGACAAAAGGATCGA
TGATACTACCTCATTAGTCCGATCTGGCTCTGCAGGAGGGAAACTGTGTA
GGTTAAATGTTCGGACAAGAGATTTCTTCCGGGCTATTCTGTAGAGACGT
GGCAGAATGTTATCGATCAGTAACATAATAATATTGAGAGCCAGCGAACG
TTGAAAACCAAAGAAATAAATGCACGAAATGTCTTTCA

protein sequence of jgi.p|Nanoce1779_2|590894

>mRNA_4944-protein ID=mRNA_4944-protein|Name=jgi.p|Nanoce1779_2|590894|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MISHDDEDTSSRTPITEPRRLTFAEYRDHVVASFSRGLRLYNLSPRSARA
EALADSSNGEPDDGTSSSTSRHYWRPRRLLSSYVTPSGDVKELMRKKFWH
IGAFILLVGSICTFVSFSYAPQSMLAALGSVQFLSNVFFARFVLSEKITL
RVILATCIIIAGQILIVVYSPHKSREYDAHSLIALYDRIFLIYMGVLVVI
GGGLIFIYRHYKKRKVEGRELSHTDTVLPVTYAMTSAMIGTFSVLQAKCL
SELLRRTLNGDNQLKFFYTWFVLLVWLFLTVFWLHRMNTALRLFDGIFII
PVLQVFWTLFAIMTGGIYFQEFQEYSSKMLALFVFGVLIIFSGVALLSPR
QTTVEAEELFEEILDEEGASSWRGMDTEEESSPSSSNSPPPPSTGDKVNS
LDDPGQINKGHDGHGKGSGRQQQAPQALAAHQANIIHPLRGISAAAMTNG
DCTGEEEYPWPSHLIGISRSPFQALVADGDMADAADAAASDSGGDADYSN
MTLSSRGGESPSKPLPPQIQSKPPTNTKVITGSAACRASSLDVLDKNNSC
LFSFCTLPFIANDQDLTNFLAHVTPTLLSEDPTSTRSVCSSSHRTTPMGE
CEKGGQANVVPDCVGINFSCVA*

mRNA from alignment at scaffold_12:91848..94835+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4944 ID=mRNA_4944|Name=jgi.p|Nanoce1779_2|590894|organism=Nannochloropsis oceanica|type=mRNA|length=2988bp|location=Sequence derived from alignment at scaffold_12:91848..94835+ (Nannochloropsis oceanica)
ACAGAGCCTGCGTGGAAGACGTCGCTCAACTTTTTCGGGGGTTGACCACT
GTAGCGCTCCAAAAAAGCAAGGACAACGCAGCTCTGTCCACGTAACAACG
ATTGCACGTCCTTGCCCTCGACTTTCTGGACTTTAGGGACACGTGGAGGT
GTTATCGCAGTGCCCGGCGCAGCTGGCAGGAGTGAGTCCTTCTTCCAATT
CTTTCTTGTGGTCAACGGGTTTTCCGATCTCAATGCGGTAGCATTCCGGC
CAGGCAATGCGGAGATACAGACTGATATGCACACATTCCCGCGCGTTAAC
GCCACTGTACTATCTTCATTCATCATAAGACAGCAGCACCGGCGGAGCCA
GGCCCCGCATAGCGCAAGAGGTAGATGGGGGTCCCAACATGGAGCGTTGG
GGTGATTATCAACGTCATAGGGTCCATCTCAATCAATTTCGGGACCAATT
TAATGAAGTTTGCGCACAATGAGAAGAATCGACAGCGAAAAGAAATCGAA
TTGTCCGAGCAAGACAGTGAAATCACAGGCGGTGACCAGGTATGAATAAC
GAAACGAATAGACAGACCACTGTCTTCCAACACTTGTGCTATATTACTTT
TCATTCTCGTTCACACACTCCAACAACCCACAGCGCATCCCTTCCACTTC
TTTCGGCACTCTTGCATCCAGTAGCAGCAAGGCCGCCAGTTCACACCTGG
TGGGTGCAAGCAGCAACGACTCTACCCCACCAACCAGGCGCCCCTCCTTG
CAATTAATGATCAGCCACGACGACGAGGACACGTCGTCGCGTACCCCCAT
TACCGAGCCTCGAAGACTGACCTTTGCAGAGTATCGAGATCATGTTGTGG
CATCCTTTAGTCGAGGCCTGCGGCTTTACAACCTTAGTCCCCGCTCTGCC
CGAGCGGAGGCCTTGGCCGACAGCAGCAACGGTGAGCCGGACGACGGGAC
CAGCAGCTCTACATCTCGACATTATTGGAGGCCAAGACGACTGTTATCCA
GTTATGTTACTCCAAGTGGAGATGTCAAGGAATTGATGCGAAAGAAGTTC
TGGCACATCGGCGCCTTCATCCTCTTGGTTGGCAGCATCTGTACCTTTGT
CTCCTTCTCCTACGCCCCCCAGTCCATGCTCGCGGCGTTGGGCTCCGTCC
AATTCCTGAGTAATGTTTTTTTTGCCCGGTTCGTCCTCTCAGAGAAAATC
ACGCTTCGAGTTATCCTGGCCACGTGTATCATCATCGCAGGCCAGATCCT
GATTGTGGTCTACTCTCCCCATAAGAGCCGTGAATACGATGCACACTCCC
TCATAGCTCTCTATGACCGGATCTTCCTCATCTACATGGGCGTTTTGGTA
GTGATAGGAGGAGGCTTAATCTTCATTTATCGACATTACAAAAAAAGGAA
GGTGGAGGGAAGGGAGCTGTCCCACACAGACACGGTGTTGCCGGTGACGT
ATGCGATGACCTCAGCCATGATCGGCACCTTCAGTGTGCTGCAGGCCAAG
TGCCTGTCCGAATTGTTGAGGCGGACCTTAAATGGAGACAACCAGCTCAA
GTTCTTTTATACTTGGTTTGTGCTATTGGTATGGTTGTTCTTGACAGTGT
TCTGGTTGCATCGGATGAACACAGCTTTGCGCCTGTTCGATGGTATTTTT
ATCATTCCCGTGCTGCAGGTCTTCTGGACTCTATTTGCCATTATGACAGG
GGGCATTTATTTCCAGGAATTTCAAGAATACAGCTCCAAAATGTTGGCAT
TGTTTGTTTTCGGCGTCTTGATCATCTTTTCAGGCGTTGCCCTCCTTTCC
CCCCGGCAGACGACGGTGGAGGCAGAGGAGTTGTTCGAGGAGATTCTCGA
CGAGGAAGGCGCATCCTCCTGGAGAGGCATGGACACAGAGGAAGAAAGCA
GCCCTTCTTCATCCAATAGCCCTCCTCCCCCGTCAACGGGCGACAAAGTA
AACTCCCTTGACGACCCAGGGCAGATAAATAAGGGGCATGACGGGCATGG
GAAGGGCAGCGGCAGGCAGCAGCAAGCACCACAGGCGCTGGCGGCGCACC
AGGCCAACATCATCCATCCATTGCGTGGTATATCGGCAGCGGCTATGACG
AATGGTGATTGCACCGGAGAGGAGGAATATCCATGGCCATCGCATCTGAT
AGGCATTTCTCGATCCCCCTTTCAAGCACTCGTCGCCGATGGAGACATGG
CTGATGCTGCTGATGCTGCCGCCAGTGATTCTGGTGGGGATGCCGATTAT
AGTAATATGACTCTTTCCTCCAGAGGGGGCGAAAGCCCGTCTAAGCCGCT
ACCACCTCAGATCCAGAGCAAGCCCCCTACAAACACGAAAGTAATTACTG
GATCGGCGGCGTGCAGAGCATCGAGCCTCGACGTACTAGACAAAAATAAT
TCGTGTCTTTTCTCCTTCTGCACCCTGCCCTTTATTGCCAACGACCAAGA
TCTCACCAACTTTTTGGCCCACGTAACCCCTACCCTGCTGTCCGAGGATC
CCACCTCAACCCGTTCAGTCTGCTCTTCTTCGCATCGGACGACGCCCATG
GGTGAATGCGAAAAGGGTGGGCAAGCAAATGTGGTCCCCGACTGTGTTGG
CATCAACTTTTCGTGTGTCGCGTGATTTCCCGGCTGCGATTTCTGCATCT
GTTCCCTCTTTGCCAAGCAGCGGCCGAGGAGCAGTCAGCAATCGCAATAT
CATAGAGAAGATGACAGCCAGTGTCAAGCACTTCAAAAATATCGACTGTG
ACTGAAGCGACTCGGTGGAGATGAGAGGTGTATAGTGACAAAAGGATCGA
TGATACTACCTCATTAGTCCGATCTGGCTCTGCAGGAGGGAAACTGTGTA
GGTTAAATGTTCGGACAAGAGATTTCTTCCGGGCTATTCTGTAGAGACGT
GGCAGAATGTTATCGATCAGTAACATAATAATATTGAGAGCCAGCGAACG
TTGAAAACCAAAGAAATAAATGCACGAAATGTCTTTCA

Coding sequence (CDS) from alignment at scaffold_12:91848..94835+

>mRNA_4944 ID=mRNA_4944|Name=jgi.p|Nanoce1779_2|590894|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at scaffold_12:91848..94835+ (Nannochloropsis oceanica)
ATGATCAGCCACGACGACGAGGACACGTCGTCGCGTACCCCCATTACCGA
GCCTCGAAGACTGACCTTTGCAGAGTATCGAGATCATGTTGTGGCATCCT
TTAGTCGAGGCCTGCGGCTTTACAACCTTAGTCCCCGCTCTGCCCGAGCG
GAGGCCTTGGCCGACAGCAGCAACGGTGAGCCGGACGACGGGACCAGCAG
CTCTACATCTCGACATTATTGGAGGCCAAGACGACTGTTATCCAGTTATG
TTACTCCAAGTGGAGATGTCAAGGAATTGATGCGAAAGAAGTTCTGGCAC
ATCGGCGCCTTCATCCTCTTGGTTGGCAGCATCTGTACCTTTGTCTCCTT
CTCCTACGCCCCCCAGTCCATGCTCGCGGCGTTGGGCTCCGTCCAATTCC
TGAGTAATGTTTTTTTTGCCCGGTTCGTCCTCTCAGAGAAAATCACGCTT
CGAGTTATCCTGGCCACGTGTATCATCATCGCAGGCCAGATCCTGATTGT
GGTCTACTCTCCCCATAAGAGCCGTGAATACGATGCACACTCCCTCATAG
CTCTCTATGACCGGATCTTCCTCATCTACATGGGCGTTTTGGTAGTGATA
GGAGGAGGCTTAATCTTCATTTATCGACATTACAAAAAAAGGAAGGTGGA
GGGAAGGGAGCTGTCCCACACAGACACGGTGTTGCCGGTGACGTATGCGA
TGACCTCAGCCATGATCGGCACCTTCAGTGTGCTGCAGGCCAAGTGCCTG
TCCGAATTGTTGAGGCGGACCTTAAATGGAGACAACCAGCTCAAGTTCTT
TTATACTTGGTTTGTGCTATTGGTATGGTTGTTCTTGACAGTGTTCTGGT
TGCATCGGATGAACACAGCTTTGCGCCTGTTCGATGGTATTTTTATCATT
CCCGTGCTGCAGGTCTTCTGGACTCTATTTGCCATTATGACAGGGGGCAT
TTATTTCCAGGAATTTCAAGAATACAGCTCCAAAATGTTGGCATTGTTTG
TTTTCGGCGTCTTGATCATCTTTTCAGGCGTTGCCCTCCTTTCCCCCCGG
CAGACGACGGTGGAGGCAGAGGAGTTGTTCGAGGAGATTCTCGACGAGGA
AGGCGCATCCTCCTGGAGAGGCATGGACACAGAGGAAGAAAGCAGCCCTT
CTTCATCCAATAGCCCTCCTCCCCCGTCAACGGGCGACAAAGTAAACTCC
CTTGACGACCCAGGGCAGATAAATAAGGGGCATGACGGGCATGGGAAGGG
CAGCGGCAGGCAGCAGCAAGCACCACAGGCGCTGGCGGCGCACCAGGCCA
ACATCATCCATCCATTGCGTGGTATATCGGCAGCGGCTATGACGAATGGT
GATTGCACCGGAGAGGAGGAATATCCATGGCCATCGCATCTGATAGGCAT
TTCTCGATCCCCCTTTCAAGCACTCGTCGCCGATGGAGACATGGCTGATG
CTGCTGATGCTGCCGCCAGTGATTCTGGTGGGGATGCCGATTATAGTAAT
ATGACTCTTTCCTCCAGAGGGGGCGAAAGCCCGTCTAAGCCGCTACCACC
TCAGATCCAGAGCAAGCCCCCTACAAACACGAAAGTAATTACTGGATCGG
CGGCGTGCAGAGCATCGAGCCTCGACGTACTAGACAAAAATAATTCGTGT
CTTTTCTCCTTCTGCACCCTGCCCTTTATTGCCAACGACCAAGATCTCAC
CAACTTTTTGGCCCACGTAACCCCTACCCTGCTGTCCGAGGATCCCACCT
CAACCCGTTCAGTCTGCTCTTCTTCGCATCGGACGACGCCCATGGGTGAA
TGCGAAAAGGGTGGGCAAGCAAATGTGGTCCCCGACTGTGTTGGCATCAA
CTTTTCGTGTGTCGCGTGA

Synonyms

Publications