jgi.p|Nanoce1779_2|590881, mRNA_4941 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590881
Unique Name	mRNA_4941
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1006
Alignment location	scaffold_12:79851..80856 +

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Properties


Property Name	Value
TranscriptId	590967
Track	FilteredModels2
ProteinId	590881

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:79851..80856 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590881	gene_4941	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590881	mRNA_4941-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4941	CDS_4941	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:79851..80856+
coding sequence from alignment at scaffold_12:79851..80856+

mRNA sequence

>mRNA_4941 ID=mRNA_4941|Name=jgi.p|Nanoce1779_2|590881|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp
CACCACCACTACCACCACCACCACAGACAGATAGATGAGTGTAAGCGCTA
TCATCGTCTTTTATGCAAGGCACTACACTCCCAACGTCACATCCACTACT
ACTAGCACAATTTGGCGCAGCAGTCACAGTCATTGCATCATTTTCCTCCA
TCACCGACGACGCTGGCGCCGAGTGCCATGTAGCTTCACGTGGCGCGCTG
ATAACAACAGAACCACGCTCCTCGGGAGCCTCGGCGAGTACGTCCGACAG
GTCGTCCTCAAACAACTCCAGACGAGTTGACAAAGTCTGCCCATGCGACT
GCTGCTGTTGCTGGTTGGAGGGAAGTTGGGGCATCGAATGGTGAAGACTG
AAAGCAGACAGTTGTTGCTCTCGCTGCTGGAAATGGAGCGGTGGCAGCGG
CCGTTGCGCCCATAGAGATGAAGGGGACCAGGACGACAAGGAATCTTGAG
CGGAGATCTTGCGGAGATAACGCGAACTAGGCAAGGGGGTGACAGTGAAG
GCGAGGAGGCCTGTGTGGGCTTCAAGGTTGTGGCCCCCCATTACCCGGAC
CAGCGAGAGAATACTCTGCCCTGTTTTGCTAATGCAGCGAGCAAGAAATC
GTCGATCCGCTAGCTCAGCATGCCCGTACAGGACCTCACCAATAGCCTTG
TAATACGCCAGCAAATCTTCCCGCGCGATTATTTTACTCCCCCACACGTA
AGGCGCGATCACCCCTTCCTGCCGAAGCCGGTGGCTTAGCTCGTCCGTCG
AAAGAAAGACCTTGCTGAAAGCGCTCGAGCAATGCACCTCAACCTCGCCC
TGTCGGATCCAAACCACGGAAGACATAGGCTCGGGAATGCAGATATCATC
CATACCACGCGCCTGTAGAAGCGGGCCCAGCAGTGATCCCCCCTTCCTCT
GATTCGGTCGGCGCGATTCGTGCTTCTGTTGTTGTTGCTGCTGCTGCCGC
TGCTGCCGCTGCTGCAGCTGCTCCTGAATGCCGGTGGGTGACGCTTTCAG
TAGTGC

protein sequence of jgi.p|Nanoce1779_2|590881

>mRNA_4941-protein ID=mRNA_4941-protein|Name=jgi.p|Nanoce1779_2|590881|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MQGTTLPTSHPLLLAQFGAAVTVIASFSSITDDAGAECHVASRGALITTE
PRSSGASASTSDRSSSNNSRRVDKVCPCDCCCCWLEGSWGIEW*

mRNA from alignment at scaffold_12:79851..80856+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4941 ID=mRNA_4941|Name=jgi.p|Nanoce1779_2|590881|organism=Nannochloropsis oceanica|type=mRNA|length=1006bp|location=Sequence derived from alignment at scaffold_12:79851..80856+ (Nannochloropsis oceanica)
CACCACCACTACCACCACCACCACAGACAGATAGATGAGTGTAAGCGCTA
TCATCGTCTTTTATGCAAGGCACTACACTCCCAACGTCACATCCACTACT
ACTAGCACAATTTGGCGCAGCAGTCACAGTCATTGCATCATTTTCCTCCA
TCACCGACGACGCTGGCGCCGAGTGCCATGTAGCTTCACGTGGCGCGCTG
ATAACAACAGAACCACGCTCCTCGGGAGCCTCGGCGAGTACGTCCGACAG
GTCGTCCTCAAACAACTCCAGACGAGTTGACAAAGTCTGCCCATGCGACT
GCTGCTGTTGCTGGTTGGAGGGAAGTTGGGGCATCGAATGGTGAAGACTG
AAAGCAGACAGTTGTTGCTCTCGCTGCTGGAAATGGAGCGGTGGCAGCGG
CCGTTGCGCCCATAGAGATGAAGGGGACCAGGACGACAAGGAATCTTGAG
CGGAGATCTTGCGGAGATAACGCGAACTAGGCAAGGGGGTGACAGTGAAG
GCGAGGAGGCCTGTGTGGGCTTCAAGGTTGTGGCCCCCCATTACCCGGAC
CAGCGAGAGAATACTCTGCCCTGTTTTGCTAATGCAGCGAGCAAGAAATC
GTCGATCCGCTAGCTCAGCATGCCCGTACAGGACCTCACCAATAGCCTTG
TAATACGCCAGCAAATCTTCCCGCGCGATTATTTTACTCCCCCACACGTA
AGGCGCGATCACCCCTTCCTGCCGAAGCCGGTGGCTTAGCTCGTCCGTCG
AAAGAAAGACCTTGCTGAAAGCGCTCGAGCAATGCACCTCAACCTCGCCC
TGTCGGATCCAAACCACGGAAGACATAGGCTCGGGAATGCAGATATCATC
CATACCACGCGCCTGTAGAAGCGGGCCCAGCAGTGATCCCCCCTTCCTCT
GATTCGGTCGGCGCGATTCGTGCTTCTGTTGTTGTTGCTGCTGCTGCCGC
TGCTGCCGCTGCTGCAGCTGCTCCTGAATGCCGGTGGGTGACGCTTTCAG
TAGTGC

Coding sequence (CDS) from alignment at scaffold_12:79851..80856+

>mRNA_4941 ID=mRNA_4941|Name=jgi.p|Nanoce1779_2|590881|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_12:79851..80856+ (Nannochloropsis oceanica)
ATGCAAGGCACTACACTCCCAACGTCACATCCACTACTACTAGCACAATT
TGGCGCAGCAGTCACAGTCATTGCATCATTTTCCTCCATCACCGACGACG
CTGGCGCCGAGTGCCATGTAGCTTCACGTGGCGCGCTGATAACAACAGAA
CCACGCTCCTCGGGAGCCTCGGCGAGTACGTCCGACAGGTCGTCCTCAAA
CAACTCCAGACGAGTTGACAAAGTCTGCCCATGCGACTGCTGCTGTTGCT
GGTTGGAGGGAAGTTGGGGCATCGAATGGTGA

Synonyms

Publications