jgi.p|Nanoce1779_2|590880, mRNA_4940 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590880
Unique NamemRNA_4940
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length821
Alignment locationscaffold_12:79052..79872 +

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Properties
Property NameValue
TranscriptId590966
TrackFilteredModels2
ProteinId590880
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:79052..79872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590880gene_4940Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590880mRNA_4940-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4940CDS_4940Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4940 ID=mRNA_4940|Name=jgi.p|Nanoce1779_2|590880|organism=Nannochloropsis oceanica|type=mRNA|length=821bp
TGTTGTTGTTGTTGTTGTTGTTGTGGTTGTTGTTGTTGTTGCTGGTGGTG
GTTTTGCTGCTGCTGGCAATTGTGGTGGTACATTTGCTGCAAATGCTGCA
AGTGGAAATGTAGCTGGCGCTGCTGCTGCAGCTGCTCTTCTTGGTAGAGC
TGGCCACCAGAAGAAGTTGGGGAAGGAAAAGGAGGAGAAGCAACCGGCAT
AAGAGGGTCCACGGCAATCGTCGCCAGTGGCCGGGAAGGAAACACAGTCG
CAACAGTCGTGCCAGATGCCTTCTCCTCAGGTTCCACCATAATCTCCGTT
TGCATTCCCAAGGACGACGGCGACATCATATGCGCCCTCTGTCCTTGCCC
TCCCTGCCTCGGGCTTTGATCCATCCCTTCACTTGGCGGCCCAAACATCT
CCTCCCCTGCTTTCCCGAATAACTCTTCAAGAATACCCGCATCCAAATCC
CACACACTCTCGTCTATCCCTTCGTTGACTGCCGCAAGTGATACAGCCGA
TGTCACTGATGTTGCCGTCGCCTCCATCGTCGTCACCACCGACGATTCTG
CAGCTGGTGCTGGTGCTGCTGGTACTGGTCCTGTCGCTTCCCCTCCTCCT
GTCACCGCTCGATCTTCTCGTCCTTCTTTTAACTTGCTTTTCTCATGTCC
GGAGGGGGGAGGTTGTAGTGATGGGCGTTGCTGTGGATGGGAAGATACAG
GCACACCAAGCGGTTGCTCTTCAAAGATCGTGGAAAGGGGAGGGAGCAAA
GAAGTACCTGCCAAGGGAGTATACCTAGATCTGACATCACCACCACCACC
ACCACCACTACCACCACCACC
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protein sequence of jgi.p|Nanoce1779_2|590880

>mRNA_4940-protein ID=mRNA_4940-protein|Name=jgi.p|Nanoce1779_2|590880|organism=Nannochloropsis oceanica|type=polypeptide|length=93bp
MSLMLPSPPSSSPPTILQLVLVLLVLVLSLPLLLSPLDLLVLLLTCFSHV
RRGEVVVMGVAVDGKIQAHQAVALQRSWKGEGAKKYLPREYT*
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mRNA from alignment at scaffold_12:79052..79872+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4940 ID=mRNA_4940|Name=jgi.p|Nanoce1779_2|590880|organism=Nannochloropsis oceanica|type=mRNA|length=821bp|location=Sequence derived from alignment at scaffold_12:79052..79872+ (Nannochloropsis oceanica)
TGTTGTTGTTGTTGTTGTTGTTGTGGTTGTTGTTGTTGTTGCTGGTGGTG
GTTTTGCTGCTGCTGGCAATTGTGGTGGTACATTTGCTGCAAATGCTGCA
AGTGGAAATGTAGCTGGCGCTGCTGCTGCAGCTGCTCTTCTTGGTAGAGC
TGGCCACCAGAAGAAGTTGGGGAAGGAAAAGGAGGAGAAGCAACCGGCAT
AAGAGGGTCCACGGCAATCGTCGCCAGTGGCCGGGAAGGAAACACAGTCG
CAACAGTCGTGCCAGATGCCTTCTCCTCAGGTTCCACCATAATCTCCGTT
TGCATTCCCAAGGACGACGGCGACATCATATGCGCCCTCTGTCCTTGCCC
TCCCTGCCTCGGGCTTTGATCCATCCCTTCACTTGGCGGCCCAAACATCT
CCTCCCCTGCTTTCCCGAATAACTCTTCAAGAATACCCGCATCCAAATCC
CACACACTCTCGTCTATCCCTTCGTTGACTGCCGCAAGTGATACAGCCGA
TGTCACTGATGTTGCCGTCGCCTCCATCGTCGTCACCACCGACGATTCTG
CAGCTGGTGCTGGTGCTGCTGGTACTGGTCCTGTCGCTTCCCCTCCTCCT
GTCACCGCTCGATCTTCTCGTCCTTCTTTTAACTTGCTTTTCTCATGTCC
GGAGGGGGGAGGTTGTAGTGATGGGCGTTGCTGTGGATGGGAAGATACAG
GCACACCAAGCGGTTGCTCTTCAAAGATCGTGGAAAGGGGAGGGAGCAAA
GAAGTACCTGCCAAGGGAGTATACCTAGATCTGACATCACCACCACCACC
ACCACCACTACCACCACCACC
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Coding sequence (CDS) from alignment at scaffold_12:79052..79872+

>mRNA_4940 ID=mRNA_4940|Name=jgi.p|Nanoce1779_2|590880|organism=Nannochloropsis oceanica|type=CDS|length=279bp|location=Sequence derived from alignment at scaffold_12:79052..79872+ (Nannochloropsis oceanica)
ATGTCACTGATGTTGCCGTCGCCTCCATCGTCGTCACCACCGACGATTCT
GCAGCTGGTGCTGGTGCTGCTGGTACTGGTCCTGTCGCTTCCCCTCCTCC
TGTCACCGCTCGATCTTCTCGTCCTTCTTTTAACTTGCTTTTCTCATGTC
CGGAGGGGGGAGGTTGTAGTGATGGGCGTTGCTGTGGATGGGAAGATACA
GGCACACCAAGCGGTTGCTCTTCAAAGATCGTGGAAAGGGGAGGGAGCAA
AGAAGTACCTGCCAAGGGAGTATACCTAG
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Synonyms
Publications