jgi.p|Nanoce1779_2|577475, mRNA_494 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577475
Unique NamemRNA_494
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1089
Alignment locationscaffold_3:1195299..1196387 -

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Properties
Property NameValue
TranscriptId577561
TrackFilteredModels2
ProteinId577475
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1195299..1196387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577475gene_494Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577475mRNA_494-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_494CDS_494Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_494 ID=mRNA_494|Name=jgi.p|Nanoce1779_2|577475|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp
GGGGGAGGGTGTGCCTGCTCGACGAGTAACAGAGTGGGGGCAGGAAGGGA
TGAAAAATCGGGTAAATGTGCGATTTACGGTGGAGATTAAGAAGTTGAAA
AGATATATCGATGCGCAACAAAGAGAGACGTGTGGAGTGGGGATCACTGT
CTTGCATGTCGCAATGCGAGCCTTGGGGCTGGCGCTGCGAGAGGTGCCTG
CATTGAATGGTCATCGGGTGTTTGGGGAATTCAAGCCTTCACGCACGACT
GATGTGTCTTGTGAGCTAAGGTTGAGAGATGGCCGTTTTGCTCTGTTAAA
GGTGGGGGAGGTGGATGTGAAATCCCTTGCAGATATCTCGAGGACGCTGT
CGTTGAAATCACAGGCGTTGAGCCATGGTCGTGATGTGTTTTATAACCGG
CGTTTGCTCATCTCACGGTGGTGTCCCTCATTCCTCCTTCCTTCTCTTGA
AGCTTGTTTTACTGTCTTGGGGGCAGGGTTAGGATTGAGTCTGCCGTGGT
TGGGCGTACGGGCCTTCCCACAGGGAGGATGTGTGGTTCTCACCTCTCCT
GCTGTTACCGCTAGTAGGGGCTTCGCTTGCGAGGCTGATTTTGAAGTAAC
TCCTGCAGCGACGCCGAGCGCCGCGTTCCTCGCTCCTCTGGTTTTGACCA
TCGGAGCGATCAGTGCTGTTCCCAAGGCAGTGGGCGGGCCAAGGGGAGGG
CAGCAGCGGCAGCAGCAGGAAAGGGAGGTGATTTTGTCGCCGGTGCTGAA
TGTGTCGATTCAGGCGCAGCTGCAGGGAGGGGCGTCGTCGTTGCAGCATG
TACGGAGACTGACAGAGCTGGTTCACAAATATATGAATGACCCGAGGTCA
TGCGAGGAGGACGCACTCAAGTCTGCTACGGCTGCTGTCACTGCGCCAGC
AGCCGTATCTGTCTGACACGGGGCAAGGGCAAAAGGAGGAGGAGAGGGAG
GAGAAGGAGAAGGTAGAGGGAAGCAAATGTAATAGCAGTATTGTATGTTT
TTTTTTTTGCATAATTAGATAAGGGGGATGGAAGAGACAGGAGATAAGAC
CAAATGTTAGGAAGAAAAGCAATTTCAAATGGTTATGCA
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protein sequence of jgi.p|Nanoce1779_2|577475

>mRNA_494-protein ID=mRNA_494-protein|Name=jgi.p|Nanoce1779_2|577475|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MKNRVNVRFTVEIKKLKRYIDAQQRETCGVGITVLHVAMRALGLALREVP
ALNGHRVFGEFKPSRTTDVSCELRLRDGRFALLKVGEVDVKSLADISRTL
SLKSQALSHGRDVFYNRRLLISRWCPSFLLPSLEACFTVLGAGLGLSLPW
LGVRAFPQGGCVVLTSPAVTASRGFACEADFEVTPAATPSAAFLAPLVLT
IGAISAVPKAVGGPRGGQQRQQQEREVILSPVLNVSIQAQLQGGASSLQH
VRRLTELVHKYMNDPRSCEEDALKSATAAVTAPAAVSV*
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mRNA from alignment at scaffold_3:1195299..1196387-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_494 ID=mRNA_494|Name=jgi.p|Nanoce1779_2|577475|organism=Nannochloropsis oceanica|type=mRNA|length=1089bp|location=Sequence derived from alignment at scaffold_3:1195299..1196387- (Nannochloropsis oceanica)
GGGGGAGGGTGTGCCTGCTCGACGAGTAACAGAGTGGGGGCAGGAAGGGA TGAAAAATCGGGTAAATGTGCGATTTACGGTGGAGATTAAGAAGTTGAAA AGATATATCGATGCGCAACAAAGAGAGACGTGTGGAGTGGGGATCACTGT CTTGCATGTCGCAATGCGAGCCTTGGGGCTGGCGCTGCGAGAGGTGCCTG CATTGAATGGTCATCGGGTGTTTGGGGAATTCAAGCCTTCACGCACGACT GATGTGTCTTGTGAGCTAAGGTTGAGAGATGGCCGTTTTGCTCTGTTAAA GGTGGGGGAGGTGGATGTGAAATCCCTTGCAGATATCTCGAGGACGCTGT CGTTGAAATCACAGGCGTTGAGCCATGGTCGTGATGTGTTTTATAACCGG CGTTTGCTCATCTCACGGTGGTGTCCCTCATTCCTCCTTCCTTCTCTTGA AGCTTGTTTTACTGTCTTGGGGGCAGGGTTAGGATTGAGTCTGCCGTGGT TGGGCGTACGGGCCTTCCCACAGGGAGGATGTGTGGTTCTCACCTCTCCT GCTGTTACCGCTAGTAGGGGCTTCGCTTGCGAGGCTGATTTTGAAGTAAC TCCTGCAGCGACGCCGAGCGCCGCGTTCCTCGCTCCTCTGGTTTTGACCA TCGGAGCGATCAGTGCTGTTCCCAAGGCAGTGGGCGGGCCAAGGGGAGGG CAGCAGCGGCAGCAGCAGGAAAGGGAGGTGATTTTGTCGCCGGTGCTGAA TGTGTCGATTCAGGCGCAGCTGCAGGGAGGGGCGTCGTCGTTGCAGCATG TACGGAGACTGACAGAGCTGGTTCACAAATATATGAATGACCCGAGGTCA TGCGAGGAGGACGCACTCAAGTCTGCTACGGCTGCTGTCACTGCGCCAGC AGCCGTATCTGTCTGACACGGGGCAAGGGCAAAAGGAGGAGGAGAGGGAG GAGAAGGAGAAGGTAGAGGGAAGCAAATGTAATAGCAGTATTGTATGTTT TTTTTTTTGCATAATTAGATAAGGGGGATGGAAGAGACAGGAGATAAGAC CAAATGTTAGGAAGAAAAGCAATTTCAAATGGTTATGCA
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Coding sequence (CDS) from alignment at scaffold_3:1195299..1196387-

>mRNA_494 ID=mRNA_494|Name=jgi.p|Nanoce1779_2|577475|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at scaffold_3:1195299..1196387- (Nannochloropsis oceanica)
ATGAAAAATCGGGTAAATGTGCGATTTACGGTGGAGATTAAGAAGTTGAA
AAGATATATCGATGCGCAACAAAGAGAGACGTGTGGAGTGGGGATCACTG
TCTTGCATGTCGCAATGCGAGCCTTGGGGCTGGCGCTGCGAGAGGTGCCT
GCATTGAATGGTCATCGGGTGTTTGGGGAATTCAAGCCTTCACGCACGAC
TGATGTGTCTTGTGAGCTAAGGTTGAGAGATGGCCGTTTTGCTCTGTTAA
AGGTGGGGGAGGTGGATGTGAAATCCCTTGCAGATATCTCGAGGACGCTG
TCGTTGAAATCACAGGCGTTGAGCCATGGTCGTGATGTGTTTTATAACCG
GCGTTTGCTCATCTCACGGTGGTGTCCCTCATTCCTCCTTCCTTCTCTTG
AAGCTTGTTTTACTGTCTTGGGGGCAGGGTTAGGATTGAGTCTGCCGTGG
TTGGGCGTACGGGCCTTCCCACAGGGAGGATGTGTGGTTCTCACCTCTCC
TGCTGTTACCGCTAGTAGGGGCTTCGCTTGCGAGGCTGATTTTGAAGTAA
CTCCTGCAGCGACGCCGAGCGCCGCGTTCCTCGCTCCTCTGGTTTTGACC
ATCGGAGCGATCAGTGCTGTTCCCAAGGCAGTGGGCGGGCCAAGGGGAGG
GCAGCAGCGGCAGCAGCAGGAAAGGGAGGTGATTTTGTCGCCGGTGCTGA
ATGTGTCGATTCAGGCGCAGCTGCAGGGAGGGGCGTCGTCGTTGCAGCAT
GTACGGAGACTGACAGAGCTGGTTCACAAATATATGAATGACCCGAGGTC
ATGCGAGGAGGACGCACTCAAGTCTGCTACGGCTGCTGTCACTGCGCCAG
CAGCCGTATCTGTCTGA
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Synonyms
Publications