jgi.p|Nanoce1779_2|590877, mRNA_4939 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590877
Unique NamemRNA_4939
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length821
Alignment locationscaffold_12:76715..78024 +

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Properties
Property NameValue
TranscriptId590963
TrackFilteredModels2
ProteinId590877
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:76715..78024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590877gene_4939Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590877mRNA_4939-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4939CDS_4939Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4939 ID=mRNA_4939|Name=jgi.p|Nanoce1779_2|590877|organism=Nannochloropsis oceanica|type=mRNA|length=821bp
ACAGGGTTTGACTTGACACACGTGGCACCAGGCACGAACAGCATGGCGAA
CGCACCGTCATGGCTCGATGTACGTACAAAAGGAACACGTTATCGACGAT
GTAATCGTCATCATCCTCCCTCCCTTCCTTTCCCTACACCGAAACCCACA
GCAAGACCAACAACAAGGGGTCGTCGGACCATCTCCACCTCCAGGGAGCT
CCTCACCCACACCCAGCATTCAAGAAAGAGTTGAAAACTATCTACCGGCC
TGTGCTAAATACGTCATTCCCTTGTCAAGGGTTATCAATATGGGCCTGGC
CTGCTTGATGGCCTTTTCGGCCGTCAATGGCATTTTAAAAATCGCCCAGT
TCAGGCTCGACACATCCTTTGTGGCCTTATACATGTTCATATTTGCCTCT
ATCCTCTTCTTCTTCGAGCTGTGCCAGTTCAAATACGTCGCCTGGATCGA
CAACGTCTTCCGGAGGAACTTTGGCTTCATGTATGGGTCCAGAGGCAAGG
CTCTGTACATCATCTTCATTGCCTTTCTCAACTTCGGCCTAGTCAGCACG
GGTGTCCTCCAATTTGCGACTGGCATCGTGCTGGCTGTCGATGGGTGCCT
TATGTTTTTTGCTACCTTTAGATACCCGTCGCTCTTTGCAGGAAATACAC
CAGCACAGCCGTCGGCAAGCTCGTCGCACCCAGCGGCGGCAGCCTCGAAG
GGACCAGGGCAGGTGTAGAGAGGCCGGGAAGTGGGAGAGAGGAAAGGGAG
GAAGGGAGGGCATTGTTGTTGGAATGTAAATTTAAAGAACAGAAAAATTA
AGAAAGAAGGGCATGAGGCAT
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protein sequence of jgi.p|Nanoce1779_2|590877

>mRNA_4939-protein ID=mRNA_4939-protein|Name=jgi.p|Nanoce1779_2|590877|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MYVQKEHVIDDVIVIILPPFLSLHRNPQQDQQQGVVGPSPPPGSSSPTPS
IQERVENYLPACAKYVIPLSRVINMGLACLMAFSAVNGILKIAQFRLDTS
FVALYMFIFASILFFFELCQFKYVAWIDNVFRRNFGFMYGSRGKALYIIF
IAFLNFGLVSTGVLQFATGIVLAVDGCLMFFATFRYPSLFAGNTPAQPSA
SSSHPAAAASKGPGQV*
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mRNA from alignment at scaffold_12:76715..78024+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4939 ID=mRNA_4939|Name=jgi.p|Nanoce1779_2|590877|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp|location=Sequence derived from alignment at scaffold_12:76715..78024+ (Nannochloropsis oceanica)
ACAGGGTTTGACTTGACACACGTGGCACCAGGCACGAACAGCATGGCGAA
CGCACCGTCATGGCTCGATGTACGTACAAAAGGAACACGTTATCGACGAT
GTAATCGTCATCATCCTCCCTCCCTTCCTTTCCCTACACCGAAACCCACA
GCAAGACCAACAACAAGGGGTCGTCGGACCATCTCCACCTCCAGGGAGCT
CCTCACCCACACCCAGCATTCAAGAAAGAGTTGAAAACTATCTGTAAGTG
AGTCGCTTCTCCTCCTCTACAGACGGGGGGGGGAAAGAGAAAGAGGAGCG
AAAGGAGACAGAAACTGGCTTCAGAGTTTTGACGAGGAGAAAAAGGGGGC
AGTGAGCATCAAATTTCTGGAAAAGGGTCCTCGAAGAACGATGGATAGCT
GAGATATCACCGACGCCGCTCAACACCCCTTCCCTTCCCGTCGTCTCCCT
CCAACCCCAGACCGGCCTGTGCTAAATACGTCATTCCCTTGTCAAGGGTT
ATCAATATGGGCCTGGCCTGCTTGATGGCCTTTTCGGCCGTCAATGGCAT
TTTAAAAATCGCCCAGTTCAGGCTCGACACATCCTTTGTGGCCTTATACA
TGTTGTGAGTAGGACAGGAAAAGGAGGTGGAGGAAGGGGTGTGTGGGAGA
AGGAAGGACGTCTAGTCTGCATAACCTGATCTGCTTCTCGACCTCTTCGT
GTCCTTGCATAGGCCCTGATGATTCTTTTGTTTCTTTTCTTCTCACACAG
CATATTTGCCTCTATCCTCTTCTTCTTCGAGCTGTGCCAGTTCAAATACG
TCGCCTGGATCGACAACGTCTTCCGGAGGAACTTTGGCTTCATGTATGGG
TCCAGAGGCAAGGCTCTGTACATCATCTTGTGAGTAAAGATCGAGGATGG
CGTGATTGAGCGGGTAGAAAAATTAAAAGTAATGGAGGTCCCGGTCACTA
ACCTCACCTGTTCTTTCCCTTTCTTTCTTCCTTCCTTCCCCTCGTCCTAC
AACAGCATTGCCTTTCTCAACTTCGGCCTAGTCAGCACGGGTGTCCTCCA
ATTTGCGACTGGCATCGTGCTGGCTGTCGATGGGTGCCTTATGTTTTTTG
CTACCTTTAGATACCCGTCGCTCTTTGCAGGAAATACACCAGCACAGCCG
TCGGCAAGCTCGTCGCACCCAGCGGCGGCAGCCTCGAAGGGACCAGGGCA
GGTGTAGAGAGGCCGGGAAGTGGGAGAGAGGAAAGGGAGGAAGGGAGGGC
ATTGTTGTTGGAATGTAAATTTAAAGAACAGAAAAATTAAGAAAGAAGGG
CATGAGGCAT
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Coding sequence (CDS) from alignment at scaffold_12:76715..78024+

>mRNA_4939 ID=mRNA_4939|Name=jgi.p|Nanoce1779_2|590877|organism=Nannochloropsis oceanica|type=CDS|length=2604bp|location=Sequence derived from alignment at scaffold_12:76715..78024+ (Nannochloropsis oceanica)
ATGTACGTACAAAAGGAACACGTTATCGACGATGTAATCGTCATCATCCT
CCCTCCCTTCCTTTCCCTACACCGAAACCCACAGCAAGACCAACAACAAG
GGGTCGTCGGACCATCTCCACCTCCAGGGAGCTCCTCACCCACACCCAGC
ATTCAAGAAAGAGTTGAAAACTATCTACCGGCCTGTGCTAAATACGTCAT
TCCCTTGTCAAGGGTTATCAATATGGGCCTGGCCTGCTTGATGGCCTTTT
CGGCCGTCAATGGCATTTTAAAAATCGCCCAGTTCAGGCTCGACACATCC
TTTGTGGCCTTATACATGTTCATATTTGCCTCTATCCTCTTCTTCTTCGA
GCTGTGCCAGTTCAAATACGTCGCCTGGATCGACAACGTCTTCCGGAGGA
ACTTTGGCTTCATGTATGGGTCCAGAGGCAAGGCTCTGTACATCATCTTC
ATTGCCTTTCTCAACTTCGGCCTAGTCAGCACGGGTGTCCTCCAATTTGC
GACTGGCATCGTGCTGGCTGTCGATGGGTGCCTTATGTTTTTTGCTACCT
TTAGATACCCGTCGCTCTTTGCAGGAAATACACCAGCACAGCCGTCGGCA
AGCTCGTCGCACCCAGCGGCGGCAGCCTCGAAGGGACCAGGGCAGGTGTA
GATGTACGTACAAAAGGAACACGTTATCGACGATGTAATCGTCATCATCC
TCCCTCCCTTCCTTTCCCTACACCGAAACCCACAGCAAGACCAACAACAA
GGGGTCGTCGGACCATCTCCACCTCCAGGGAGCTCCTCACCCACACCCAG
CATTCAAGAAAGAGTTGAAAACTATCTACCGGCCTGTGCTAAATACGTCA
TTCCCTTGTCAAGGGTTATCAATATGGGCCTGGCCTGCTTGATGGCCTTT
TCGGCCGTCAATGGCATTTTAAAAATCGCCCAGTTCAGGCTCGACACATC
CTTTGTGGCCTTATACATGTTCATATTTGCCTCTATCCTCTTCTTCTTCG
AGCTGTGCCAGTTCAAATACGTCGCCTGGATCGACAACGTCTTCCGGAGG
AACTTTGGCTTCATGTATGGGTCCAGAGGCAAGGCTCTGTACATCATCTT
CATTGCCTTTCTCAACTTCGGCCTAGTCAGCACGGGTGTCCTCCAATTTG
CGACTGGCATCGTGCTGGCTGTCGATGGGTGCCTTATGTTTTTTGCTACC
TTTAGATACCCGTCGCTCTTTGCAGGAAATACACCAGCACAGCCGTCGGC
AAGCTCGTCGCACCCAGCGGCGGCAGCCTCGAAGGGACCAGGGCAGGTGT
AGATGTACGTACAAAAGGAACACGTTATCGACGATGTAATCGTCATCATC
CTCCCTCCCTTCCTTTCCCTACACCGAAACCCACAGCAAGACCAACAACA
AGGGGTCGTCGGACCATCTCCACCTCCAGGGAGCTCCTCACCCACACCCA
GCATTCAAGAAAGAGTTGAAAACTATCTACCGGCCTGTGCTAAATACGTC
ATTCCCTTGTCAAGGGTTATCAATATGGGCCTGGCCTGCTTGATGGCCTT
TTCGGCCGTCAATGGCATTTTAAAAATCGCCCAGTTCAGGCTCGACACAT
CCTTTGTGGCCTTATACATGTTCATATTTGCCTCTATCCTCTTCTTCTTC
GAGCTGTGCCAGTTCAAATACGTCGCCTGGATCGACAACGTCTTCCGGAG
GAACTTTGGCTTCATGTATGGGTCCAGAGGCAAGGCTCTGTACATCATCT
TCATTGCCTTTCTCAACTTCGGCCTAGTCAGCACGGGTGTCCTCCAATTT
GCGACTGGCATCGTGCTGGCTGTCGATGGGTGCCTTATGTTTTTTGCTAC
CTTTAGATACCCGTCGCTCTTTGCAGGAAATACACCAGCACAGCCGTCGG
CAAGCTCGTCGCACCCAGCGGCGGCAGCCTCGAAGGGACCAGGGCAGGTG
TAGATGTACGTACAAAAGGAACACGTTATCGACGATGTAATCGTCATCAT
CCTCCCTCCCTTCCTTTCCCTACACCGAAACCCACAGCAAGACCAACAAC
AAGGGGTCGTCGGACCATCTCCACCTCCAGGGAGCTCCTCACCCACACCC
AGCATTCAAGAAAGAGTTGAAAACTATCTACCGGCCTGTGCTAAATACGT
CATTCCCTTGTCAAGGGTTATCAATATGGGCCTGGCCTGCTTGATGGCCT
TTTCGGCCGTCAATGGCATTTTAAAAATCGCCCAGTTCAGGCTCGACACA
TCCTTTGTGGCCTTATACATGTTCATATTTGCCTCTATCCTCTTCTTCTT
CGAGCTGTGCCAGTTCAAATACGTCGCCTGGATCGACAACGTCTTCCGGA
GGAACTTTGGCTTCATGTATGGGTCCAGAGGCAAGGCTCTGTACATCATC
TTCATTGCCTTTCTCAACTTCGGCCTAGTCAGCACGGGTGTCCTCCAATT
TGCGACTGGCATCGTGCTGGCTGTCGATGGGTGCCTTATGTTTTTTGCTA
CCTTTAGATACCCGTCGCTCTTTGCAGGAAATACACCAGCACAGCCGTCG
GCAAGCTCGTCGCACCCAGCGGCGGCAGCCTCGAAGGGACCAGGGCAGGT
GTAG
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Synonyms
Publications