Properties
| Property Name | Value |
|---|
| TranscriptId | 590961 |
| Track | FilteredModels2 |
| ProteinId | 590875 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:75014..76513 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4938 ID=mRNA_4938|Name=jgi.p|Nanoce1779_2|590875|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp
ATATGTATCAAGATTTTTTTTTAGTTTGTTTTGGATGAGTGATAGTGGTG
TTTGACCGCCTCGCTTCTCCTGCTCGACCACCGAGACAGTCCATGTTCGA
GCCCTATTGCTGGCGTAGCCAACGAAAATAAATAGCAAAGATGCCCTACC
CATTTGTGTCAAGCGTCAAGCGTCAGAGCCTCTTTGCCAATATGCTTGAT
GTCAAATCACTTATCTTGCCCTAAGCCCACAAAAAACACAAGAACACAGT
TACCTAGTACAAGCCTGCCTGGGCTTGCTCCCTATTCCTTCAACCAGTAT
GGCCCCGGATCTCAAGGGCAAACGCTGCCTCGTGACCGGCGGGACTGAAC
CCGCATCCGTTGGCTACGTCTCAGCTTTGGCTTGTCTGGCTGCGGGCGCC
GTGCATGTCGTCGTGGTTGGCCGGGACCTTGCCAAGATGGGTAGCGCCGT
CCCCGCAGGCTTGTCGGGCTTGGAAGGCAATCTGAAAAAGCCCGAGACGA
TGGCAGAGCTTGTCGGAGCCGCCGTCGATAAGCTTGGTGGGGGGCTAGAT
GTATTGATTGTCAGTGGGGGAAATGGCTACTCAGAGTACTTGGGACTGGA
TCCGACGGATGCCGCGAGCTATCATCTCATGTACGACATGGCCGTGCTCT
CCCCAATGTTTCTTGTCGCGGCCGCCGCCCCCTTTCTCAGCCAGGCCCCC
AACGGTGGCGGGTCTGTAGTGATGGTCAGCTCCCTTGCCGCGCACTGTCC
ATGGCCTGACACTGCTCCTTTTAATCTGGCCAAGGCGGCACAGAACGCAT
TGGTTGAGACTCTGGCGTTCAAGCATCGACAAGACGGTTTCCGCGTGAAT
GGGGTGCTGCCCGGATGCATCCACACCAAAGCATTGGACGTAATGGCCGT
GAAAAAAGGCCGCGATCTTGGTGAATATGCCTCGTTGCGCGCTAATGCGA
TCCCGATGGGTCGAAATGGCACGCCGGAAGAAGTGGCACAAGCCGTGTTG
TTTCTTGCCTCGCCCGCCTCCTCCTACATGACGGGGACGTTGTTACCGGT
GGACGGAGGATTAGGACTGTCTTCCTGGTTTAACACGCCAAGACTGTTGT
CAGAGTACATGGGGGGGACCAAGGTGGAGAGCACCAAAGCGTCCAAGGCG
TAGCTTGTGTATGTGTGAGTAGGTTTATGGAGGGAGGAAAAGGGGAGTCA
TGAGCTGGGAGTGAGGTCTGCTAAGAGTTGATAGAGGACGAAAAGGTGTA
AATCGGGTCATGATGGCATTATCCAATGAAAGGGGATGAAGGCAATCCAT
CAGGTGCCAGCGTGGAAAAGCGGAGAGGAAGGTTGATATGGGATGATGAA
GGGATTCAGAGTGGGGGGAAAAGGGGAAATGGAAGGAGGAAGATTTAGGC
AATTATCTTAACCAGGAGGATGCAATGGAGGGCGGAACACTGAAAAAGTG
GTGCAGGTTAAAAGAAATTTCGAAAGCAAGACTCGCATTAGATTGGGCAA back to topprotein sequence of jgi.p|Nanoce1779_2|590875 >mRNA_4938-protein ID=mRNA_4938-protein|Name=jgi.p|Nanoce1779_2|590875|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MAPDLKGKRCLVTGGTEPASVGYVSALACLAAGAVHVVVVGRDLAKMGSA
VPAGLSGLEGNLKKPETMAELVGAAVDKLGGGLDVLIVSGGNGYSEYLGL
DPTDAASYHLMYDMAVLSPMFLVAAAAPFLSQAPNGGGSVVMVSSLAAHC
PWPDTAPFNLAKAAQNALVETLAFKHRQDGFRVNGVLPGCIHTKALDVMA
VKKGRDLGEYASLRANAIPMGRNGTPEEVAQAVLFLASPASSYMTGTLLP
VDGGLGLSSWFNTPRLLSEYMGGTKVESTKASKA* back to topmRNA from alignment at scaffold_12:75014..76513- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4938 ID=mRNA_4938|Name=jgi.p|Nanoce1779_2|590875|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp|location=Sequence derived from alignment at scaffold_12:75014..76513- (Nannochloropsis oceanica)
ATATGTATCAAGATTTTTTTTTAGTTTGTTTTGGATGAGTGATAGTGGTG
TTTGACCGCCTCGCTTCTCCTGCTCGACCACCGAGACAGTCCATGTTCGA
GCCCTATTGCTGGCGTAGCCAACGAAAATAAATAGCAAAGATGCCCTACC
CATTTGTGTCAAGCGTCAAGCGTCAGAGCCTCTTTGCCAATATGCTTGAT
GTCAAATCACTTATCTTGCCCTAAGCCCACAAAAAACACAAGAACACAGT
TACCTAGTACAAGCCTGCCTGGGCTTGCTCCCTATTCCTTCAACCAGTAT
GGCCCCGGATCTCAAGGGCAAACGCTGCCTCGTGACCGGCGGGACTGAAC
CCGCATCCGTTGGCTACGTCTCAGCTTTGGCTTGTCTGGCTGCGGGCGCC
GTGCATGTCGTCGTGGTTGGCCGGGACCTTGCCAAGATGGGTAGCGCCGT
CCCCGCAGGCTTGTCGGGCTTGGAAGGCAATCTGAAAAAGCCCGAGACGA
TGGCAGAGCTTGTCGGAGCCGCCGTCGATAAGCTTGGTGGGGGGCTAGAT
GTATTGATTGTCAGTGGGGGAAATGGCTACTCAGAGTACTTGGGACTGGA
TCCGACGGATGCCGCGAGCTATCATCTCATGTACGACATGGCCGTGCTCT
CCCCAATGTTTCTTGTCGCGGCCGCCGCCCCCTTTCTCAGCCAGGCCCCC
AACGGTGGCGGGTCTGTAGTGATGGTCAGCTCCCTTGCCGCGCACTGTCC
ATGGCCTGACACTGCTCCTTTTAATCTGGCCAAGGCGGCACAGAACGCAT
TGGTTGAGACTCTGGCGTTCAAGCATCGACAAGACGGTTTCCGCGTGAAT
GGGGTGCTGCCCGGATGCATCCACACCAAAGCATTGGACGTAATGGCCGT
GAAAAAAGGCCGCGATCTTGGTGAATATGCCTCGTTGCGCGCTAATGCGA
TCCCGATGGGTCGAAATGGCACGCCGGAAGAAGTGGCACAAGCCGTGTTG
TTTCTTGCCTCGCCCGCCTCCTCCTACATGACGGGGACGTTGTTACCGGT
GGACGGAGGATTAGGACTGTCTTCCTGGTTTAACACGCCAAGACTGTTGT
CAGAGTACATGGGGGGGACCAAGGTGGAGAGCACCAAAGCGTCCAAGGCG
TAGCTTGTGTATGTGTGAGTAGGTTTATGGAGGGAGGAAAAGGGGAGTCA
TGAGCTGGGAGTGAGGTCTGCTAAGAGTTGATAGAGGACGAAAAGGTGTA
AATCGGGTCATGATGGCATTATCCAATGAAAGGGGATGAAGGCAATCCAT
CAGGTGCCAGCGTGGAAAAGCGGAGAGGAAGGTTGATATGGGATGATGAA
GGGATTCAGAGTGGGGGGAAAAGGGGAAATGGAAGGAGGAAGATTTAGGC
AATTATCTTAACCAGGAGGATGCAATGGAGGGCGGAACACTGAAAAAGTG
GTGCAGGTTAAAAGAAATTTCGAAAGCAAGACTCGCATTAGATTGGGCAA
back to topCoding sequence (CDS) from alignment at scaffold_12:75014..76513- >mRNA_4938 ID=mRNA_4938|Name=jgi.p|Nanoce1779_2|590875|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at scaffold_12:75014..76513- (Nannochloropsis oceanica)
ATGGCCCCGGATCTCAAGGGCAAACGCTGCCTCGTGACCGGCGGGACTGA
ACCCGCATCCGTTGGCTACGTCTCAGCTTTGGCTTGTCTGGCTGCGGGCG
CCGTGCATGTCGTCGTGGTTGGCCGGGACCTTGCCAAGATGGGTAGCGCC
GTCCCCGCAGGCTTGTCGGGCTTGGAAGGCAATCTGAAAAAGCCCGAGAC
GATGGCAGAGCTTGTCGGAGCCGCCGTCGATAAGCTTGGTGGGGGGCTAG
ATGTATTGATTGTCAGTGGGGGAAATGGCTACTCAGAGTACTTGGGACTG
GATCCGACGGATGCCGCGAGCTATCATCTCATGTACGACATGGCCGTGCT
CTCCCCAATGTTTCTTGTCGCGGCCGCCGCCCCCTTTCTCAGCCAGGCCC
CCAACGGTGGCGGGTCTGTAGTGATGGTCAGCTCCCTTGCCGCGCACTGT
CCATGGCCTGACACTGCTCCTTTTAATCTGGCCAAGGCGGCACAGAACGC
ATTGGTTGAGACTCTGGCGTTCAAGCATCGACAAGACGGTTTCCGCGTGA
ATGGGGTGCTGCCCGGATGCATCCACACCAAAGCATTGGACGTAATGGCC
GTGAAAAAAGGCCGCGATCTTGGTGAATATGCCTCGTTGCGCGCTAATGC
GATCCCGATGGGTCGAAATGGCACGCCGGAAGAAGTGGCACAAGCCGTGT
TGTTTCTTGCCTCGCCCGCCTCCTCCTACATGACGGGGACGTTGTTACCG
GTGGACGGAGGATTAGGACTGTCTTCCTGGTTTAACACGCCAAGACTGTT
GTCAGAGTACATGGGGGGGACCAAGGTGGAGAGCACCAAAGCGTCCAAGG
CGTAG back to top
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