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Properties
| Property Name | Value |
|---|
| TranscriptId | 590953 |
| Track | FilteredModels2 |
| ProteinId | 590867 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:71611..73618 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4936 ID=mRNA_4936|Name=jgi.p|Nanoce1779_2|590867|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp
AGACAGATATGCCGCCGCTACCAGGTAGCTGCGGCCACCTTGTCCCCGTC
CTCTTTCTCCTGCTGTCCGTGACGGTCGCTGTTGTCGCAGTGCCCGCCCG
CACTCGGCCCCTTCAACCTCCCCCTCCTCCCACGAACACGCCCACTGCTG
CCAATCCCACAACGATGTACGATGAAAACATAGCCAAGACCCTGGCGGAT
TATTGTGCCGCCGCCTATTCTTGCGGATCCTTCCAAGGGTGTGGGAACTG
GAGCTGCAAGTCGTGTCAGCTCCACCCGAACGCTGAATCGTTGCGTTTCT
CGGGCGGGACTAACGGCACAGGCGTCGGCAGGGGCAGCGTTAGCGGCATG
GTTATCCACGACCCAGACTTGAACAAGGTCATTTTGGCATTTGCGGGAAC
ACAAGTAACGGATTTGATTGTGTGGGCAAATAATCTGAATGGTGAATTGA
TTGATTACCCGGCTTGTGGGGGAAATGGCTGCCAAGTACACGCAGGGTTT
TATGCCGATTATCAGGCGATTGCCCCCTCCCTGAAGGAATCTCTCGGCTA
CGTCCTCGCCCGCTACCCGCAATCGGGTCTATGGATAGCGGGGCATTCCC
TGGGGGGAGCTCTGGCGATGCTGGCTGTGGCGGATCTGAAGGGAAACCAC
TCGATACATGCCGAGGCCGTATACACGTTCGGCCAGCCCCGCGTGGGCAA
CCAAGCTTTTGCCATGCATCTCTACGATATCACGGGTCGTGCCCAGCCAC
CCCATGCCCCCACCCCTTACTTCCGCCTTGTCCACTACCAAGACCCTATC
CCCCACGCTCCGCCTGTTCTTTTGGGGTTCTGGCACGCGCCGACTGAAAT
TTTTTATACTGAAGATCAGACGAGCTATCAGGTCTGCAACGATTCAGGTG
AGGACTTTTACTGCTCCAACTCTTTCTTGTTCGCTTACCGAGTAGAAGAT
CATCTAAATTACCTCGGAGTTCCTTTTTAGTGGGGAAGACAGGGATGAGG
TGGAGAGGGATGGATGGCGAGTGAAGGGCCACACTGAAATCACTTCAGTG
TACCGTTGTAGAGAAGGAAGGAGGGAGGGGCTGTCAGAAATAGCATGAAG
AAAGGGAGGGAGGGATGGAGGGGGGTGTATACTTTGCATGTCAGTAGATT
TGGTGGGGTTGGAGGTCGCACGTGAGGGTGTATAGATAGGCCGAGGGCGC
GAGGAAAGGAGACGAAGAGGAAGTCAGGAGACTCAGACAGGGACAGAAAA
GGCAGCAGCAGCAACAGCAGCAGTTGTGTTAGTAGGAGTATCACCAAACA
GGTGATGAAAGAAGAAGAGGGGCAGGAATGTGTGGGTCA back to topprotein sequence of jgi.p|Nanoce1779_2|590867 >mRNA_4936-protein ID=mRNA_4936-protein|Name=jgi.p|Nanoce1779_2|590867|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MPPLPGSCGHLVPVLFLLLSVTVAVVAVPARTRPLQPPPPPTNTPTAANP
TTMYDENIAKTLADYCAAAYSCGSFQGCGNWSCKSCQLHPNAESLRFSGG
TNGTGVGRGSVSGMVIHDPDLNKVILAFAGTQVTDLIVWANNLNGELIDY
PACGGNGCQVHAGFYADYQAIAPSLKESLGYVLARYPQSGLWIAGHSLGG
ALAMLAVADLKGNHSIHAEAVYTFGQPRVGNQAFAMHLYDITGRAQPPHA
PTPYFRLVHYQDPIPHAPPVLLGFWHAPTEIFYTEDQTSYQVCNDSGEDF
YCSNSFLFAYRVEDHLNYLGVPF* back to topmRNA from alignment at scaffold_12:71611..73618- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4936 ID=mRNA_4936|Name=jgi.p|Nanoce1779_2|590867|organism=Nannochloropsis oceanica|type=mRNA|length=2008bp|location=Sequence derived from alignment at scaffold_12:71611..73618- (Nannochloropsis oceanica)
AGACAGATATGCCGCCGCTACCAGGTAGCTGCGGCCACCTTGTCCCCGTC
CTCTTTCTCCTGCTGTCCGTGACGGTCGCTGTTGTCGCAGTGCCCGCCCG
CACTCGGCCCCTTCAACCTCCCCCTCCTCCCACGAACACGCCCACTGCTG
CCAATCCCACAACGATGTACGATGAAAACATAGCCAAGACCCTGGCGGAT
TATTGTGCCGCCGCCTATTCTTGCGGATCCTTCCAAGGGTGTGGGAACTG
GAGCTGCAAGTCGTGTCAGGCAAGGCGATGGAAGGGACGGGAAGGGGGAA
AGAAGGGAAAGAGAGGGCAAATTGTGCAGAAAGAATGGGTGTTTAAGAGG
GTAAGGAGGAAGCGGGGGGAAAGGAACGATGACTAGCTAAACCTCCTGTG
TTTTCCTTCTTTCTTAGCTCCACCCGAACGCTGAATCGTTGCGTTTCTCG
GGCGGGACTAACGGCACAGGCGTCGGCAGGGGCAGCGTTAGCGGCATGGT
TATCCACGACCCAGACTTGAACAAGGTCATTTTGGCATTTGCGGGAACAC
AAGTAACGGATTTGATTGTGTGGGCAAATAATCTGAATGGTGAATTGATT
GATTACCCGGCTTGTGGGGGAAATGGCTGCCAAGTACACGCAGGGTTTTA
TGCCGATTATCAGGTAAGGTGTCACGGAGGGTTGGGAAGGGCGCTGGATG
GGACAGCTAGGTACGCAGGAAGTTCTCTTTTTTAGTTTTAAAGAAATCCT
GTGCTAGTGTGTATATATTGGCTTACTCGCGGCTTATTTTTCCAATCATG
ACTCCACGTTCCTAATATCCTCCTCTTTCACCCCCTCCAGGCGATTGCCC
CCTCCCTGAAGGAATCTCTCGGCTACGTCCTCGCCCGCTACCCGCAATCG
GGTCTATGGATAGCGGGGCATTCCCTGGGGGGAGCTCTGGCGATGCTGGC
TGTGGCGGATCTGAAGGGAAACCACTCGATACATGCCGAGGCCGTATACA
CGTTCGGTACGTCGTCATTATCGTCGTCAGTTATATTGCCATCTCCTTAT
CTTCACCACGCTTCGTGTCTCTATCTCTCGCTTCATTGTTCACCTTTCGG
CTTTTACTCACACTCCCTCCCTCCTTCCCTCCGCCCCTCGCTCCTTCAGG
CCAGCCCCGCGTGGGCAACCAAGCTTTTGCCATGCATCTCTACGATATCA
CGGGTCGTGCCCAGCCACCCCATGCCCCCACCCCTTACTTCCGCCTTGTC
CACTACCAAGACCCTATCCCCCACGCTCCGCCTGTTCTTTTGGGGTTCTG
GCACGCGCCGACTGAAATTTTTTATACTGAAGATCAGACGAGCTATCAGG
TGGGGAGGGAGGGGGGGAGGGAAGGGTAAGGCAGCAGGTGTTTTCTAGGC
TCGCACTCTTAATACCTTTGAAAACGAGCTCAAGAAAGTAGCAAAGATGT
CATTAAGTCACAAGTAATCTTCTCTCTGATATCTCTGAGGCTCGATTGTC
TCCATCGGCTCACATCCGCTCCCTTAATTCCCCCCTTCCCTCTCTCTTAG
GTCTGCAACGATTCAGGTGAGGACTTTTACTGCTCCAACTCTTTCTTGTT
CGCTTACCGAGTAGAAGATCATCTAAATTACCTCGGAGTTCCTTTTTAGT
GGGGAAGACAGGGATGAGGTGGAGAGGGATGGATGGCGAGTGAAGGGCCA
CACTGAAATCACTTCAGTGTACCGTTGTAGAGAAGGAAGGAGGGAGGGGC
TGTCAGAAATAGCATGAAGAAAGGGAGGGAGGGATGGAGGGGGGTGTATA
CTTTGCATGTCAGTAGATTTGGTGGGGTTGGAGGTCGCACGTGAGGGTGT
ATAGATAGGCCGAGGGCGCGAGGAAAGGAGACGAAGAGGAAGTCAGGAGA
CTCAGACAGGGACAGAAAAGGCAGCAGCAGCAACAGCAGCAGTTGTGTTA
GTAGGAGTATCACCAAACAGGTGATGAAAGAAGAAGAGGGGCAGGAATGT
GTGGGTCA back to topCoding sequence (CDS) from alignment at scaffold_12:71611..73618- >mRNA_4936 ID=mRNA_4936|Name=jgi.p|Nanoce1779_2|590867|organism=Nannochloropsis oceanica|type=CDS|length=4860bp|location=Sequence derived from alignment at scaffold_12:71611..73618- (Nannochloropsis oceanica)
GTCTGCAACGATTCAGGTGAGGACTTTTACTGCTCCAACTCTTTCTTGTT
CGCTTACCGAGTAGAAGATCATCTAAATTACCTCGGAGTTCCTTTTTAGG
CCAGCCCCGCGTGGGCAACCAAGCTTTTGCCATGCATCTCTACGATATCA
CGGGTCGTGCCCAGCCACCCCATGCCCCCACCCCTTACTTCCGCCTTGTC
CACTACCAAGACCCTATCCCCCACGCTCCGCCTGTTCTTTTGGGGTTCTG
GCACGCGCCGACTGAAATTTTTTATACTGAAGATCAGACGAGCTATCAGG
CGATTGCCCCCTCCCTGAAGGAATCTCTCGGCTACGTCCTCGCCCGCTAC
CCGCAATCGGGTCTATGGATAGCGGGGCATTCCCTGGGGGGAGCTCTGGC
GATGCTGGCTGTGGCGGATCTGAAGGGAAACCACTCGATACATGCCGAGG
CCGTATACACGTTCGCTCCACCCGAACGCTGAATCGTTGCGTTTCTCGGG
CGGGACTAACGGCACAGGCGTCGGCAGGGGCAGCGTTAGCGGCATGGTTA
TCCACGACCCAGACTTGAACAAGGTCATTTTGGCATTTGCGGGAACACAA
GTAACGGATTTGATTGTGTGGGCAAATAATCTGAATGGTGAATTGATTGA
TTACCCGGCTTGTGGGGGAAATGGCTGCCAAGTACACGCAGGGTTTTATG
CCGATTATCAGATGCCGCCGCTACCAGGTAGCTGCGGCCACCTTGTCCCC
GTCCTCTTTCTCCTGCTGTCCGTGACGGTCGCTGTTGTCGCAGTGCCCGC
CCGCACTCGGCCCCTTCAACCTCCCCCTCCTCCCACGAACACGCCCACTG
CTGCCAATCCCACAACGATGTACGATGAAAACATAGCCAAGACCCTGGCG
GATTATTGTGCCGCCGCCTATTCTTGCGGATCCTTCCAAGGGTGTGGGAA
CTGGAGCTGCAAGTCGTGTCAGGTCTGCAACGATTCAGGTGAGGACTTTT
ACTGCTCCAACTCTTTCTTGTTCGCTTACCGAGTAGAAGATCATCTAAAT
TACCTCGGAGTTCCTTTTTAGGCCAGCCCCGCGTGGGCAACCAAGCTTTT
GCCATGCATCTCTACGATATCACGGGTCGTGCCCAGCCACCCCATGCCCC
CACCCCTTACTTCCGCCTTGTCCACTACCAAGACCCTATCCCCCACGCTC
CGCCTGTTCTTTTGGGGTTCTGGCACGCGCCGACTGAAATTTTTTATACT
GAAGATCAGACGAGCTATCAGGCGATTGCCCCCTCCCTGAAGGAATCTCT
CGGCTACGTCCTCGCCCGCTACCCGCAATCGGGTCTATGGATAGCGGGGC
ATTCCCTGGGGGGAGCTCTGGCGATGCTGGCTGTGGCGGATCTGAAGGGA
AACCACTCGATACATGCCGAGGCCGTATACACGTTCGCTCCACCCGAACG
CTGAATCGTTGCGTTTCTCGGGCGGGACTAACGGCACAGGCGTCGGCAGG
GGCAGCGTTAGCGGCATGGTTATCCACGACCCAGACTTGAACAAGGTCAT
TTTGGCATTTGCGGGAACACAAGTAACGGATTTGATTGTGTGGGCAAATA
ATCTGAATGGTGAATTGATTGATTACCCGGCTTGTGGGGGAAATGGCTGC
CAAGTACACGCAGGGTTTTATGCCGATTATCAGATGCCGCCGCTACCAGG
TAGCTGCGGCCACCTTGTCCCCGTCCTCTTTCTCCTGCTGTCCGTGACGG
TCGCTGTTGTCGCAGTGCCCGCCCGCACTCGGCCCCTTCAACCTCCCCCT
CCTCCCACGAACACGCCCACTGCTGCCAATCCCACAACGATGTACGATGA
AAACATAGCCAAGACCCTGGCGGATTATTGTGCCGCCGCCTATTCTTGCG
GATCCTTCCAAGGGTGTGGGAACTGGAGCTGCAAGTCGTGTCAGGTCTGC
AACGATTCAGGTGAGGACTTTTACTGCTCCAACTCTTTCTTGTTCGCTTA
CCGAGTAGAAGATCATCTAAATTACCTCGGAGTTCCTTTTTAGGCCAGCC
CCGCGTGGGCAACCAAGCTTTTGCCATGCATCTCTACGATATCACGGGTC
GTGCCCAGCCACCCCATGCCCCCACCCCTTACTTCCGCCTTGTCCACTAC
CAAGACCCTATCCCCCACGCTCCGCCTGTTCTTTTGGGGTTCTGGCACGC
GCCGACTGAAATTTTTTATACTGAAGATCAGACGAGCTATCAGGCGATTG
CCCCCTCCCTGAAGGAATCTCTCGGCTACGTCCTCGCCCGCTACCCGCAA
TCGGGTCTATGGATAGCGGGGCATTCCCTGGGGGGAGCTCTGGCGATGCT
GGCTGTGGCGGATCTGAAGGGAAACCACTCGATACATGCCGAGGCCGTAT
ACACGTTCGCTCCACCCGAACGCTGAATCGTTGCGTTTCTCGGGCGGGAC
TAACGGCACAGGCGTCGGCAGGGGCAGCGTTAGCGGCATGGTTATCCACG
ACCCAGACTTGAACAAGGTCATTTTGGCATTTGCGGGAACACAAGTAACG
GATTTGATTGTGTGGGCAAATAATCTGAATGGTGAATTGATTGATTACCC
GGCTTGTGGGGGAAATGGCTGCCAAGTACACGCAGGGTTTTATGCCGATT
ATCAGATGCCGCCGCTACCAGGTAGCTGCGGCCACCTTGTCCCCGTCCTC
TTTCTCCTGCTGTCCGTGACGGTCGCTGTTGTCGCAGTGCCCGCCCGCAC
TCGGCCCCTTCAACCTCCCCCTCCTCCCACGAACACGCCCACTGCTGCCA
ATCCCACAACGATGTACGATGAAAACATAGCCAAGACCCTGGCGGATTAT
TGTGCCGCCGCCTATTCTTGCGGATCCTTCCAAGGGTGTGGGAACTGGAG
CTGCAAGTCGTGTCAGGTCTGCAACGATTCAGGTGAGGACTTTTACTGCT
CCAACTCTTTCTTGTTCGCTTACCGAGTAGAAGATCATCTAAATTACCTC
GGAGTTCCTTTTTAGGCCAGCCCCGCGTGGGCAACCAAGCTTTTGCCATG
CATCTCTACGATATCACGGGTCGTGCCCAGCCACCCCATGCCCCCACCCC
TTACTTCCGCCTTGTCCACTACCAAGACCCTATCCCCCACGCTCCGCCTG
TTCTTTTGGGGTTCTGGCACGCGCCGACTGAAATTTTTTATACTGAAGAT
CAGACGAGCTATCAGGCGATTGCCCCCTCCCTGAAGGAATCTCTCGGCTA
CGTCCTCGCCCGCTACCCGCAATCGGGTCTATGGATAGCGGGGCATTCCC
TGGGGGGAGCTCTGGCGATGCTGGCTGTGGCGGATCTGAAGGGAAACCAC
TCGATACATGCCGAGGCCGTATACACGTTCGCTCCACCCGAACGCTGAAT
CGTTGCGTTTCTCGGGCGGGACTAACGGCACAGGCGTCGGCAGGGGCAGC
GTTAGCGGCATGGTTATCCACGACCCAGACTTGAACAAGGTCATTTTGGC
ATTTGCGGGAACACAAGTAACGGATTTGATTGTGTGGGCAAATAATCTGA
ATGGTGAATTGATTGATTACCCGGCTTGTGGGGGAAATGGCTGCCAAGTA
CACGCAGGGTTTTATGCCGATTATCAGATGCCGCCGCTACCAGGTAGCTG
CGGCCACCTTGTCCCCGTCCTCTTTCTCCTGCTGTCCGTGACGGTCGCTG
TTGTCGCAGTGCCCGCCCGCACTCGGCCCCTTCAACCTCCCCCTCCTCCC
ACGAACACGCCCACTGCTGCCAATCCCACAACGATGTACGATGAAAACAT
AGCCAAGACCCTGGCGGATTATTGTGCCGCCGCCTATTCTTGCGGATCCT
TCCAAGGGTGTGGGAACTGGAGCTGCAAGTCGTGTCAGGTCTGCAACGAT
TCAGGTGAGGACTTTTACTGCTCCAACTCTTTCTTGTTCGCTTACCGAGT
AGAAGATCATCTAAATTACCTCGGAGTTCCTTTTTAGGCCAGCCCCGCGT
GGGCAACCAAGCTTTTGCCATGCATCTCTACGATATCACGGGTCGTGCCC
AGCCACCCCATGCCCCCACCCCTTACTTCCGCCTTGTCCACTACCAAGAC
CCTATCCCCCACGCTCCGCCTGTTCTTTTGGGGTTCTGGCACGCGCCGAC
TGAAATTTTTTATACTGAAGATCAGACGAGCTATCAGGCGATTGCCCCCT
CCCTGAAGGAATCTCTCGGCTACGTCCTCGCCCGCTACCCGCAATCGGGT
CTATGGATAGCGGGGCATTCCCTGGGGGGAGCTCTGGCGATGCTGGCTGT
GGCGGATCTGAAGGGAAACCACTCGATACATGCCGAGGCCGTATACACGT
TCGCTCCACCCGAACGCTGAATCGTTGCGTTTCTCGGGCGGGACTAACGG
CACAGGCGTCGGCAGGGGCAGCGTTAGCGGCATGGTTATCCACGACCCAG
ACTTGAACAAGGTCATTTTGGCATTTGCGGGAACACAAGTAACGGATTTG
ATTGTGTGGGCAAATAATCTGAATGGTGAATTGATTGATTACCCGGCTTG
TGGGGGAAATGGCTGCCAAGTACACGCAGGGTTTTATGCCGATTATCAGA
TGCCGCCGCTACCAGGTAGCTGCGGCCACCTTGTCCCCGTCCTCTTTCTC
CTGCTGTCCGTGACGGTCGCTGTTGTCGCAGTGCCCGCCCGCACTCGGCC
CCTTCAACCTCCCCCTCCTCCCACGAACACGCCCACTGCTGCCAATCCCA
CAACGATGTACGATGAAAACATAGCCAAGACCCTGGCGGATTATTGTGCC
GCCGCCTATTCTTGCGGATCCTTCCAAGGGTGTGGGAACTGGAGCTGCAA
GTCGTGTCAG back to top
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