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Properties
| Property Name | Value |
|---|
| TranscriptId | 590947 |
| Track | FilteredModels2 |
| ProteinId | 590861 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:65745..67418 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4934 ID=mRNA_4934|Name=jgi.p|Nanoce1779_2|590861|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
CAGATTAGGCTAGCACCAACAGCGCAAACTAGCGATCATGGCGGGCGCAG
CAGCAAGCGGTGGCAAAGAAAGGCCTGTGAAGCCGCTAGGTTGGGTATGG
TTCAGTGGGCTGATGCTCGGTATGACGGCCTGCCTTCCTTACATCATTGA
GTACATGTGCTCCAAGTCGTATGCAACACACCGTCATGGCGTGGTGCTGG
TGACGAGCGCGACCTCAGCAGTTGGTAAAGCGGCGTGCTTGGCATTGCTG
GCAGACGGGTACACGGTTTATGGTGGCGTGCGCGTCAAATCGGAAGAGCA
CTTGGTGAAAGAGCTGGGTTCTCCGAAGATCTTACCTATTGTCCTGGACA
TCCACAAATCCGAAACAATCGAGGCGGCCGTGGGAAAGGTGAAGTCCGAG
CTCGAAGGGCGGGCGTTCACTGCTCTTGTCAACACTATCGAAGCCGGTGG
CTCCACTAGTCCGATGGAGACGCAAGACCTGCCCTATCTCAAACGCTTGT
TGGAGACAAACACCGTAGGCACGCTTGGGCTAGTCCAGATCTTCCTACCT
CTCATCCGGGAGCAAGGCTCGAGGATCGTCCTCATGTCCTCGCTGTGCGC
CCACCTGACCCCTCCTCTCTTTGGGGGGCTGTGTGCTAGTAAGGCGGCTT
TGGAGAGCCTGGCTGACGCTATGAGGCGGGAACTCGCGCCCTTCCAGATT
TCAATCTCGTCCATCGAACCTGCCGTGACTTCGCCGGCGGAAGAGAATGA
GGGGGGGGGGCAGAAAGCGAGGGAGGTGTATGCTCACTTGTTTGCGGATG
ATAAAGCGCAGGTGTTGGTGTCGCCGAGTGCGGCTGGAGCGGGAGGAGGA
GGAGCAGCTGCAGCTGCAGCAGATGCGGTGGCACGGGCGGTGATTCATGC
GGTCTCGAGCACACACCCGAAGATAAGATACCCGGCAGGAAGAGTGGGTC
GGCTGCCTGCACCCTTTGTGGCTTTCGTGTCGTGGGGTCTGCCTGGGAGA
GTCCAAGATGTCTTGCTTGGCTAGGATAGCGAGGTAGAGGGGTATGAGTG
GGGATGATATGACAGGATGGGAGGGAGGGAGAGACGACCTAGGTGGGGGA
ACGAGAGGGAGGGAAAAGGAAGGAGCGCAGGAGAAAACGGCGGCAGCAGC
AAAGGCAAAGGCAAAGGCAAAG back to topprotein sequence of jgi.p|Nanoce1779_2|590861 >mRNA_4934-protein ID=mRNA_4934-protein|Name=jgi.p|Nanoce1779_2|590861|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MAGAAASGGKERPVKPLGWVWFSGLMLGMTACLPYIIEYMCSKSYATHRH
GVVLVTSATSAVGKAACLALLADGYTVYGGVRVKSEEHLVKELGSPKILP
IVLDIHKSETIEAAVGKVKSELEGRAFTALVNTIEAGGSTSPMETQDLPY
LKRLLETNTVGTLGLVQIFLPLIREQGSRIVLMSSLCAHLTPPLFGGLCA
SKAALESLADAMRRELAPFQISISSIEPAVTSPAEENEGGGQKAREVYAH
LFADDKAQVLVSPSAAGAGGGGAAAAAADAVARAVIHAVSSTHPKIRYPA
GRVGRLPAPFVAFVSWGLPGRVQDVLLG* back to topmRNA from alignment at scaffold_12:65745..67418- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4934 ID=mRNA_4934|Name=jgi.p|Nanoce1779_2|590861|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp|location=Sequence derived from alignment at scaffold_12:65745..67418- (Nannochloropsis oceanica)
CAGATTAGGCTAGCACCAACAGCGCAAACTAGCGATCATGGCGGGCGCAG
CAGCAAGCGGTGGCAAAGAAAGGCCTGTGAAGCCGCTAGGTTGGGTATGG
TTCAGTGGGCTGATGCTCGGTATGACGGCCTGCCTTCCTTACATCATTGA
GTACATGTGCTCCAAGTCGTATGCAACACACCGTCATGGCGTGGTGCTGG
TGACGAGCGCGACCTCAGCAGTTGGTAAAGCGGCGTGCTTGGCATTGCTG
GCAGACGGGTACACGGTACGTGTATGAGGGAGGGTGCGGAGGGTGGGAAT
GGAGGGTTGAAATGGACCCGGGATTAAAGTGAGGAAATGAGACGCAAAGC
GAGGGAGTTCGGGTGAGCGAGGGGACAAAGGATGAGCAGAGTAAGCTAAT
AGTAACGTGTGCCTGATGAGACATGCTCTCCGTCCTCTTTCCTTTCAGGT
TTATGGTGGCGTGCGCGTCAAATCGGAAGAGCACTTGGTGAAAGAGCTGG
GTTCTCCGAAGATCTTACCTATTGTCCTGGACATCCACAAATCCGAAACA
ATCGAGGCGGCCGTGGGAAAGGTAAATGGAGCAGGAAAGGAACAAGTGAT
TGGATATGTGTATTTGTGAGGCTCTCATCACGTTTTCTGTGTGGAATCTA
TCCCATAGTCGCCTGCATGCCTGTTTTCACCCCTTGCTCTCCCTCCCTAC
CTCCCAGGTGAAGTCCGAGCTCGAAGGGCGGGCGTTCACTGCTCTTGTCA
ACACTATCGAAGCCGGTGGCTCCACTAGTCCGATGGAGACGCAAGACCTG
CCCTATCTCAAACGCTTGTTGGAGACAAACACCGTAGGCACGCTTGGGCT
AGTCCAGATCTTCCTACCTCTCATCCGGTACCTCCTCCTTCTCCTCATTC
CTTCCCCCATTCCCCTTCCCCCACGATCCTCCTATCTTCAACTTTCTCCC
TCCCTCCCTTGCTGTTTCACTACCCTTGAGACGGGAGTATTGATGCCCGT
CTGACTCCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCTTCGCTTCCTAC
CCGATGACAGGGAGCAAGGCTCGAGGATCGTCCTCATGTCCTCGCTGTGC
GCCCACCTGACCCCTCCTCTCTTTGGGGGGCTGTGTGCTAGTAAGGCGGC
TTTGGAGAGCCTGGCTGACGCTATGAGGCGGGAACTCGCGCCCTTCCAGA
TTTCAATCTCGTCCATCGAACCTGCCGTGACTTCGCCGGCGGAAGAGAAT
GAGGGGGGGGGGCAGAAAGCGAGGGAGGTGTATGCTCACTTGTTTGCGGA
TGATAAAGCGCAGGTGTTGGTGTCGCCGAGTGCGGCTGGAGCGGGAGGAG
GAGGAGCAGCTGCAGCTGCAGCAGATGCGGTGGCACGGGCGGTGATTCAT
GCGGTCTCGAGCACACACCCGAAGATAAGATACCCGGCAGGAAGAGTGGG
TCGGCTGCCTGCACCCTTTGTGGCTTTCGTGTCGTGGGGTCTGCCTGGGA
GAGTCCAAGATGTCTTGCTTGGCTAGGATAGCGAGGTAGAGGGGTATGAG
TGGGGATGATATGACAGGATGGGAGGGAGGGAGAGACGACCTAGGTGGGG
GAACGAGAGGGAGGGAAAAGGAAGGAGCGCAGGAGAAAACGGCGGCAGCA
GCAAAGGCAAAGGCAAAGGCAAAG back to topCoding sequence (CDS) from alignment at scaffold_12:65745..67418- >mRNA_4934 ID=mRNA_4934|Name=jgi.p|Nanoce1779_2|590861|organism=Nannochloropsis oceanica|type=CDS|length=3948bp|location=Sequence derived from alignment at scaffold_12:65745..67418- (Nannochloropsis oceanica)
GGAGCAAGGCTCGAGGATCGTCCTCATGTCCTCGCTGTGCGCCCACCTGA
CCCCTCCTCTCTTTGGGGGGCTGTGTGCTAGTAAGGCGGCTTTGGAGAGC
CTGGCTGACGCTATGAGGCGGGAACTCGCGCCCTTCCAGATTTCAATCTC
GTCCATCGAACCTGCCGTGACTTCGCCGGCGGAAGAGAATGAGGGGGGGG
GGCAGAAAGCGAGGGAGGTGTATGCTCACTTGTTTGCGGATGATAAAGCG
CAGGTGTTGGTGTCGCCGAGTGCGGCTGGAGCGGGAGGAGGAGGAGCAGC
TGCAGCTGCAGCAGATGCGGTGGCACGGGCGGTGATTCATGCGGTCTCGA
GCACACACCCGAAGATAAGATACCCGGCAGGAAGAGTGGGTCGGCTGCCT
GCACCCTTTGTGGCTTTCGTGTCGTGGGGTCTGCCTGGGAGAGTCCAAGA
TGTCTTGCTTGGCTAGGTGAAGTCCGAGCTCGAAGGGCGGGCGTTCACTG
CTCTTGTCAACACTATCGAAGCCGGTGGCTCCACTAGTCCGATGGAGACG
CAAGACCTGCCCTATCTCAAACGCTTGTTGGAGACAAACACCGTAGGCAC
GCTTGGGCTAGTCCAGATCTTCCTACCTCTCATCCGGTTTATGGTGGCGT
GCGCGTCAAATCGGAAGAGCACTTGGTGAAAGAGCTGGGTTCTCCGAAGA
TCTTACCTATTGTCCTGGACATCCACAAATCCGAAACAATCGAGGCGGCC
GTGGGAAAGATGGCGGGCGCAGCAGCAAGCGGTGGCAAAGAAAGGCCTGT
GAAGCCGCTAGGTTGGGTATGGTTCAGTGGGCTGATGCTCGGTATGACGG
CCTGCCTTCCTTACATCATTGAGTACATGTGCTCCAAGTCGTATGCAACA
CACCGTCATGGCGTGGTGCTGGTGACGAGCGCGACCTCAGCAGTTGGTAA
AGCGGCGTGCTTGGCATTGCTGGCAGACGGGTACACGGGAGCAAGGCTCG
AGGATCGTCCTCATGTCCTCGCTGTGCGCCCACCTGACCCCTCCTCTCTT
TGGGGGGCTGTGTGCTAGTAAGGCGGCTTTGGAGAGCCTGGCTGACGCTA
TGAGGCGGGAACTCGCGCCCTTCCAGATTTCAATCTCGTCCATCGAACCT
GCCGTGACTTCGCCGGCGGAAGAGAATGAGGGGGGGGGGCAGAAAGCGAG
GGAGGTGTATGCTCACTTGTTTGCGGATGATAAAGCGCAGGTGTTGGTGT
CGCCGAGTGCGGCTGGAGCGGGAGGAGGAGGAGCAGCTGCAGCTGCAGCA
GATGCGGTGGCACGGGCGGTGATTCATGCGGTCTCGAGCACACACCCGAA
GATAAGATACCCGGCAGGAAGAGTGGGTCGGCTGCCTGCACCCTTTGTGG
CTTTCGTGTCGTGGGGTCTGCCTGGGAGAGTCCAAGATGTCTTGCTTGGC
TAGGTGAAGTCCGAGCTCGAAGGGCGGGCGTTCACTGCTCTTGTCAACAC
TATCGAAGCCGGTGGCTCCACTAGTCCGATGGAGACGCAAGACCTGCCCT
ATCTCAAACGCTTGTTGGAGACAAACACCGTAGGCACGCTTGGGCTAGTC
CAGATCTTCCTACCTCTCATCCGGTTTATGGTGGCGTGCGCGTCAAATCG
GAAGAGCACTTGGTGAAAGAGCTGGGTTCTCCGAAGATCTTACCTATTGT
CCTGGACATCCACAAATCCGAAACAATCGAGGCGGCCGTGGGAAAGATGG
CGGGCGCAGCAGCAAGCGGTGGCAAAGAAAGGCCTGTGAAGCCGCTAGGT
TGGGTATGGTTCAGTGGGCTGATGCTCGGTATGACGGCCTGCCTTCCTTA
CATCATTGAGTACATGTGCTCCAAGTCGTATGCAACACACCGTCATGGCG
TGGTGCTGGTGACGAGCGCGACCTCAGCAGTTGGTAAAGCGGCGTGCTTG
GCATTGCTGGCAGACGGGTACACGGGAGCAAGGCTCGAGGATCGTCCTCA
TGTCCTCGCTGTGCGCCCACCTGACCCCTCCTCTCTTTGGGGGGCTGTGT
GCTAGTAAGGCGGCTTTGGAGAGCCTGGCTGACGCTATGAGGCGGGAACT
CGCGCCCTTCCAGATTTCAATCTCGTCCATCGAACCTGCCGTGACTTCGC
CGGCGGAAGAGAATGAGGGGGGGGGGCAGAAAGCGAGGGAGGTGTATGCT
CACTTGTTTGCGGATGATAAAGCGCAGGTGTTGGTGTCGCCGAGTGCGGC
TGGAGCGGGAGGAGGAGGAGCAGCTGCAGCTGCAGCAGATGCGGTGGCAC
GGGCGGTGATTCATGCGGTCTCGAGCACACACCCGAAGATAAGATACCCG
GCAGGAAGAGTGGGTCGGCTGCCTGCACCCTTTGTGGCTTTCGTGTCGTG
GGGTCTGCCTGGGAGAGTCCAAGATGTCTTGCTTGGCTAGGTGAAGTCCG
AGCTCGAAGGGCGGGCGTTCACTGCTCTTGTCAACACTATCGAAGCCGGT
GGCTCCACTAGTCCGATGGAGACGCAAGACCTGCCCTATCTCAAACGCTT
GTTGGAGACAAACACCGTAGGCACGCTTGGGCTAGTCCAGATCTTCCTAC
CTCTCATCCGGTTTATGGTGGCGTGCGCGTCAAATCGGAAGAGCACTTGG
TGAAAGAGCTGGGTTCTCCGAAGATCTTACCTATTGTCCTGGACATCCAC
AAATCCGAAACAATCGAGGCGGCCGTGGGAAAGATGGCGGGCGCAGCAGC
AAGCGGTGGCAAAGAAAGGCCTGTGAAGCCGCTAGGTTGGGTATGGTTCA
GTGGGCTGATGCTCGGTATGACGGCCTGCCTTCCTTACATCATTGAGTAC
ATGTGCTCCAAGTCGTATGCAACACACCGTCATGGCGTGGTGCTGGTGAC
GAGCGCGACCTCAGCAGTTGGTAAAGCGGCGTGCTTGGCATTGCTGGCAG
ACGGGTACACGGGAGCAAGGCTCGAGGATCGTCCTCATGTCCTCGCTGTG
CGCCCACCTGACCCCTCCTCTCTTTGGGGGGCTGTGTGCTAGTAAGGCGG
CTTTGGAGAGCCTGGCTGACGCTATGAGGCGGGAACTCGCGCCCTTCCAG
ATTTCAATCTCGTCCATCGAACCTGCCGTGACTTCGCCGGCGGAAGAGAA
TGAGGGGGGGGGGCAGAAAGCGAGGGAGGTGTATGCTCACTTGTTTGCGG
ATGATAAAGCGCAGGTGTTGGTGTCGCCGAGTGCGGCTGGAGCGGGAGGA
GGAGGAGCAGCTGCAGCTGCAGCAGATGCGGTGGCACGGGCGGTGATTCA
TGCGGTCTCGAGCACACACCCGAAGATAAGATACCCGGCAGGAAGAGTGG
GTCGGCTGCCTGCACCCTTTGTGGCTTTCGTGTCGTGGGGTCTGCCTGGG
AGAGTCCAAGATGTCTTGCTTGGCTAGGTGAAGTCCGAGCTCGAAGGGCG
GGCGTTCACTGCTCTTGTCAACACTATCGAAGCCGGTGGCTCCACTAGTC
CGATGGAGACGCAAGACCTGCCCTATCTCAAACGCTTGTTGGAGACAAAC
ACCGTAGGCACGCTTGGGCTAGTCCAGATCTTCCTACCTCTCATCCGGTT
TATGGTGGCGTGCGCGTCAAATCGGAAGAGCACTTGGTGAAAGAGCTGGG
TTCTCCGAAGATCTTACCTATTGTCCTGGACATCCACAAATCCGAAACAA
TCGAGGCGGCCGTGGGAAAGATGGCGGGCGCAGCAGCAAGCGGTGGCAAA
GAAAGGCCTGTGAAGCCGCTAGGTTGGGTATGGTTCAGTGGGCTGATGCT
CGGTATGACGGCCTGCCTTCCTTACATCATTGAGTACATGTGCTCCAAGT
CGTATGCAACACACCGTCATGGCGTGGTGCTGGTGACGAGCGCGACCTCA
GCAGTTGGTAAAGCGGCGTGCTTGGCATTGCTGGCAGACGGGTACACG back to top
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