jgi.p|Nanoce1779_2|590855, mRNA_4933 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590855
Unique NamemRNA_4933
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2004
Alignment locationscaffold_12:62545..64548 -

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Properties
Property NameValue
TranscriptId590941
TrackFilteredModels2
ProteinId590855
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:62545..64548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590855gene_4933Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590855mRNA_4933-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4933CDS_4933Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4933 ID=mRNA_4933|Name=jgi.p|Nanoce1779_2|590855|organism=Nannochloropsis oceanica|type=mRNA|length=2004bp
CAGGGCAATTACCGGTGGTTGGTTCCGTCAATCCACCGCGCATGCACCGG
CCATTCGAGCTTCAATTTATGCTTTTACTACTTTTCATGCCTTTTCTGTG
CGATGCTTTTACGGTAACCCATCGGCGATGCCGTACAAGCTTCCTCCTTC
CAGCCATTGTCCGTCACCCCACGGCTGCCGCAAGGGTACGGATCAGGCAG
CTCGATCCGCAAGCCAACCACCTCTCATCCTTCTACTTTTCCTCCTCCTC
CTCTTTCTTCTTCCTCTCCTCTCTACGCTCCGCCTCCATCTGTTCGTCCT
CCACCACCACCATCGCCAACTCAGTTCCATTGCCGCACCTCTCCCTCGTT
TTGGACATAAACAAAACCATCCTTCTGGAGGATCCCGCCGGCGGCAAAGA
TGTCCAAGCCCTCCTCAATGAGATCGTTTCCGAAATTGCATACGGCCGTG
TGGATCAGCTAAAGCCGCAGCACAAACAGCAACAGTCGCGAAAATGGTCG
GCCGATCTAAGCATGTCTTTGCACGTGGGTCCCAGGCCACCAGGCACACC
TCCCTCCCTTGTTTCCTACGCATCCTTCGTTCACGATACCTACCCCGACC
TACCTGCAATCAATCTGAAGCAAATGAAAGCCATCCGAGACGGGCTAAAA
GGCACATTTACACTTCCGGGGCAACCGGGCCATCGTTTTGCATCGGAGAT
CACGATGCTTACAGAGGCGCTCCGTCTACCACCGGGACTCTCCCCTGGCT
TGATGAAGGCTGCAGGCTTGGAGGGGCAGAAGCGAGTGGGTATTCTTCCA
GCTTTCTTCCATTTCCTCCTTAGACTACAAGCAGAGCAGGAGACGCAGCA
ACAGCAGGAAGAGGAGGGAGGAAGAGGAAGTGATACCTTCTCCACATCAT
TTTCCAAATCACCCTCTTCAATCTCACCTGCAAGTCAACAGAAGAAGGAG
GCCTCATCTTGGCGATTTGCAGTGCAATTCCGCACTTTCGGTGAAGACTT
GCCGAGGGTTATCCAGGAATTCAACTTGTTTGTGCGTGGAAATCACCCGC
TGTTTCCCGGACAACGTCTAGGGACGGAGGGGGAGGAAGGGAGGGAAGAC
GAGATGGTGGACTATGCATTTGACATGGTGGGCGATCCGGAGTGTTTTGG
ATGTATGTTTCGTGATGCTGAAGGACCGCCTGTCCTCCTTCTCGGTACCT
TACACCCTCCCTCCTGCCGCGCCGATCTCCGGCATCTCCTCCAAGCACAC
AAGGGAAAACAGCAGCTCCTGTCACAGAAGCAGCAGCAGCAGCAGCAGCA
ACAACAACAACAACAACAACAACACCAACAACAACAACAACAACGACAAC
AATCACCACGTCGCATTCTAGAGGGGATCCCTGCCATCCATGCATTTATG
CAACAGCGGCAAGCAAGCCTAAGGCCTTCGCTCGCCATCCGCGACTACTG
GCCTTGGTGGCGTCAGAACCTGGAGGCAAGCGAAGCAGGAAAATTGGTGC
CCTTACCTTGTTTGAAGGGAGAGAGGGAGGGAGGAGAGGAAGGGAGGGGA
ACTGAAGAGGAGGAGTGGTTTACCGTGGTGATAGATGATAATATCGAGCA
TACTCGGGCCCATATAATTGACTTGCGTTGTGGTGAGACGGGTGAGGAGG
TGCCGTTTGAGGAAGGGGTGGAGGGAGGGCACCTTGTGCGAGCAGAACCT
TATCTGGCGATCCGGAATCCGGAAAATTATTTTTGGGATTGTCTGAAAGC
GTCTTTGAAGAGGAGGAAGGAGAGGAGGAGGCGGAGTAGGAAGGACGAGG
GAAGGAACGCCGGGCAATCGCCGGCAGGAGGATAGTAAAGCATGGATGCG
ATCCTTATGTGTTGTCGATATAGTGAACTAAGTCGTAATTGAAATTAGCA
AATTGAGTGGAAAATTGAGCGGATAATGCGAAAATTATAAAATGATCGAA
TGAGCACGGGTTTCGAAGCCATCAGAGGACAAAGTGTGTCCTCGCACACG
ATCG
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protein sequence of jgi.p|Nanoce1779_2|590855

>mRNA_4933-protein ID=mRNA_4933-protein|Name=jgi.p|Nanoce1779_2|590855|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MHRPFELQFMLLLLFMPFLCDAFTVTHRRCRTSFLLPAIVRHPTAAARVR
IRQLDPQANHLSSFYFSSSSSFFFLSSLRSASICSSSTTTIANSVPLPHL
SLVLDINKTILLEDPAGGKDVQALLNEIVSEIAYGRVDQLKPQHKQQQSR
KWSADLSMSLHVGPRPPGTPPSLVSYASFVHDTYPDLPAINLKQMKAIRD
GLKGTFTLPGQPGHRFASEITMLTEALRLPPGLSPGLMKAAGLEGQKRVG
ILPAFFHFLLRLQAEQETQQQQEEEGGRGSDTFSTSFSKSPSSISPASQQ
KKEASSWRFAVQFRTFGEDLPRVIQEFNLFVRGNHPLFPGQRLGTEGEEG
REDEMVDYAFDMVGDPECFGCMFRDAEGPPVLLLGTLHPPSCRADLRHLL
QAHKGKQQLLSQKQQQQQQQQQQQQQQHQQQQQQRQQSPRRILEGIPAIH
AFMQQRQASLRPSLAIRDYWPWWRQNLEASEAGKLVPLPCLKGEREGGEE
GRGTEEEEWFTVVIDDNIEHTRAHIIDLRCGETGEEVPFEEGVEGGHLVR
AEPYLAIRNPENYFWDCLKASLKRRKERRRRSRKDEGRNAGQSPAGG*
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mRNA from alignment at scaffold_12:62545..64548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4933 ID=mRNA_4933|Name=jgi.p|Nanoce1779_2|590855|organism=Nannochloropsis oceanica|type=mRNA|length=2004bp|location=Sequence derived from alignment at scaffold_12:62545..64548- (Nannochloropsis oceanica)
CAGGGCAATTACCGGTGGTTGGTTCCGTCAATCCACCGCGCATGCACCGG
CCATTCGAGCTTCAATTTATGCTTTTACTACTTTTCATGCCTTTTCTGTG
CGATGCTTTTACGGTAACCCATCGGCGATGCCGTACAAGCTTCCTCCTTC
CAGCCATTGTCCGTCACCCCACGGCTGCCGCAAGGGTACGGATCAGGCAG
CTCGATCCGCAAGCCAACCACCTCTCATCCTTCTACTTTTCCTCCTCCTC
CTCTTTCTTCTTCCTCTCCTCTCTACGCTCCGCCTCCATCTGTTCGTCCT
CCACCACCACCATCGCCAACTCAGTTCCATTGCCGCACCTCTCCCTCGTT
TTGGACATAAACAAAACCATCCTTCTGGAGGATCCCGCCGGCGGCAAAGA
TGTCCAAGCCCTCCTCAATGAGATCGTTTCCGAAATTGCATACGGCCGTG
TGGATCAGCTAAAGCCGCAGCACAAACAGCAACAGTCGCGAAAATGGTCG
GCCGATCTAAGCATGTCTTTGCACGTGGGTCCCAGGCCACCAGGCACACC
TCCCTCCCTTGTTTCCTACGCATCCTTCGTTCACGATACCTACCCCGACC
TACCTGCAATCAATCTGAAGCAAATGAAAGCCATCCGAGACGGGCTAAAA
GGCACATTTACACTTCCGGGGCAACCGGGCCATCGTTTTGCATCGGAGAT
CACGATGCTTACAGAGGCGCTCCGTCTACCACCGGGACTCTCCCCTGGCT
TGATGAAGGCTGCAGGCTTGGAGGGGCAGAAGCGAGTGGGTATTCTTCCA
GCTTTCTTCCATTTCCTCCTTAGACTACAAGCAGAGCAGGAGACGCAGCA
ACAGCAGGAAGAGGAGGGAGGAAGAGGAAGTGATACCTTCTCCACATCAT
TTTCCAAATCACCCTCTTCAATCTCACCTGCAAGTCAACAGAAGAAGGAG
GCCTCATCTTGGCGATTTGCAGTGCAATTCCGCACTTTCGGTGAAGACTT
GCCGAGGGTTATCCAGGAATTCAACTTGTTTGTGCGTGGAAATCACCCGC
TGTTTCCCGGACAACGTCTAGGGACGGAGGGGGAGGAAGGGAGGGAAGAC
GAGATGGTGGACTATGCATTTGACATGGTGGGCGATCCGGAGTGTTTTGG
ATGTATGTTTCGTGATGCTGAAGGACCGCCTGTCCTCCTTCTCGGTACCT
TACACCCTCCCTCCTGCCGCGCCGATCTCCGGCATCTCCTCCAAGCACAC
AAGGGAAAACAGCAGCTCCTGTCACAGAAGCAGCAGCAGCAGCAGCAGCA
ACAACAACAACAACAACAACAACACCAACAACAACAACAACAACGACAAC
AATCACCACGTCGCATTCTAGAGGGGATCCCTGCCATCCATGCATTTATG
CAACAGCGGCAAGCAAGCCTAAGGCCTTCGCTCGCCATCCGCGACTACTG
GCCTTGGTGGCGTCAGAACCTGGAGGCAAGCGAAGCAGGAAAATTGGTGC
CCTTACCTTGTTTGAAGGGAGAGAGGGAGGGAGGAGAGGAAGGGAGGGGA
ACTGAAGAGGAGGAGTGGTTTACCGTGGTGATAGATGATAATATCGAGCA
TACTCGGGCCCATATAATTGACTTGCGTTGTGGTGAGACGGGTGAGGAGG
TGCCGTTTGAGGAAGGGGTGGAGGGAGGGCACCTTGTGCGAGCAGAACCT
TATCTGGCGATCCGGAATCCGGAAAATTATTTTTGGGATTGTCTGAAAGC
GTCTTTGAAGAGGAGGAAGGAGAGGAGGAGGCGGAGTAGGAAGGACGAGG
GAAGGAACGCCGGGCAATCGCCGGCAGGAGGATAGTAAAGCATGGATGCG
ATCCTTATGTGTTGTCGATATAGTGAACTAAGTCGTAATTGAAATTAGCA
AATTGAGTGGAAAATTGAGCGGATAATGCGAAAATTATAAAATGATCGAA
TGAGCACGGGTTTCGAAGCCATCAGAGGACAAAGTGTGTCCTCGCACACG
ATCG
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Coding sequence (CDS) from alignment at scaffold_12:62545..64548-

>mRNA_4933 ID=mRNA_4933|Name=jgi.p|Nanoce1779_2|590855|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at scaffold_12:62545..64548- (Nannochloropsis oceanica)
ATGCACCGGCCATTCGAGCTTCAATTTATGCTTTTACTACTTTTCATGCC
TTTTCTGTGCGATGCTTTTACGGTAACCCATCGGCGATGCCGTACAAGCT
TCCTCCTTCCAGCCATTGTCCGTCACCCCACGGCTGCCGCAAGGGTACGG
ATCAGGCAGCTCGATCCGCAAGCCAACCACCTCTCATCCTTCTACTTTTC
CTCCTCCTCCTCTTTCTTCTTCCTCTCCTCTCTACGCTCCGCCTCCATCT
GTTCGTCCTCCACCACCACCATCGCCAACTCAGTTCCATTGCCGCACCTC
TCCCTCGTTTTGGACATAAACAAAACCATCCTTCTGGAGGATCCCGCCGG
CGGCAAAGATGTCCAAGCCCTCCTCAATGAGATCGTTTCCGAAATTGCAT
ACGGCCGTGTGGATCAGCTAAAGCCGCAGCACAAACAGCAACAGTCGCGA
AAATGGTCGGCCGATCTAAGCATGTCTTTGCACGTGGGTCCCAGGCCACC
AGGCACACCTCCCTCCCTTGTTTCCTACGCATCCTTCGTTCACGATACCT
ACCCCGACCTACCTGCAATCAATCTGAAGCAAATGAAAGCCATCCGAGAC
GGGCTAAAAGGCACATTTACACTTCCGGGGCAACCGGGCCATCGTTTTGC
ATCGGAGATCACGATGCTTACAGAGGCGCTCCGTCTACCACCGGGACTCT
CCCCTGGCTTGATGAAGGCTGCAGGCTTGGAGGGGCAGAAGCGAGTGGGT
ATTCTTCCAGCTTTCTTCCATTTCCTCCTTAGACTACAAGCAGAGCAGGA
GACGCAGCAACAGCAGGAAGAGGAGGGAGGAAGAGGAAGTGATACCTTCT
CCACATCATTTTCCAAATCACCCTCTTCAATCTCACCTGCAAGTCAACAG
AAGAAGGAGGCCTCATCTTGGCGATTTGCAGTGCAATTCCGCACTTTCGG
TGAAGACTTGCCGAGGGTTATCCAGGAATTCAACTTGTTTGTGCGTGGAA
ATCACCCGCTGTTTCCCGGACAACGTCTAGGGACGGAGGGGGAGGAAGGG
AGGGAAGACGAGATGGTGGACTATGCATTTGACATGGTGGGCGATCCGGA
GTGTTTTGGATGTATGTTTCGTGATGCTGAAGGACCGCCTGTCCTCCTTC
TCGGTACCTTACACCCTCCCTCCTGCCGCGCCGATCTCCGGCATCTCCTC
CAAGCACACAAGGGAAAACAGCAGCTCCTGTCACAGAAGCAGCAGCAGCA
GCAGCAGCAACAACAACAACAACAACAACAACACCAACAACAACAACAAC
AACGACAACAATCACCACGTCGCATTCTAGAGGGGATCCCTGCCATCCAT
GCATTTATGCAACAGCGGCAAGCAAGCCTAAGGCCTTCGCTCGCCATCCG
CGACTACTGGCCTTGGTGGCGTCAGAACCTGGAGGCAAGCGAAGCAGGAA
AATTGGTGCCCTTACCTTGTTTGAAGGGAGAGAGGGAGGGAGGAGAGGAA
GGGAGGGGAACTGAAGAGGAGGAGTGGTTTACCGTGGTGATAGATGATAA
TATCGAGCATACTCGGGCCCATATAATTGACTTGCGTTGTGGTGAGACGG
GTGAGGAGGTGCCGTTTGAGGAAGGGGTGGAGGGAGGGCACCTTGTGCGA
GCAGAACCTTATCTGGCGATCCGGAATCCGGAAAATTATTTTTGGGATTG
TCTGAAAGCGTCTTTGAAGAGGAGGAAGGAGAGGAGGAGGCGGAGTAGGA
AGGACGAGGGAAGGAACGCCGGGCAATCGCCGGCAGGAGGATAG
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Synonyms
Publications