jgi.p|Nanoce1779_2|590852, mRNA_4932 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590852
Unique Name	mRNA_4932
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	766
Alignment location	scaffold_12:60952..61717 +

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Properties


Property Name	Value
TranscriptId	590938
Track	FilteredModels2
ProteinId	590852

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:60952..61717 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590852	gene_4932	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590852	mRNA_4932-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4932	CDS_4932	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:60952..61717+
coding sequence from alignment at scaffold_12:60952..61717+

mRNA sequence

>mRNA_4932 ID=mRNA_4932|Name=jgi.p|Nanoce1779_2|590852|organism=Nannochloropsis oceanica|type=mRNA|length=766bp
GGAGGAGAAGGAGGAAGAGAAGGAGGCGGAGGAGGAAAAGGGGAAGGGGG
AGGAAGGAGCAGGGAGATGGCGGCGCTGCAAGCGATGAATCTGCGGTTGT
ATGGGGAGAATGAGAGTTTAAGGGCAGCGATGTTGAAAATGGCGGGAACA
ACCAGCGGTGGTAGCAGCAGCATTAATTGCAGCTGTACCAAAAGCAGCAA
ATATAGCCCTAATAAAAATCAGCAGGACGGGGAGGAAAAGCCAAAGGAGG
CAAGACGGCGGATCAAGGTGCTGGAGGAGGAGAAGGCAAAGTTGCTGCTT
CAGATTGCAGAAATGGGAGAGATAGCAATGAAGTTGACTAAGAGGGAAGA
AAGCCTCGCACAGCTCCGGGGGGTGGTGGGAGCAAAGGAGGACGCTTTGG
TGGCGTGTAAGGCGATGTGTGAGCGATTGGAAGGGGAGAAGGAAGCTTTG
ACTCGAGAGGTTAAGGGATTAAGGCACAGATTGACGACATTGGAGAAGGA
GGTGCTGGGCCTGCGGGGCACCAAACGACGGCGGCCCTCCTCCTCCTCCT
CTTCTTGCACTGTGCAGCAGGAGCAGCAGAAGGAGCAGGAGCAGCAGGAC
CCAAGGGATGACCTTGACGACCCCTTCAATCCGCCCCCCTTCTTCTCCCT
GTCATCTTCCTCTTCCTCGTCCCCGTCCTCTTTTCCTTCCAAGTCCCCCA
CCTTCCCCACGTCCTCCGCTGCAGGAGCAGCGAAAGAGGATGCAGCAGCA
GCAGCAGCAGCATTGG

protein sequence of jgi.p|Nanoce1779_2|590852

>mRNA_4932-protein ID=mRNA_4932-protein|Name=jgi.p|Nanoce1779_2|590852|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MAALQAMNLRLYGENESLRAAMLKMAGTTSGGSSSINCSCTKSSKYSPNK
NQQDGEEKPKEARRRIKVLEEEKAKLLLQIAEMGEIAMKLTKREESLAQL
RGVVGAKEDALVACKAMCERLEGEKEALTREVKGLRHRLTTLEKEVLGLR
GTKRRRPSSSSSSCTVQQEQQKEQEQQDPRDDLDDPFNPPPFFSLSSSSS
SSPSSFPSKSPTFPTSSAAGAAKEDAAAAAAAL

mRNA from alignment at scaffold_12:60952..61717+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4932 ID=mRNA_4932|Name=jgi.p|Nanoce1779_2|590852|organism=Nannochloropsis oceanica|type=mRNA|length=766bp|location=Sequence derived from alignment at scaffold_12:60952..61717+ (Nannochloropsis oceanica)
GGAGGAGAAGGAGGAAGAGAAGGAGGCGGAGGAGGAAAAGGGGAAGGGGG
AGGAAGGAGCAGGGAGATGGCGGCGCTGCAAGCGATGAATCTGCGGTTGT
ATGGGGAGAATGAGAGTTTAAGGGCAGCGATGTTGAAAATGGCGGGAACA
ACCAGCGGTGGTAGCAGCAGCATTAATTGCAGCTGTACCAAAAGCAGCAA
ATATAGCCCTAATAAAAATCAGCAGGACGGGGAGGAAAAGCCAAAGGAGG
CAAGACGGCGGATCAAGGTGCTGGAGGAGGAGAAGGCAAAGTTGCTGCTT
CAGATTGCAGAAATGGGAGAGATAGCAATGAAGTTGACTAAGAGGGAAGA
AAGCCTCGCACAGCTCCGGGGGGTGGTGGGAGCAAAGGAGGACGCTTTGG
TGGCGTGTAAGGCGATGTGTGAGCGATTGGAAGGGGAGAAGGAAGCTTTG
ACTCGAGAGGTTAAGGGATTAAGGCACAGATTGACGACATTGGAGAAGGA
GGTGCTGGGCCTGCGGGGCACCAAACGACGGCGGCCCTCCTCCTCCTCCT
CTTCTTGCACTGTGCAGCAGGAGCAGCAGAAGGAGCAGGAGCAGCAGGAC
CCAAGGGATGACCTTGACGACCCCTTCAATCCGCCCCCCTTCTTCTCCCT
GTCATCTTCCTCTTCCTCGTCCCCGTCCTCTTTTCCTTCCAAGTCCCCCA
CCTTCCCCACGTCCTCCGCTGCAGGAGCAGCGAAAGAGGATGCAGCAGCA
GCAGCAGCAGCATTGG

Coding sequence (CDS) from alignment at scaffold_12:60952..61717+

>mRNA_4932 ID=mRNA_4932|Name=jgi.p|Nanoce1779_2|590852|organism=Nannochloropsis oceanica|type=CDS|length=700bp|location=Sequence derived from alignment at scaffold_12:60952..61717+ (Nannochloropsis oceanica)
ATGGCGGCGCTGCAAGCGATGAATCTGCGGTTGTATGGGGAGAATGAGAG
TTTAAGGGCAGCGATGTTGAAAATGGCGGGAACAACCAGCGGTGGTAGCA
GCAGCATTAATTGCAGCTGTACCAAAAGCAGCAAATATAGCCCTAATAAA
AATCAGCAGGACGGGGAGGAAAAGCCAAAGGAGGCAAGACGGCGGATCAA
GGTGCTGGAGGAGGAGAAGGCAAAGTTGCTGCTTCAGATTGCAGAAATGG
GAGAGATAGCAATGAAGTTGACTAAGAGGGAAGAAAGCCTCGCACAGCTC
CGGGGGGTGGTGGGAGCAAAGGAGGACGCTTTGGTGGCGTGTAAGGCGAT
GTGTGAGCGATTGGAAGGGGAGAAGGAAGCTTTGACTCGAGAGGTTAAGG
GATTAAGGCACAGATTGACGACATTGGAGAAGGAGGTGCTGGGCCTGCGG
GGCACCAAACGACGGCGGCCCTCCTCCTCCTCCTCTTCTTGCACTGTGCA
GCAGGAGCAGCAGAAGGAGCAGGAGCAGCAGGACCCAAGGGATGACCTTG
ACGACCCCTTCAATCCGCCCCCCTTCTTCTCCCTGTCATCTTCCTCTTCC
TCGTCCCCGTCCTCTTTTCCTTCCAAGTCCCCCACCTTCCCCACGTCCTC
CGCTGCAGGAGCAGCGAAAGAGGATGCAGCAGCAGCAGCAGCAGCATTGG

Synonyms

Publications