jgi.p|Nanoce1779_2|590851, mRNA_4931 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590851
Unique NamemRNA_4931
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1366
Alignment locationscaffold_12:58316..59681 -

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Properties
Property NameValue
TranscriptId590937
TrackFilteredModels2
ProteinId590851
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:58316..59681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590851gene_4931Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590851mRNA_4931-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4931CDS_4931Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4931 ID=mRNA_4931|Name=jgi.p|Nanoce1779_2|590851|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp
CACCCACTCTCCCCCGCTCCTCCCCTCCTTCGAAGCATTTCCGCAGCCAC
ATACTTCCTATTTGCTTCCAAGGCCCGCAGCAAACGTTCTTCCGCCGCCT
GTAGCTGGCAAGCAAGGGTAATCATGTCTTCTTTCATCCGTCTCTGTTCC
TCCTCCGATGCCTCACAATTGGCTTCAGCCACCGCACGCGCCGCCTGAGC
CTCTCGCAATTCCTTCTCCTCTCTCTCCCTCCTGCCTCTTGCTGCTATAC
ACCTCTCTTTCCTCATCCGTCTCTGTTCCTCCTCCGCTGCCTCGCACCTG
GCTTCGGCCACTGCACGCGCCGCCTGAGCCAGACGGAGCTCCTCCTCCTC
CCCTTGCCTTTTCGCTTCTTCCTCCTTCTGCCGCTGCACACACCGCAGGC
AATTTGACCCCCTCAACGAGGACGAGGACCAACACGGAAGGGGGGAAGGG
CCCACGAACTCCTCCACCACCCGCAGAGAAAGAGGGGTGAAATGCCATAC
GGCGGCATCCAGCCTTCTGGCCTGTGCCTCATAAAAATGAATCGCGTCCA
AGTACTCCTGCATCGCTCCCACTAATTCCTGGTCCTCTTTCCTCCCTCTC
TCCCCCCCTGCCTCCTTCCTGGTGGTCTCCTCGGAGTCCTCCCCCTTCTT
GCTCTCGATGACTAGGCTCCGCAACAACTTCCTCACCATCGCCATATCCT
CCCGCTGCACAACGCTGCCGCAGTTTTTGCTGTTGTTGTTGCTGTTGTCG
CTGCTGCTGTTGTCGCTGATGCCGTTGCTGCTGCTGGTACAATTTTCTTG
CATCGCCGCCATGGTCGTTACCACCATCTCTCTTGTCCCCGCTGGGCCAG
CCGCTGCTGCTGCTCTTGCTGCTGCTGCTGCTGGAAAGGAAGAATTGAAA
GAGGAGGAAGAAGCGAGGGAGGACGTGGAGCAGGGCGCCTCTCTACAGCA
CGCACAAGGAGAGAAGGAGGAATGGGAGGTGGAGCAACGGTTTGCATTCA
TAGTCAGCTGCTCCCTCTCCTTCAGCCACCCTTTTTTTTCCTTTTCCAAC
TCCCGCACTTCTCTCCGGACCTGCAGCAGCTGGCACTCACTTCTCTTCAA
TTTCTCCGACACACACAACAGCCTTCCAGCTAGCTCCCGCTCTAGACCCC
CTCCTTTTCCTCCTATCCCTCTTCCCTCTTCACTGCTGCTGCTACTGCTG
CCCAAGCTGCTGACGGTTTGCACCGAGTGCCGTCGTTGCTCCTCCTGCTC
CTGAGAAGCAGCCCCAGAAGTAGCGGCAGCGGCAGCAGCAGCAGCAGCAG
CAGCAGTCGCCGCATAAGAAAAAGATGAAAACCTCTCACTTAGCTCGTGG
CATTGCCCGGAGAGAT
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protein sequence of jgi.p|Nanoce1779_2|590851

>mRNA_4931-protein ID=mRNA_4931-protein|Name=jgi.p|Nanoce1779_2|590851|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MTRLRNNFLTIAISSRCTTLPQFLLLLLLLSLLLLSLMPLLLLVQFSCIA
AMVVTTISLVPAGPAAAAALAAAAAGKEELKEEEEAREDVEQGASLQHAQ
GEKEEWEVEQRFAFIVSCSLSFSHPFFSFSNSRTSLRTCSSWHSLLFNFS
DTHNSLPASSRSRPPPFPPIPLPSSLLLLLLPKLLTVCTECRRCSSCS*
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mRNA from alignment at scaffold_12:58316..59681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4931 ID=mRNA_4931|Name=jgi.p|Nanoce1779_2|590851|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp|location=Sequence derived from alignment at scaffold_12:58316..59681- (Nannochloropsis oceanica)
CACCCACTCTCCCCCGCTCCTCCCCTCCTTCGAAGCATTTCCGCAGCCAC
ATACTTCCTATTTGCTTCCAAGGCCCGCAGCAAACGTTCTTCCGCCGCCT
GTAGCTGGCAAGCAAGGGTAATCATGTCTTCTTTCATCCGTCTCTGTTCC
TCCTCCGATGCCTCACAATTGGCTTCAGCCACCGCACGCGCCGCCTGAGC
CTCTCGCAATTCCTTCTCCTCTCTCTCCCTCCTGCCTCTTGCTGCTATAC
ACCTCTCTTTCCTCATCCGTCTCTGTTCCTCCTCCGCTGCCTCGCACCTG
GCTTCGGCCACTGCACGCGCCGCCTGAGCCAGACGGAGCTCCTCCTCCTC
CCCTTGCCTTTTCGCTTCTTCCTCCTTCTGCCGCTGCACACACCGCAGGC
AATTTGACCCCCTCAACGAGGACGAGGACCAACACGGAAGGGGGGAAGGG
CCCACGAACTCCTCCACCACCCGCAGAGAAAGAGGGGTGAAATGCCATAC
GGCGGCATCCAGCCTTCTGGCCTGTGCCTCATAAAAATGAATCGCGTCCA
AGTACTCCTGCATCGCTCCCACTAATTCCTGGTCCTCTTTCCTCCCTCTC
TCCCCCCCTGCCTCCTTCCTGGTGGTCTCCTCGGAGTCCTCCCCCTTCTT
GCTCTCGATGACTAGGCTCCGCAACAACTTCCTCACCATCGCCATATCCT
CCCGCTGCACAACGCTGCCGCAGTTTTTGCTGTTGTTGTTGCTGTTGTCG
CTGCTGCTGTTGTCGCTGATGCCGTTGCTGCTGCTGGTACAATTTTCTTG
CATCGCCGCCATGGTCGTTACCACCATCTCTCTTGTCCCCGCTGGGCCAG
CCGCTGCTGCTGCTCTTGCTGCTGCTGCTGCTGGAAAGGAAGAATTGAAA
GAGGAGGAAGAAGCGAGGGAGGACGTGGAGCAGGGCGCCTCTCTACAGCA
CGCACAAGGAGAGAAGGAGGAATGGGAGGTGGAGCAACGGTTTGCATTCA
TAGTCAGCTGCTCCCTCTCCTTCAGCCACCCTTTTTTTTCCTTTTCCAAC
TCCCGCACTTCTCTCCGGACCTGCAGCAGCTGGCACTCACTTCTCTTCAA
TTTCTCCGACACACACAACAGCCTTCCAGCTAGCTCCCGCTCTAGACCCC
CTCCTTTTCCTCCTATCCCTCTTCCCTCTTCACTGCTGCTGCTACTGCTG
CCCAAGCTGCTGACGGTTTGCACCGAGTGCCGTCGTTGCTCCTCCTGCTC
CTGAGAAGCAGCCCCAGAAGTAGCGGCAGCGGCAGCAGCAGCAGCAGCAG
CAGCAGTCGCCGCATAAGAAAAAGATGAAAACCTCTCACTTAGCTCGTGG
CATTGCCCGGAGAGAT
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Coding sequence (CDS) from alignment at scaffold_12:58316..59681-

>mRNA_4931 ID=mRNA_4931|Name=jgi.p|Nanoce1779_2|590851|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_12:58316..59681- (Nannochloropsis oceanica)
ATGACTAGGCTCCGCAACAACTTCCTCACCATCGCCATATCCTCCCGCTG
CACAACGCTGCCGCAGTTTTTGCTGTTGTTGTTGCTGTTGTCGCTGCTGC
TGTTGTCGCTGATGCCGTTGCTGCTGCTGGTACAATTTTCTTGCATCGCC
GCCATGGTCGTTACCACCATCTCTCTTGTCCCCGCTGGGCCAGCCGCTGC
TGCTGCTCTTGCTGCTGCTGCTGCTGGAAAGGAAGAATTGAAAGAGGAGG
AAGAAGCGAGGGAGGACGTGGAGCAGGGCGCCTCTCTACAGCACGCACAA
GGAGAGAAGGAGGAATGGGAGGTGGAGCAACGGTTTGCATTCATAGTCAG
CTGCTCCCTCTCCTTCAGCCACCCTTTTTTTTCCTTTTCCAACTCCCGCA
CTTCTCTCCGGACCTGCAGCAGCTGGCACTCACTTCTCTTCAATTTCTCC
GACACACACAACAGCCTTCCAGCTAGCTCCCGCTCTAGACCCCCTCCTTT
TCCTCCTATCCCTCTTCCCTCTTCACTGCTGCTGCTACTGCTGCCCAAGC
TGCTGACGGTTTGCACCGAGTGCCGTCGTTGCTCCTCCTGCTCCTGA
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Synonyms
Publications