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Properties
| Property Name | Value |
|---|
| TranscriptId | 590934 |
| Track | FilteredModels2 |
| ProteinId | 590848 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:55510..57151 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4930 ID=mRNA_4930|Name=jgi.p|Nanoce1779_2|590848|organism=Nannochloropsis oceanica|type=mRNA|length=1642bp
GGACGCGCTGCTGGTGCTGGCTGGTCCTCTCTCCCCTCCTCCACTCTTCC
TCTTTGAGGGAGGAGGAGGAAGGGGAGGAGGCCCGGGTACAAGACGTGGG
TAAGGCCGACGTCGTCAGGGTCAACGAGGCCAAGGCTGCCTCCAACCGCC
CGACTTTTTCCTTCAACCCCTCCTCCTCTTCCTTCTCCTGCTCTTCCTGT
CTCTGTTCCTGCTCCTGCCTCTCCTGCTCCTCGAGGCGTTCCTTTAGTCG
CCGCACCTCCTCCTTCAAGCCCTCCTCCACCACCCTTGCCTGTCTCACTT
CCTCCCGCAGCCTCTCCTCCTCTTCTCCCTCCTTCTCAAGGGCCCTCACG
ACCTGCCGTTGCAACTCTTCTCTTGATTCACCCTCCACCTCTCGCGCCTG
GCGTGTCCATAGTGCATGTTCAGTCAATCGCCGTACTTCCTCCCTCAAGC
CCTCCTCCACCTCCTGCGCCTGCTCGGTGCACAAAGCATGCTCCCTGAAT
AGATACGAGACTTGCGTGTGAATGCGCCGCAATTGCTTCTCGTACCTTGC
CATTAGACTCACGTACTGTCCCAGCTCTTTCTCGGCATCCCCCAGCTCGA
GGAGGATGGTGTGGAGTTCGTGGGCATCTTGGTGGAAGGAGTGAGGGAGG
GAGGAGGAGGCAGATGACGAGGAGGAGGAAGATTGGCTTTCGAGCAGTCG
GACAAGGAGCTCTAGTCCCTGGTCAGCGAGGCAGGGTGTGGAAGATGTGG
ATGAAACGGAGAGAGCGAGAGAAGACGAATCGTCGTCGTCGTTGCTGCTG
TTGCCGTCACTGCATTCCATCACCTGCGTTCTCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGTTGCTGCCCCCTCTCCACCGTTTCCTTTTTACCCTGTT
CATCCTTCTCCAGCTCCATTCTCTTTAAAGTCTCCTGCATCACCATCAAT
GCAGTCCGCAGTTCCTGAGCTTCAGCTTGGGCGGCTTTCGCTGCACTCGA
TTCTGCGGCACGCGCCTCTCGTTCCTTACCCCTCGCGTCCTCCAGCTGCT
CGCACACATGTACGATGAACCCTTTAGCGTCCCGGAGCTCCATCATCGCT
TCCTCCGTCCCATGGTGTGTCTCGCTTAGCTCCGCTTGGGTATGTCCGAG
CAGCTCTTTGAGGTCCATGACTTCTTCTTCGAGCCTTTGCCTTTCCCAGT
CGGATTCTTCCTTTTCTTTCTTGAAGGCCCGATTTTCTTCCCCCAACAAG
GTAATGAGCTCAGAAGAGACGGCGTTTGTCCCCGACGACGATGCAGACGA
GGAGGAGGAGACGAACGAGCGATTGGACGACGTGACATTGCGTGGGGCAG
GCATACCAGGAGGAGGCGGTGGAGAGAGCGTGGAAGGCGAATGATCATCG
TGTCGCTTCTTGGGTTTCCAGTACTGTTGCCACATCTGCATGCTGCTATT
ACTCCTGCTGTTACATTTCCTTTCCTCATCCTCCATGGCCGCTGGGGCTG
CGGGCGGCGGCAGGCAGGATGGGGACGTCCAAAAGGAGGGGCCGCGTTTT
CGCCGCCACTCGCTCAAAATGTGATCGCGCCGTGCTGGCTGGGATGATGA
TGCTGAAGCGCGGTGGTAGTGGAGATTGGTGCGTAAGCCTGT back to topprotein sequence of jgi.p|Nanoce1779_2|590848 >mRNA_4930-protein ID=mRNA_4930-protein|Name=jgi.p|Nanoce1779_2|590848|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MSEQLFEVHDFFFEPLPFPVGFFLFFLEGPIFFPQQGNELRRDGVCPRRR
CRRGGGDERAIGRRDIAWGRHTRRRRWRERGRRMIIVSLLGFPVLLPHLH
AAITPAVTFPFLILHGRWGCGRRQAGWGRPKGGAAFSPPLAQNVIAPCWL
G* back to topmRNA from alignment at scaffold_12:55510..57151- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4930 ID=mRNA_4930|Name=jgi.p|Nanoce1779_2|590848|organism=Nannochloropsis oceanica|type=mRNA|length=1642bp|location=Sequence derived from alignment at scaffold_12:55510..57151- (Nannochloropsis oceanica)
GGACGCGCTGCTGGTGCTGGCTGGTCCTCTCTCCCCTCCTCCACTCTTCC
TCTTTGAGGGAGGAGGAGGAAGGGGAGGAGGCCCGGGTACAAGACGTGGG
TAAGGCCGACGTCGTCAGGGTCAACGAGGCCAAGGCTGCCTCCAACCGCC
CGACTTTTTCCTTCAACCCCTCCTCCTCTTCCTTCTCCTGCTCTTCCTGT
CTCTGTTCCTGCTCCTGCCTCTCCTGCTCCTCGAGGCGTTCCTTTAGTCG
CCGCACCTCCTCCTTCAAGCCCTCCTCCACCACCCTTGCCTGTCTCACTT
CCTCCCGCAGCCTCTCCTCCTCTTCTCCCTCCTTCTCAAGGGCCCTCACG
ACCTGCCGTTGCAACTCTTCTCTTGATTCACCCTCCACCTCTCGCGCCTG
GCGTGTCCATAGTGCATGTTCAGTCAATCGCCGTACTTCCTCCCTCAAGC
CCTCCTCCACCTCCTGCGCCTGCTCGGTGCACAAAGCATGCTCCCTGAAT
AGATACGAGACTTGCGTGTGAATGCGCCGCAATTGCTTCTCGTACCTTGC
CATTAGACTCACGTACTGTCCCAGCTCTTTCTCGGCATCCCCCAGCTCGA
GGAGGATGGTGTGGAGTTCGTGGGCATCTTGGTGGAAGGAGTGAGGGAGG
GAGGAGGAGGCAGATGACGAGGAGGAGGAAGATTGGCTTTCGAGCAGTCG
GACAAGGAGCTCTAGTCCCTGGTCAGCGAGGCAGGGTGTGGAAGATGTGG
ATGAAACGGAGAGAGCGAGAGAAGACGAATCGTCGTCGTCGTTGCTGCTG
TTGCCGTCACTGCATTCCATCACCTGCGTTCTCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGTTGCTGCCCCCTCTCCACCGTTTCCTTTTTACCCTGTT
CATCCTTCTCCAGCTCCATTCTCTTTAAAGTCTCCTGCATCACCATCAAT
GCAGTCCGCAGTTCCTGAGCTTCAGCTTGGGCGGCTTTCGCTGCACTCGA
TTCTGCGGCACGCGCCTCTCGTTCCTTACCCCTCGCGTCCTCCAGCTGCT
CGCACACATGTACGATGAACCCTTTAGCGTCCCGGAGCTCCATCATCGCT
TCCTCCGTCCCATGGTGTGTCTCGCTTAGCTCCGCTTGGGTATGTCCGAG
CAGCTCTTTGAGGTCCATGACTTCTTCTTCGAGCCTTTGCCTTTCCCAGT
CGGATTCTTCCTTTTCTTTCTTGAAGGCCCGATTTTCTTCCCCCAACAAG
GTAATGAGCTCAGAAGAGACGGCGTTTGTCCCCGACGACGATGCAGACGA
GGAGGAGGAGACGAACGAGCGATTGGACGACGTGACATTGCGTGGGGCAG
GCATACCAGGAGGAGGCGGTGGAGAGAGCGTGGAAGGCGAATGATCATCG
TGTCGCTTCTTGGGTTTCCAGTACTGTTGCCACATCTGCATGCTGCTATT
ACTCCTGCTGTTACATTTCCTTTCCTCATCCTCCATGGCCGCTGGGGCTG
CGGGCGGCGGCAGGCAGGATGGGGACGTCCAAAAGGAGGGGCCGCGTTTT
CGCCGCCACTCGCTCAAAATGTGATCGCGCCGTGCTGGCTGGGATGATGA
TGCTGAAGCGCGGTGGTAGTGGAGATTGGTGCGTAAGCCTGT back to topCoding sequence (CDS) from alignment at scaffold_12:55510..57151- >mRNA_4930 ID=mRNA_4930|Name=jgi.p|Nanoce1779_2|590848|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_12:55510..57151- (Nannochloropsis oceanica)
ATGTCCGAGCAGCTCTTTGAGGTCCATGACTTCTTCTTCGAGCCTTTGCC
TTTCCCAGTCGGATTCTTCCTTTTCTTTCTTGAAGGCCCGATTTTCTTCC
CCCAACAAGGTAATGAGCTCAGAAGAGACGGCGTTTGTCCCCGACGACGA
TGCAGACGAGGAGGAGGAGACGAACGAGCGATTGGACGACGTGACATTGC
GTGGGGCAGGCATACCAGGAGGAGGCGGTGGAGAGAGCGTGGAAGGCGAA
TGATCATCGTGTCGCTTCTTGGGTTTCCAGTACTGTTGCCACATCTGCAT
GCTGCTATTACTCCTGCTGTTACATTTCCTTTCCTCATCCTCCATGGCCG
CTGGGGCTGCGGGCGGCGGCAGGCAGGATGGGGACGTCCAAAAGGAGGGG
CCGCGTTTTCGCCGCCACTCGCTCAAAATGTGATCGCGCCGTGCTGGCTG
GGATGA back to top
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