Properties
| Property Name | Value |
|---|
| TranscriptId | 46887 |
| Track | FilteredModels2 |
| ProteinId | 46801 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_12 | supercontig | scaffold_12:51459..53724 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4928 ID=mRNA_4928|Name=jgi.p|Nanoce1779_2|46801|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
CCCACGAGTACGTATAACCGACGGCTCGAACAAATAACGCTCTGAGCACC
CCTCCCACCTCTTCTGTCGATCCAAGCTCTACAGCCACCGGAGACAGCGC
GAGCGAAATCATGCGCACCTGGTCATCCCTCACCCTCCTGGTCGCCACCG
CTGCACCCACCCTTCACTCCACTCGCGCTGCTTGCGATGTGCCATCCCAG
GACGTCGGCTGCATGTTTACGCAAGACATTATTGCCCCAGAGGGATCGTA
TAATTCTCTGACCCATCAAGTGGCCTACTGCAAAATGCAGGGCTACGACA
CTGTTTCCCGTCAGACATCGCAGGGACCCTCCGTTTTCACCTCTGGCCTA
GTCAAGATTGGGGTGGGACTGGCCCATAATCAATTCGGCTCGCGCACGCA
CCCGTCCTGGATGGATCTGCCGGAGGGAGCGGCGGCGTGCGGAATGTGTT
TGGAGGTGACCAAGGTCTCGAACATGCCCGAACTATCCGATGATCTCACA
TCGTGGAACTACGGCAAGAACGTCAGCGTTCCCTTCCTTGCCATGGTGTT
TGATCAATGCACAGACCCCATCTGCGACCAAACAGGCTTCCTTGACTTCG
ACATCTACAACGAGCTGCAGCCCGTGACGAAGGGCAATCCCCGTGTGATG
GAATGGCGAGCCGTCGACTGCCCGGTAGGCGATGAGCATAAGTTGGAGTA
TTTAATGTGCACGCCTGGCACATGTAACGCGGAGGATCCCCCTGATGTCC
CTCGGTGGGGCGCTCTGTTCAACCCTGACTTCTTCGCTGTCTTTGTCCGC
AACCAGCGCCTGCCCATCGTCAAGGTGGAGATGGAGGACCCCAGCACGGT
GATGAGGGAGGAAAGGAGAGAGGGAGAGAGGACAGCCACATTTTGACTGA
CAACAATATGCTGACCGTGAAGCTCTCCCTCCATTCCTCCTTCCCTCCCT
TCCTCGCTCCCTCCCTAGGGCGCCTACCGAGACATGC back to topprotein sequence of jgi.p|Nanoce1779_2|46801 >mRNA_4928-protein ID=mRNA_4928-protein|Name=jgi.p|Nanoce1779_2|46801|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MRTWSSLTLLVATAAPTLHSTRAACDVPSQDVGCMFTQDIIAPEGSYNSL
THQVAYCKMQGYDTVSRQTSQGPSVFTSGLVKIGVGLAHNQFGSRTHPSW
MDLPEGAAACGMCLEVTKVSNMPELSDDLTSWNYGKNVSVPFLAMVFDQC
TDPICDQTGFLDFDIYNELQPVTKGNPRVMEWRAVDCPVGDEHKLEYLMC
TPGTCNAEDPPDVPRWGALFNPDFFAVFVRNQRLPIVKVEMEDPSTVMRE
ERREGERTATF* back to topmRNA from alignment at scaffold_12:51459..53724+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4928 ID=mRNA_4928|Name=jgi.p|Nanoce1779_2|46801|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp|location=Sequence derived from alignment at scaffold_12:51459..53724+ (Nannochloropsis oceanica)
CCCACGAGTACGTATAACCGACGGCTCGAACAAATAACGCTCTGGTGGGT
GGCTAGAACTTTTTTGTTATCTACTGTCGCGCAAAACACTTACCATAGAT
GCAGCGTATGCAATTACAAAGATGATAGAATACTTGTACTGGCTATTTAT
GAGCAAGTTGTGGTTTTCGCAGGGCACCTGGAAAAAAAGTCGAGATTCGC
AACACGCAACCCGATATATACTCCGTTTATACCACAGGCCTAAGCCATGG
ACCTTATCTCGGTGCGAAAGACGAAAATATCTATGGCGACTTCTTAGTTG
TAGTCCAATTTCCCCCCCTTCCCTTCCCTGGGGCGACCTCTATTCCAATG
CGATTCTCACACTACGAGGACACATACCAACCCACAGAGCACCCCTCCCA
CCTCTTCTGTCGATCCAAGCTCTACAGCCACCGGAGACAGCGCGAGCGAA
ATCATGCGCACCTGGTCATCCCTCACCCTCCTGGTCGCCACCGCTGCACC
CACCCTTCAGTACGTTACCCTATCCGCACCCCCCCCGTATGCTTCAAGCC
ACTCAAATCGCTTCCACACGATTTTATTTCGCCACGCGTGGTCACACACA
CGCACAGCTCCACTCGCGCTGCTTGCGATGTGCCATCCCAGGACGTCGGC
TGCATGTTTACGCAAGACATTATTGCCCCAGAGGGATCGTATAATTCTCT
GACCCATCAAGTGGCCTACTGCAAAATGCAGGGTGGGTGTTCGCAGAGGA
AGGGAAGGAGGGAGGGAGGAAAGGAGAGAGGGCAGGAGAAAGGGAAAGCT
TCAGTGACGGACAAAGAGTGAGTGAAGGAGGCTCAGATGCAAGAAATTGT
GATATGTAGGACCAGAAGAGAATTTCCAGCGTCCGAGATGACGCGGAAGC
ACACCAACCACCAACCAAAGCCTCATTTACCCCTCCTTCCCTCCCTTCTT
CCCTTTCTCCCTCCCGTAGGCTACGACACTGTTTCCCGTCAGACATCGCA
GGGACCCTCCGTTTTCACCTCTGGCCTAGTCAAGATTGGGGTGGGACTGG
CCCATAATCAATTCGGCTCGCGCACGCACCCGTCCTGGATGGATCTGCCG
GAGGGAGCGGCGGCGTGCGGAATGTGTTTGGAGGTGAGGGAGAGAGGGAG
GGAGAGAGAAAGAAAGGAAGCGGAGGTAGAGAGTCCTGGATACCTGCAGA
AAAGGATATTGATGTTAACGTAGCAGTATGCGTAAACACAGCATCAAAGA
TAAAGACTCCTTCCCCCTCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCC
TCCCTTCCTCCCGCCCTCCCTCCCTCCATCCCTCCCTCCCAGGTGACCAA
GGTCTCGAACATGCCCGAACTATCCGATGATCTCACATCGTGGAACTACG
GCAAGAACGTCAGCGTTCCCTTCCTTGCCATGGTGTTTGATCAATGCACA
GACCCCATCTGCGACCAAACAGGTGAAGCCCCCTCCTTCCCTCCCTCCTC
CTCCCTCCCTCCTCCTCCCCTGCTCCCTTCCTCCCTTTCTAATCAATAAA
AAACTCTTGTTTACTATCGGCTCCGCACTCGTGATCTTCCCTCCCTCCCC
CCCTCCCTAGGCTTCCTTGACTTCGACATCTACAACGAGCTGCAGCCCGT
GACGAAGGGCAATCCCCGTGTGATGGAATGGCGAGCCGTCGACTGCCCGG
TAGGCGATGAGCATAAGTTGGAGTATTTAATGTGCACGCCTGGCACATGT
AACGCGGAGGATCCCCCTGATGTAAGGAGGGAGGGAGGGAGGGAGGGGTC
TCGAGTTTCCGGTGGGAGAAAGGCGTGAGACCTGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGGTCAGGCGGAGATGGATCTCCAACCAATGTACAT
ATGGCTTCTTTCTTCCCTCCAACCCTCCCTTCCTCATTATTGGTGTGAAC
TCATGTTCACGCTCCTCCCTCCCTCCCTTCCTCCCTCACTCTCTCCCTTC
CTCTCTCCCTTCCTTCCTTCCTCAGGTCCCTCGGTGGGGCGCTCTGTTCA
ACCCTGACTTCTTCGCTGTCTTTGTCCGCAACCAGCGCCTGCCCATCGTC
AAGGTGGAGATGGAGGACCCCAGCACGGTGATGAGGGAGGAAAGGAGAGA
GGGAGAGAGGACAGCCACATTTTGACTGACAACAATATGCTGACCGTGAA
GCTCTCCCTCCATTCCTCCTTCCCTCCCTTCCTCGCTCCCTCCCTAGGGC
GCCTACCGAGACATGC back to topCoding sequence (CDS) from alignment at scaffold_12:51459..53724+ >mRNA_4928 ID=mRNA_4928|Name=jgi.p|Nanoce1779_2|46801|organism=Nannochloropsis oceanica|type=CDS|length=4716bp|location=Sequence derived from alignment at scaffold_12:51459..53724+ (Nannochloropsis oceanica)
ATGCGCACCTGGTCATCCCTCACCCTCCTGGTCGCCACCGCTGCACCCAC
CCTTCACTCCACTCGCGCTGCTTGCGATGTGCCATCCCAGGACGTCGGCT
GCATGTTTACGCAAGACATTATTGCCCCAGAGGGATCGTATAATTCTCTG
ACCCATCAAGTGGCCTACTGCAAAATGCAGGGCTACGACACTGTTTCCCG
TCAGACATCGCAGGGACCCTCCGTTTTCACCTCTGGCCTAGTCAAGATTG
GGGTGGGACTGGCCCATAATCAATTCGGCTCGCGCACGCACCCGTCCTGG
ATGGATCTGCCGGAGGGAGCGGCGGCGTGCGGAATGTGTTTGGAGGTGAC
CAAGGTCTCGAACATGCCCGAACTATCCGATGATCTCACATCGTGGAACT
ACGGCAAGAACGTCAGCGTTCCCTTCCTTGCCATGGTGTTTGATCAATGC
ACAGACCCCATCTGCGACCAAACAGGCTTCCTTGACTTCGACATCTACAA
CGAGCTGCAGCCCGTGACGAAGGGCAATCCCCGTGTGATGGAATGGCGAG
CCGTCGACTGCCCGGTAGGCGATGAGCATAAGTTGGAGTATTTAATGTGC
ACGCCTGGCACATGTAACGCGGAGGATCCCCCTGATGTCCCTCGGTGGGG
CGCTCTGTTCAACCCTGACTTCTTCGCTGTCTTTGTCCGCAACCAGCGCC
TGCCCATCGTCAAGGTGGAGATGGAGGACCCCAGCACGGTGATGAGGGAG
GAAAGGAGAGAGGGAGAGAGGACAGCCACATTTTGAATGCGCACCTGGTC
ATCCCTCACCCTCCTGGTCGCCACCGCTGCACCCACCCTTCACTCCACTC
GCGCTGCTTGCGATGTGCCATCCCAGGACGTCGGCTGCATGTTTACGCAA
GACATTATTGCCCCAGAGGGATCGTATAATTCTCTGACCCATCAAGTGGC
CTACTGCAAAATGCAGGGCTACGACACTGTTTCCCGTCAGACATCGCAGG
GACCCTCCGTTTTCACCTCTGGCCTAGTCAAGATTGGGGTGGGACTGGCC
CATAATCAATTCGGCTCGCGCACGCACCCGTCCTGGATGGATCTGCCGGA
GGGAGCGGCGGCGTGCGGAATGTGTTTGGAGGTGACCAAGGTCTCGAACA
TGCCCGAACTATCCGATGATCTCACATCGTGGAACTACGGCAAGAACGTC
AGCGTTCCCTTCCTTGCCATGGTGTTTGATCAATGCACAGACCCCATCTG
CGACCAAACAGGCTTCCTTGACTTCGACATCTACAACGAGCTGCAGCCCG
TGACGAAGGGCAATCCCCGTGTGATGGAATGGCGAGCCGTCGACTGCCCG
GTAGGCGATGAGCATAAGTTGGAGTATTTAATGTGCACGCCTGGCACATG
TAACGCGGAGGATCCCCCTGATGTCCCTCGGTGGGGCGCTCTGTTCAACC
CTGACTTCTTCGCTGTCTTTGTCCGCAACCAGCGCCTGCCCATCGTCAAG
GTGGAGATGGAGGACCCCAGCACGGTGATGAGGGAGGAAAGGAGAGAGGG
AGAGAGGACAGCCACATTTTGAATGCGCACCTGGTCATCCCTCACCCTCC
TGGTCGCCACCGCTGCACCCACCCTTCACTCCACTCGCGCTGCTTGCGAT
GTGCCATCCCAGGACGTCGGCTGCATGTTTACGCAAGACATTATTGCCCC
AGAGGGATCGTATAATTCTCTGACCCATCAAGTGGCCTACTGCAAAATGC
AGGGCTACGACACTGTTTCCCGTCAGACATCGCAGGGACCCTCCGTTTTC
ACCTCTGGCCTAGTCAAGATTGGGGTGGGACTGGCCCATAATCAATTCGG
CTCGCGCACGCACCCGTCCTGGATGGATCTGCCGGAGGGAGCGGCGGCGT
GCGGAATGTGTTTGGAGGTGACCAAGGTCTCGAACATGCCCGAACTATCC
GATGATCTCACATCGTGGAACTACGGCAAGAACGTCAGCGTTCCCTTCCT
TGCCATGGTGTTTGATCAATGCACAGACCCCATCTGCGACCAAACAGGCT
TCCTTGACTTCGACATCTACAACGAGCTGCAGCCCGTGACGAAGGGCAAT
CCCCGTGTGATGGAATGGCGAGCCGTCGACTGCCCGGTAGGCGATGAGCA
TAAGTTGGAGTATTTAATGTGCACGCCTGGCACATGTAACGCGGAGGATC
CCCCTGATGTCCCTCGGTGGGGCGCTCTGTTCAACCCTGACTTCTTCGCT
GTCTTTGTCCGCAACCAGCGCCTGCCCATCGTCAAGGTGGAGATGGAGGA
CCCCAGCACGGTGATGAGGGAGGAAAGGAGAGAGGGAGAGAGGACAGCCA
CATTTTGAATGCGCACCTGGTCATCCCTCACCCTCCTGGTCGCCACCGCT
GCACCCACCCTTCACTCCACTCGCGCTGCTTGCGATGTGCCATCCCAGGA
CGTCGGCTGCATGTTTACGCAAGACATTATTGCCCCAGAGGGATCGTATA
ATTCTCTGACCCATCAAGTGGCCTACTGCAAAATGCAGGGCTACGACACT
GTTTCCCGTCAGACATCGCAGGGACCCTCCGTTTTCACCTCTGGCCTAGT
CAAGATTGGGGTGGGACTGGCCCATAATCAATTCGGCTCGCGCACGCACC
CGTCCTGGATGGATCTGCCGGAGGGAGCGGCGGCGTGCGGAATGTGTTTG
GAGGTGACCAAGGTCTCGAACATGCCCGAACTATCCGATGATCTCACATC
GTGGAACTACGGCAAGAACGTCAGCGTTCCCTTCCTTGCCATGGTGTTTG
ATCAATGCACAGACCCCATCTGCGACCAAACAGGCTTCCTTGACTTCGAC
ATCTACAACGAGCTGCAGCCCGTGACGAAGGGCAATCCCCGTGTGATGGA
ATGGCGAGCCGTCGACTGCCCGGTAGGCGATGAGCATAAGTTGGAGTATT
TAATGTGCACGCCTGGCACATGTAACGCGGAGGATCCCCCTGATGTCCCT
CGGTGGGGCGCTCTGTTCAACCCTGACTTCTTCGCTGTCTTTGTCCGCAA
CCAGCGCCTGCCCATCGTCAAGGTGGAGATGGAGGACCCCAGCACGGTGA
TGAGGGAGGAAAGGAGAGAGGGAGAGAGGACAGCCACATTTTGAATGCGC
ACCTGGTCATCCCTCACCCTCCTGGTCGCCACCGCTGCACCCACCCTTCA
CTCCACTCGCGCTGCTTGCGATGTGCCATCCCAGGACGTCGGCTGCATGT
TTACGCAAGACATTATTGCCCCAGAGGGATCGTATAATTCTCTGACCCAT
CAAGTGGCCTACTGCAAAATGCAGGGCTACGACACTGTTTCCCGTCAGAC
ATCGCAGGGACCCTCCGTTTTCACCTCTGGCCTAGTCAAGATTGGGGTGG
GACTGGCCCATAATCAATTCGGCTCGCGCACGCACCCGTCCTGGATGGAT
CTGCCGGAGGGAGCGGCGGCGTGCGGAATGTGTTTGGAGGTGACCAAGGT
CTCGAACATGCCCGAACTATCCGATGATCTCACATCGTGGAACTACGGCA
AGAACGTCAGCGTTCCCTTCCTTGCCATGGTGTTTGATCAATGCACAGAC
CCCATCTGCGACCAAACAGGCTTCCTTGACTTCGACATCTACAACGAGCT
GCAGCCCGTGACGAAGGGCAATCCCCGTGTGATGGAATGGCGAGCCGTCG
ACTGCCCGGTAGGCGATGAGCATAAGTTGGAGTATTTAATGTGCACGCCT
GGCACATGTAACGCGGAGGATCCCCCTGATGTCCCTCGGTGGGGCGCTCT
GTTCAACCCTGACTTCTTCGCTGTCTTTGTCCGCAACCAGCGCCTGCCCA
TCGTCAAGGTGGAGATGGAGGACCCCAGCACGGTGATGAGGGAGGAAAGG
AGAGAGGGAGAGAGGACAGCCACATTTTGAATGCGCACCTGGTCATCCCT
CACCCTCCTGGTCGCCACCGCTGCACCCACCCTTCACTCCACTCGCGCTG
CTTGCGATGTGCCATCCCAGGACGTCGGCTGCATGTTTACGCAAGACATT
ATTGCCCCAGAGGGATCGTATAATTCTCTGACCCATCAAGTGGCCTACTG
CAAAATGCAGGGCTACGACACTGTTTCCCGTCAGACATCGCAGGGACCCT
CCGTTTTCACCTCTGGCCTAGTCAAGATTGGGGTGGGACTGGCCCATAAT
CAATTCGGCTCGCGCACGCACCCGTCCTGGATGGATCTGCCGGAGGGAGC
GGCGGCGTGCGGAATGTGTTTGGAGGTGACCAAGGTCTCGAACATGCCCG
AACTATCCGATGATCTCACATCGTGGAACTACGGCAAGAACGTCAGCGTT
CCCTTCCTTGCCATGGTGTTTGATCAATGCACAGACCCCATCTGCGACCA
AACAGGCTTCCTTGACTTCGACATCTACAACGAGCTGCAGCCCGTGACGA
AGGGCAATCCCCGTGTGATGGAATGGCGAGCCGTCGACTGCCCGGTAGGC
GATGAGCATAAGTTGGAGTATTTAATGTGCACGCCTGGCACATGTAACGC
GGAGGATCCCCCTGATGTCCCTCGGTGGGGCGCTCTGTTCAACCCTGACT
TCTTCGCTGTCTTTGTCCGCAACCAGCGCCTGCCCATCGTCAAGGTGGAG
ATGGAGGACCCCAGCACGGTGATGAGGGAGGAAAGGAGAGAGGGAGAGAG
GACAGCCACATTTTGA back to top
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