jgi.p|Nanoce1779_2|590841, mRNA_4926 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590841
Unique Name	mRNA_4926
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1314
Alignment location	scaffold_12:46856..48169 -

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Properties


Property Name	Value
TranscriptId	590927
Track	FilteredModels2
ProteinId	590841

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:46856..48169 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590841	gene_4926	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590841	mRNA_4926-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4926	CDS_4926	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:46856..48169-
coding sequence from alignment at scaffold_12:46856..48169-

mRNA sequence

>mRNA_4926 ID=mRNA_4926|Name=jgi.p|Nanoce1779_2|590841|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp
ATTAGAGCATATACTATAAAAATTGTTCCCTTGTTGGTCCCTTCCCATTT
TATATTTCCTCTCTTTACGCTTGCTTGCAGCCTTCTCTTTAATCCTCTGT
GTTTTGTTTCTTGTTCCCGCTTTCCCAAACTCATTCAACCGTGATTCTGT
TTCAAGTTTTTGTGCGGGAAGGCATGTGTTATCCATTCAAACATAACAAC
ACAATCGTCATTACTCACATGCACAGTGTCACCATCACTACCATTCAACG
ACTCGGCCTACGACAAACTCGCACCCTTCGAAGTTATGTCTCGAGTCCCC
ACACTTTATTTTCTAACACTTTTGTTCGCTTTTCCCCCCCTTTGTCAGCA
GACCTGCCTCTTGATCGGTTGAAGTGGATTTCCCTTTCGGTCGAGCGTCA
GCAGGCGTGCCTTACGTTGCTCCTCTGCTCCGTACTGCAGCTCGTCCTCT
TTCCAGCTGTCAAGTGGGGATTAAAATTCGTACTTGCCTTCTTACTTTAC
TAATTACTGGGTGGTTTTCATCCAGCTTTCGTTTTTTGCTCGTTATTGTA
AGAAATAAAATAATTGGTGCTTTGAATATAAAATGGTGGACTTGATTGGT
TGTTTACACACGTACCCACGCATGCATTGACAAGAGACATGTCTACACAG
AGAAGTAGCCAACTATTTCTCTGTCTTCCGAGCGCACACACATGAGGCGT
ATACAGGGTGATGGGGATCTAAGACTCTTTCATATTCACTGTTCCCATTG
ACTTCGTTGTGCTTTACGAATAAATGTGTATATTTCTATTATTCGCGATC
TCTAAGCCATATTCTTACATATCATGAACTATCAAATTTGCTCGCTATTT
CACACTTTGTATGTAATATTGTATTGTGTTTTGTATTTTACACCCTCCTC
CTCTTCTCCCTTCCCTTTACTTCTCGCAGAAGTTCAACTTCCGCTCCCTA
CCTCCCCTTCTCCCGCCGTTACCACTCCCGGCAGTCCCCCTGCAGCATGC
ACTACAGCCACACTTCGACGATGTGTTCGCTTCTTCAGTCCTTCTTCCCC
TCCTCCTCCTCCTCCAAAATCACACCCCTGCAACCGACCTCCTGTCTTTG
TCCACTGCTGCCGCAAGGGTGTCCCTGGAAGCGAGCCCGCAGTCCCTACT
GCCCATGAGCACTGTGGCGCCGAGATTATATCTAAACTCCTCTGTTGGTG
CGGGTTTAGCTGCGAAATCGGGAGATAGTCCGTTCCTCTTCCCCTTCTTC
CTCTTTTTTCTCCTCCTCCTCCTCCTCCTCCGCCTCCTCCGCCTCCTCCG
CCTCCTCTTCCTCC

protein sequence of jgi.p|Nanoce1779_2|590841

>mRNA_4926-protein ID=mRNA_4926-protein|Name=jgi.p|Nanoce1779_2|590841|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MNYQICSLFHTLYVILYCVLYFTPSSSSPFPLLLAEVQLPLPTSPSPAVT
TPGSPPAACTTATLRRCVRFFSPSSPPPPPPKSHPCNRPPVFVHCCRKGV
PGSEPAVPTAHEHCGAEIISKLLCWCGFSCEIGR*

mRNA from alignment at scaffold_12:46856..48169-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4926 ID=mRNA_4926|Name=jgi.p|Nanoce1779_2|590841|organism=Nannochloropsis oceanica|type=mRNA|length=1314bp|location=Sequence derived from alignment at scaffold_12:46856..48169- (Nannochloropsis oceanica)
ATTAGAGCATATACTATAAAAATTGTTCCCTTGTTGGTCCCTTCCCATTT
TATATTTCCTCTCTTTACGCTTGCTTGCAGCCTTCTCTTTAATCCTCTGT
GTTTTGTTTCTTGTTCCCGCTTTCCCAAACTCATTCAACCGTGATTCTGT
TTCAAGTTTTTGTGCGGGAAGGCATGTGTTATCCATTCAAACATAACAAC
ACAATCGTCATTACTCACATGCACAGTGTCACCATCACTACCATTCAACG
ACTCGGCCTACGACAAACTCGCACCCTTCGAAGTTATGTCTCGAGTCCCC
ACACTTTATTTTCTAACACTTTTGTTCGCTTTTCCCCCCCTTTGTCAGCA
GACCTGCCTCTTGATCGGTTGAAGTGGATTTCCCTTTCGGTCGAGCGTCA
GCAGGCGTGCCTTACGTTGCTCCTCTGCTCCGTACTGCAGCTCGTCCTCT
TTCCAGCTGTCAAGTGGGGATTAAAATTCGTACTTGCCTTCTTACTTTAC
TAATTACTGGGTGGTTTTCATCCAGCTTTCGTTTTTTGCTCGTTATTGTA
AGAAATAAAATAATTGGTGCTTTGAATATAAAATGGTGGACTTGATTGGT
TGTTTACACACGTACCCACGCATGCATTGACAAGAGACATGTCTACACAG
AGAAGTAGCCAACTATTTCTCTGTCTTCCGAGCGCACACACATGAGGCGT
ATACAGGGTGATGGGGATCTAAGACTCTTTCATATTCACTGTTCCCATTG
ACTTCGTTGTGCTTTACGAATAAATGTGTATATTTCTATTATTCGCGATC
TCTAAGCCATATTCTTACATATCATGAACTATCAAATTTGCTCGCTATTT
CACACTTTGTATGTAATATTGTATTGTGTTTTGTATTTTACACCCTCCTC
CTCTTCTCCCTTCCCTTTACTTCTCGCAGAAGTTCAACTTCCGCTCCCTA
CCTCCCCTTCTCCCGCCGTTACCACTCCCGGCAGTCCCCCTGCAGCATGC
ACTACAGCCACACTTCGACGATGTGTTCGCTTCTTCAGTCCTTCTTCCCC
TCCTCCTCCTCCTCCAAAATCACACCCCTGCAACCGACCTCCTGTCTTTG
TCCACTGCTGCCGCAAGGGTGTCCCTGGAAGCGAGCCCGCAGTCCCTACT
GCCCATGAGCACTGTGGCGCCGAGATTATATCTAAACTCCTCTGTTGGTG
CGGGTTTAGCTGCGAAATCGGGAGATAGTCCGTTCCTCTTCCCCTTCTTC
CTCTTTTTTCTCCTCCTCCTCCTCCTCCTCCGCCTCCTCCGCCTCCTCCG
CCTCCTCTTCCTCC

Coding sequence (CDS) from alignment at scaffold_12:46856..48169-

>mRNA_4926 ID=mRNA_4926|Name=jgi.p|Nanoce1779_2|590841|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_12:46856..48169- (Nannochloropsis oceanica)
ATGAACTATCAAATTTGCTCGCTATTTCACACTTTGTATGTAATATTGTA
TTGTGTTTTGTATTTTACACCCTCCTCCTCTTCTCCCTTCCCTTTACTTC
TCGCAGAAGTTCAACTTCCGCTCCCTACCTCCCCTTCTCCCGCCGTTACC
ACTCCCGGCAGTCCCCCTGCAGCATGCACTACAGCCACACTTCGACGATG
TGTTCGCTTCTTCAGTCCTTCTTCCCCTCCTCCTCCTCCTCCAAAATCAC
ACCCCTGCAACCGACCTCCTGTCTTTGTCCACTGCTGCCGCAAGGGTGTC
CCTGGAAGCGAGCCCGCAGTCCCTACTGCCCATGAGCACTGTGGCGCCGA
GATTATATCTAAACTCCTCTGTTGGTGCGGGTTTAGCTGCGAAATCGGGA
GATAG

Synonyms

Publications