jgi.p|Nanoce1779_2|647577, mRNA_4925 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|647577
Unique Name	mRNA_4925
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1372
Alignment location	scaffold_12:43360..45234 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	647663
Track	FilteredModels2
ProteinId	647577

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:43360..45234 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|647577	gene_4925	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|647577	mRNA_4925-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4925	CDS_4925	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:43360..45234+
coding sequence from alignment at scaffold_12:43360..45234+

mRNA sequence

>mRNA_4925 ID=mRNA_4925|Name=jgi.p|Nanoce1779_2|647577|organism=Nannochloropsis oceanica|type=mRNA|length=1372bp
CAGACCACCACACAGGAAAAAGGACGAGCTTTTCGGCAGGCCCGACGAAC
GCCGCAGATAATAGGAACAAGACCCTAGCTCTATCGATATCACCATGCGC
ATCTAAAGGCCAAGCGGCAACGGCGAAGGGGCTGCCCGTGGCCAGCCTTG
TCGATTTTCTCGAGAGAACAGGGTGGCCTTGACACGTGGTAGAACAAGAC
ATCAGTGTGCACTTGACGCGCGGTCAAAAAAGATGGAGAAGACCTACTGC
CTCGGTATGTAGTTGTGGACTTTCTGGTGACCTACATTTTTTTCTTCTCC
AACCGGCCTTCTTACGCAGGAAATTAAAAGGGAGGTCTTCTTCAAAATTG
TATCAGGATACACAGCCCCCCCCATCCTCACCCCCTCCCCCCATCCATCT
TGTCTCATTTATTCCTCCCTCCTTCTCTCCCCCCTAATTTCCTCTGGCAC
AGCGGACTTTGACATCCTTGAAACCCTGGGCTCCGGGTCTTTCTCCACCG
TCTTCCGAGCCCGTCCCCGCTCCTCCCCTTCCCTGCCCATCGTCCTGAAG
GAGACCCGTTCCCTCAGCAGCAGCGCCGTCACCCGGGCTAATGTGGCACG
GGAAGTGGAGATGCTCAAGATTGCAGTCGGCTGCCCGTACATTTCTCGGT
TCTACGCGGCGTTTACGGGCAACGATCATCACTATATGGTGCTTGAGTGT
ATTCCAGGAGGGGATCTCCTCAAGACTGTGCAGAAATGCATGGCCACCAA
GAGCCCCCCGGACGAGGCAACCCTGTGGCGGTACCTTTACGAACTCGGGC
AGGGGGTGGCTTTCCTCCATCGTGCGGGGATCGTTCATCGCGATATTAAA
TGTCAAAATATCATGCTAACAAACACGGGGCACGTGAAATTGATTGACCT
TGGATTGGCAGCACATTTGGTGGAAGGAGAGGAGTTGCAGGAGAGGTGTG
GGACGCCGTTCTACATGGCGGTGGAGATGATTCGAAAGCAGCCATACGAC
CACCGGGTCGATGTATGGAGCGTTGGTTGTGTCCTCTACATGCTGGCTCA
GCTACGACCGGCATTCAATGGCACGACATTGCCGCAGTTGTGTCGGTCGA
TAGTAGATGATGCCCCCCTACCCTTGTGTGGGAAGCGATACAGCCCGTAC
CTGTCGCATTTGATTTTGGGGATGCTGGACAAACGGAGGGAGGCGAGACC
TAGGATGGAGGAGGTGCTATCTCATCCTGTGTTTGCGCACTACCCTCATT
TCCCCCCAACAATTTTCAAGCAGCCGTTTCAGACGGAGGCGATGGCCCTT
GGGCTGGGAAGTTTGGACTTGACAGGGAATACGGGGATGCTGTTGGAATT
CCGAGCAAGTCAATGTTTATGA

protein sequence of jgi.p|Nanoce1779_2|647577

>mRNA_4925-protein ID=mRNA_4925-protein|Name=jgi.p|Nanoce1779_2|647577|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MLKIAVGCPYISRFYAAFTGNDHHYMVLECIPGGDLLKTVQKCMATKSPP
DEATLWRYLYELGQGVAFLHRAGIVHRDIKCQNIMLTNTGHVKLIDLGLA
AHLVEGEELQERCGTPFYMAVEMIRKQPYDHRVDVWSVGCVLYMLAQLRP
AFNGTTLPQLCRSIVDDAPLPLCGKRYSPYLSHLILGMLDKRREARPRME
EVLSHPVFAHYPHFPPTIFKQPFQTEAMALGLGSLDLTGNTGMLLEFRAS
QCL*

mRNA from alignment at scaffold_12:43360..45234+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4925 ID=mRNA_4925|Name=jgi.p|Nanoce1779_2|647577|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp|location=Sequence derived from alignment at scaffold_12:43360..45234+ (Nannochloropsis oceanica)
CAGACCACCACACAGGAAAAAGGACGAGCTTTTCGGCAGGCCCGACGAAC
GCCGCAGATAATAGGAACAAGACCCTAGCTCTATCGATATCACCATGCGC
ATCTAAAGGCCAAGCGGCAACGGCGAAGGGGCTGCCCGTGGCCAGCCTTG
TCGATTTTCTCGAGAGAACAGGGTGGCCTTGACACGTGGTAGAACAAGAC
ATCAGTGTGCACTTGACGCGCGGTCAAAAAAGATGGAGAAGACCTACTGC
CTCGGTATGTAGTTGTGGACTTTCTGGTGACCTACATTTTTTTCTTCTCC
AACCGGCCTTCTTACGCAGGAAATTAAAAGGGAGGTCTTCTTCAAAATTG
TATCAGGATACACAGCCCCCCCCATCCTCACCCCCTCCCCCCATCCATCT
TGTCTCATTTATTCCTCCCTCCTTCTCTCCCCCCTAATTTCCTCTGGCAC
AGCGGACTTTGACATCCTTGAAACCCTGGGCTCCGGGTCTTTCTCCACCG
TCTTCCGAGCCCGTCCCCGCTCCTCCCCTTCCCTGCCCATCGTCCTGAAG
GAGACCCGTTCCCTCAGCAGCAGCGCCGTCACCCGGGCTAATGTGGCACG
GGAAGTGGAGATGCTCAAGATTGCAGTCGGCTGCCCGTACATTTCTCGGT
TCTACGCGGCGTTTACGGGCAACGATCATCACTATATGGTGCTTGAGTGT
ATTCCAGGAGGGGATCTCCTCAAGACTGTGCAGAAATGCATGGCCACCAA
GAGCCCCCCGGACGAGGCAACCCTGTGGCGGTACCTTTACGAACTCGGGC
AGGGGGTGGCTTTCCTCCATCGTGCGGGGATCGTTCATCGCGATATTAAA
TGTCAAAATATCATGCTAACAAACACGGGGCACGTGAAATTGATTGACCT
TGGATTGGCAGCACATTTGGTGGAAGGAGAGGAGTTGCAGGAGAGGTGTG
GGACGCCGTTCTACATGGCGGTGGAGATGATTCGAAAGCAGCCATACGAC
CACCGGGTCGATGTATGGAGCGTTGGTTGTGTCCTCTACATGCTGGCTCA
GCTACGACCGGCATTCAATGGCACGACATTGCCGCAGTTGTGTCGGTCGA
TAGTAGATGATGCCCCCCTACCCTTGTGTGGGAAGCGATACAGCCCGTAC
CTGTCGCATTTGATTTTGGGGATGCTGGACAAACGGAGGGAGGCGAGACC
TAGGATGGAGGAGGTGCTATCTCATCCTGTGTTTGCGCACTACCCTCATT
TCCCCCCAACAATTTTCAAGCAGCCGTTTCAGACGGAGGCGATGGCCCTT
GGGCTGGGAAGTTTGGACTTGACAGGGAATACGGGGATGCTGTTGGAGTT
GGGGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGATTGC
TTGCTGATGGAGGCGGTGCTCCGGGAGGGGTTTGTGTGACTGGTGCAGGT
ACATTGGTGGAGAAGGCGGTGGCTGCGGCGGCGGCAGGCAGAGAAGGAGG
AGGAAGAGGGGTAAGTGGAGCAGGACCAGGACAAGAGCACCATTATGTGC
AGTGCCTGCCCGTCCAGCAGCAGATGCAGCAACATCAGCATAAGCAGCAA
GTCACCGCCTCCTACCCTTTCAATCACCACCAATATCAATATCAACAGCA
TTTCCTACAGCATTTGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGC
AGCAGCAGCAGCTACTTCATCCAACGGCTTTTCCCCCAGGGCCTCTGATG
GGCGATCCTCCCGCGGAAGAAGACGACAACGAAAAGGCAGAGGGAAGAGA
CGACATGTTCAAGGACCTCCCTCCCTCTCTTCCTCTTCTTGCGCTGGCAG
ATTCCGAGCAAGTCAATGTTTATGA

Coding sequence (CDS) from alignment at scaffold_12:43360..45234+

>mRNA_4925 ID=mRNA_4925|Name=jgi.p|Nanoce1779_2|647577|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_12:43360..45234+ (Nannochloropsis oceanica)
ATGCTCAAGATTGCAGTCGGCTGCCCGTACATTTCTCGGTTCTACGCGGC
GTTTACGGGCAACGATCATCACTATATGGTGCTTGAGTGTATTCCAGGAG
GGGATCTCCTCAAGACTGTGCAGAAATGCATGGCCACCAAGAGCCCCCCG
GACGAGGCAACCCTGTGGCGGTACCTTTACGAACTCGGGCAGGGGGTGGC
TTTCCTCCATCGTGCGGGGATCGTTCATCGCGATATTAAATGTCAAAATA
TCATGCTAACAAACACGGGGCACGTGAAATTGATTGACCTTGGATTGGCA
GCACATTTGGTGGAAGGAGAGGAGTTGCAGGAGAGGTGTGGGACGCCGTT
CTACATGGCGGTGGAGATGATTCGAAAGCAGCCATACGACCACCGGGTCG
ATGTATGGAGCGTTGGTTGTGTCCTCTACATGCTGGCTCAGCTACGACCG
GCATTCAATGGCACGACATTGCCGCAGTTGTGTCGGTCGATAGTAGATGA
TGCCCCCCTACCCTTGTGTGGGAAGCGATACAGCCCGTACCTGTCGCATT
TGATTTTGGGGATGCTGGACAAACGGAGGGAGGCGAGACCTAGGATGGAG
GAGGTGCTATCTCATCCTGTGTTTGCGCACTACCCTCATTTCCCCCCAAC
AATTTTCAAGCAGCCGTTTCAGACGGAGGCGATGGCCCTTGGGCTGGGAA
GTTTGGACTTGACAGGGAATACGGGGATGCTGTTGGAATTCCGAGCAAGT
CAATGTTTATGAATGCTCAAGATTGCAGTCGGCTGCCCGTACATTTCTCG
GTTCTACGCGGCGTTTACGGGCAACGATCATCACTATATGGTGCTTGAGT
GTATTCCAGGAGGGGATCTCCTCAAGACTGTGCAGAAATGCATGGCCACC
AAGAGCCCCCCGGACGAGGCAACCCTGTGGCGGTACCTTTACGAACTCGG
GCAGGGGGTGGCTTTCCTCCATCGTGCGGGGATCGTTCATCGCGATATTA
AATGTCAAAATATCATGCTAACAAACACGGGGCACGTGAAATTGATTGAC
CTTGGATTGGCAGCACATTTGGTGGAAGGAGAGGAGTTGCAGGAGAGGTG
TGGGACGCCGTTCTACATGGCGGTGGAGATGATTCGAAAGCAGCCATACG
ACCACCGGGTCGATGTATGGAGCGTTGGTTGTGTCCTCTACATGCTGGCT
CAGCTACGACCGGCATTCAATGGCACGACATTGCCGCAGTTGTGTCGGTC
GATAGTAGATGATGCCCCCCTACCCTTGTGTGGGAAGCGATACAGCCCGT
ACCTGTCGCATTTGATTTTGGGGATGCTGGACAAACGGAGGGAGGCGAGA
CCTAGGATGGAGGAGGTGCTATCTCATCCTGTGTTTGCGCACTACCCTCA
TTTCCCCCCAACAATTTTCAAGCAGCCGTTTCAGACGGAGGCGATGGCCC
TTGGGCTGGGAAGTTTGGACTTGACAGGGAATACGGGGATGCTGTTGGAA
TTCCGAGCAAGTCAATGTTTATGA

Synonyms

Publications