jgi.p|Nanoce1779_2|46635, mRNA_4924 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|46635
Unique Name	mRNA_4924
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1448
Alignment location	scaffold_12:40838..42657 -

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Properties


Property Name	Value
TranscriptId	46721
Track	FilteredModels2
ProteinId	46635

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:40838..42657 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|46635	gene_4924	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|46635	mRNA_4924-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4924	CDS_4924	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:40838..42657-
coding sequence from alignment at scaffold_12:40838..42657-

mRNA sequence

>mRNA_4924 ID=mRNA_4924|Name=jgi.p|Nanoce1779_2|46635|organism=Nannochloropsis oceanica|type=mRNA|length=1448bp
TTTTATTTCATAGGTCAGGATTGTGGCAGAGCATCGGCGACAGCATCCAG
GGCAGGCAGACAGGAAGGCAGAAAGAGCAGCGGACAGCCATCGGTCGCTC
ACCAGAGGAGGTGAATTGCTCCCTTCTCATCTTCTACACTTCCTGCACAT
ACCCTACGCACGAGCCAAAAGGAACGTCAAAACCAACGCCTCAATAATGA
CTGATACGCTGTCTGCACGCCCCGACCGACGCCGGCCCCGCACACTTATG
ACGTCGTTGTCCTCGACCATGGCAGCGGGAGGGCCATCTTCGTACCCCCG
CATCCTGGCCATCAGCATAGGCGGCCGCTCCTCAAACATCAGTAGCAACG
GCAGCAGCACTGATGGCAGCACAAGCCTTTCAATATCTTCGAAAAGAAAG
TTGACGGGGAAGGGGCATGACACAGCGGGAGCGTTGTGGTTCATGGCGAA
AAATTTCATTGCGGGGACCGCAGCGGGTGTTGCCGAATGCTTCGTGGGTC
ACCCTTTAGATACCATCAAGGTTCGCATGCAAGCAGCCACCGCTGGTCAG
GCCTCAGGAGCAGCAATCGCTGTTGCTGGTGTCGCCAAGATGAACGCTGC
GCAACTGCTAAAAAGTACCATCAAGCATGAAGGGTTCCTCGCGCTATATC
GTGGAGCCTCGTCTCGGGTTGTAGGCTCAGCGTTGGCCAATTCGGTATTA
TTTGGGGCAAATGGGGCCTTCAAAAAGCTGTTTGACGCTGACACAGCCTT
GCCGCTGAGTGGAGCGTTTATCCTAGCTTCGGCCTGTACGGGGGCGGCAG
AGGCAGCGATTTGGACACCCATGGATCTTCTGAAAACTCGCTGCCAAGTA
GAATACGGCAAAACTGTCAATGTTACTCCCTGGAAAGTTGCTAAGCAACT
CATCAAGGAGCACGGTATTATACGCGGGCTCTACGCAGGTGGAGGCCCCA
CCCTCATGAGGGAAGTTGTGGGCAACATGATCTATTTTACGGTCTACCAA
ACAACTAAGCAAGCCATTATGCGTGCTCGTGGTCTTCACGAGGGTGACAC
TTTGACTTTTATACTCGCAGGGGGATGCGCAGGGACGTCGTATTGGTTCT
CCATTTTGCCGCTGGACACGGTCAAGAGCATTGTACAGGCACAAGAGACA
CGAGTGACGGGTATGCACGTCGCAAGGGACTTATACATCAAGAATGGGGT
GGCTGCATTCTACCGAGGAGTGGGGCCGGCCATGCTACGGGCGTTCCCAG
CATGTGCGGCGACGTGGACGACATTTGAGTATTCCTTGCTCGCCTTGCAG
CGATTAGAATGATGTGGTTGGAAAGGGGTGGAGGGAGAGGGAAGCCATGC
TGATAAATTTTCGGGACACTTCGCTACTGGCGCGTCCTTGGAAGGAAGAG
CGCGAAGCTCAGTATATCGTGTGAACAAATCGACCGTGACAATAACAT

protein sequence of jgi.p|Nanoce1779_2|46635

>mRNA_4924-protein ID=mRNA_4924-protein|Name=jgi.p|Nanoce1779_2|46635|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MTDTLSARPDRRRPRTLMTSLSSTMAAGGPSSYPRILAISIGGRSSNISS
NGSSTDGSTSLSISSKRKLTGKGHDTAGALWFMAKNFIAGTAAGVAECFV
GHPLDTIKVRMQAATAGQASGAAIAVAGVAKMNAAQLLKSTIKHEGFLAL
YRGASSRVVGSALANSVLFGANGAFKKLFDADTALPLSGAFILASACTGA
AEAAIWTPMDLLKTRCQVEYGKTVNVTPWKVAKQLIKEHGIIRGLYAGGG
PTLMREVVGNMIYFTVYQTTKQAIMRARGLHEGDTLTFILAGGCAGTSYW
FSILPLDTVKSIVQAQETRVTGMHVARDLYIKNGVAAFYRGVGPAMLRAF
PACAATWTTFEYSLLALQRLE*

mRNA from alignment at scaffold_12:40838..42657-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4924 ID=mRNA_4924|Name=jgi.p|Nanoce1779_2|46635|organism=Nannochloropsis oceanica|type=mRNA|length=1820bp|location=Sequence derived from alignment at scaffold_12:40838..42657- (Nannochloropsis oceanica)
TTTTATTTCATAGGTCAGGATTGTGGCAGAGCATCGGCGACAGCATCCAG
GGCAGGCAGACAGGAAGGCAGAAAGAGCAGCGGACAGCCATCGGTCGCTC
ACCAGAGGAGGTGAATTGCTCCCTTCTCATCTTCTACACTTCCTGCACAT
ACCCTACGCACGAGCCAAAAGGAACGTCAAAACCAACGCCTCAATAATGA
CTGATACGCTGTCTGCACGCCCCGACCGACGCCGGCCCCGCACACTTATG
ACGTCGTTGTCCTCGACCATGGCAGCGGGAGGGCCATCTTCGTACCCCCG
CATCCTGGCCATCAGCATAGGCGGCCGCTCCTCAAACATCAGTAGCAACG
GCAGCAGCACTGATGGCAGCACAAGCCTTTCAATATCTTCGAAAAGAAAG
TTGACGGGGAAGGGGCATGACACAGCGGGAGCGTTGTGGTTCATGGCGAA
AAATTTCATTGCGGGGACCGCAGCGGGTACGTCGCTGTGGTGGAGCAAAG
TGGAAGATGGAGAATGAGGATCGGGTTGGAGAAGTGTTTCTATTTGTTAT
TAGTTTATGTATAAAAGTTGTACTCTTTGTTTCTTGTGTGAAATGAGACC
GGGAGAATCAGAACTTTCTTGCGAAGATGTACATACAGTCACACACACCT
TTTTCTCGCTGTCTCTCCTTCTTCATTCCCTTCCTTCCTCCAAGGTGTTG
CCGAATGCTTCGTGGGTCACCCTTTAGATACCATCAAGGTTCGCATGCAA
GCAGCCACCGCTGGTCAGGCCTCAGGAGCAGCAATCGCTGTTGCTGGTGT
CGCCAAGATGAACGCTGCGCAACTGCTAAAAAGTACCATCAAGCATGAAG
GGTTCCTCGCGCTATATCGTGGAGCCTCGTCTCGGGTTGTAGGCTCAGCG
TTGGCCAATTCGGTATTATTTGGGGCAAATGGGGCCTTCAAAAAGCTGTT
TGACGCTGACACAGCCTTGCCGCTGAGTGGAGCGTTTATCCTAGCTTCGG
CCTGTACGGGGGCGGCAGAGGCAGCGATTTGGACACCCATGGGTAAGGAG
AAGGGAGCATAATGAAGTATGGAGAACATGATTAAGAAGGAGAGGCCAGA
CAATTCTTCAAAAGCTCATATTATTTTCTTCTCACTACAACCATTACTCA
CCACTTTTCCTTCCCTCTCTCTACCCCATCCACCCACCAAAATTAGATCT
TCTGAAAACTCGCTGCCAAGTAGAATACGGCAAAACTGTCAATGTTACTC
CCTGGAAAGTTGCTAAGCAACTCATCAAGGAGCACGGTATTATACGCGGG
CTCTACGCAGGTGGAGGCCCCACCCTCATGAGGGAAGTTGTGGGCAACAT
GATCTATTTTACGGTCTACCAAACAACTAAGCAAGCCATTATGCGTGCTC
GTGGTCTTCACGAGGGTGACACTTTGACTTTTATACTCGCAGGGGGATGC
GCAGGGACGTCGTATTGGTTCTCCATTTTGCCGCTGGACACGGTCAAGAG
CATTGTACAGGCACAAGAGACACGAGTGACGGGTATGCACGTCGCAAGGG
ACTTATACATCAAGAATGGGGTGGCTGCATTCTACCGAGGAGTGGGGCCG
GCCATGCTACGGGCGTTCCCAGCATGTGCGGCGACGTGGACGACATTTGA
GTATTCCTTGCTCGCCTTGCAGCGATTAGAATGATGTGGTTGGAAAGGGG
TGGAGGGAGAGGGAAGCCATGCTGATAAATTTTCGGGACACTTCGCTACT
GGCGCGTCCTTGGAAGGAAGAGCGCGAAGCTCAGTATATCGTGTGAACAA
ATCGACCGTGACAATAACAT

Coding sequence (CDS) from alignment at scaffold_12:40838..42657-

>mRNA_4924 ID=mRNA_4924|Name=jgi.p|Nanoce1779_2|46635|organism=Nannochloropsis oceanica|type=CDS|length=3348bp|location=Sequence derived from alignment at scaffold_12:40838..42657- (Nannochloropsis oceanica)
ATCTTCTGAAAACTCGCTGCCAAGTAGAATACGGCAAAACTGTCAATGTT
ACTCCCTGGAAAGTTGCTAAGCAACTCATCAAGGAGCACGGTATTATACG
CGGGCTCTACGCAGGTGGAGGCCCCACCCTCATGAGGGAAGTTGTGGGCA
ACATGATCTATTTTACGGTCTACCAAACAACTAAGCAAGCCATTATGCGT
GCTCGTGGTCTTCACGAGGGTGACACTTTGACTTTTATACTCGCAGGGGG
ATGCGCAGGGACGTCGTATTGGTTCTCCATTTTGCCGCTGGACACGGTCA
AGAGCATTGTACAGGCACAAGAGACACGAGTGACGGGTATGCACGTCGCA
AGGGACTTATACATCAAGAATGGGGTGGCTGCATTCTACCGAGGAGTGGG
GCCGGCCATGCTACGGGCGTTCCCAGCATGTGCGGCGACGTGGACGACAT
TTGAGTATTCCTTGCTCGCCTTGCAGCGATTAGAATGAGTGTTGCCGAAT
GCTTCGTGGGTCACCCTTTAGATACCATCAAGGTTCGCATGCAAGCAGCC
ACCGCTGGTCAGGCCTCAGGAGCAGCAATCGCTGTTGCTGGTGTCGCCAA
GATGAACGCTGCGCAACTGCTAAAAAGTACCATCAAGCATGAAGGGTTCC
TCGCGCTATATCGTGGAGCCTCGTCTCGGGTTGTAGGCTCAGCGTTGGCC
AATTCGGTATTATTTGGGGCAAATGGGGCCTTCAAAAAGCTGTTTGACGC
TGACACAGCCTTGCCGCTGAGTGGAGCGTTTATCCTAGCTTCGGCCTGTA
CGGGGGCGGCAGAGGCAGCGATTTGGACACCCATGGATGACTGATACGCT
GTCTGCACGCCCCGACCGACGCCGGCCCCGCACACTTATGACGTCGTTGT
CCTCGACCATGGCAGCGGGAGGGCCATCTTCGTACCCCCGCATCCTGGCC
ATCAGCATAGGCGGCCGCTCCTCAAACATCAGTAGCAACGGCAGCAGCAC
TGATGGCAGCACAAGCCTTTCAATATCTTCGAAAAGAAAGTTGACGGGGA
AGGGGCATGACACAGCGGGAGCGTTGTGGTTCATGGCGAAAAATTTCATT
GCGGGGACCGCAGCGGATCTTCTGAAAACTCGCTGCCAAGTAGAATACGG
CAAAACTGTCAATGTTACTCCCTGGAAAGTTGCTAAGCAACTCATCAAGG
AGCACGGTATTATACGCGGGCTCTACGCAGGTGGAGGCCCCACCCTCATG
AGGGAAGTTGTGGGCAACATGATCTATTTTACGGTCTACCAAACAACTAA
GCAAGCCATTATGCGTGCTCGTGGTCTTCACGAGGGTGACACTTTGACTT
TTATACTCGCAGGGGGATGCGCAGGGACGTCGTATTGGTTCTCCATTTTG
CCGCTGGACACGGTCAAGAGCATTGTACAGGCACAAGAGACACGAGTGAC
GGGTATGCACGTCGCAAGGGACTTATACATCAAGAATGGGGTGGCTGCAT
TCTACCGAGGAGTGGGGCCGGCCATGCTACGGGCGTTCCCAGCATGTGCG
GCGACGTGGACGACATTTGAGTATTCCTTGCTCGCCTTGCAGCGATTAGA
ATGAGTGTTGCCGAATGCTTCGTGGGTCACCCTTTAGATACCATCAAGGT
TCGCATGCAAGCAGCCACCGCTGGTCAGGCCTCAGGAGCAGCAATCGCTG
TTGCTGGTGTCGCCAAGATGAACGCTGCGCAACTGCTAAAAAGTACCATC
AAGCATGAAGGGTTCCTCGCGCTATATCGTGGAGCCTCGTCTCGGGTTGT
AGGCTCAGCGTTGGCCAATTCGGTATTATTTGGGGCAAATGGGGCCTTCA
AAAAGCTGTTTGACGCTGACACAGCCTTGCCGCTGAGTGGAGCGTTTATC
CTAGCTTCGGCCTGTACGGGGGCGGCAGAGGCAGCGATTTGGACACCCAT
GGATGACTGATACGCTGTCTGCACGCCCCGACCGACGCCGGCCCCGCACA
CTTATGACGTCGTTGTCCTCGACCATGGCAGCGGGAGGGCCATCTTCGTA
CCCCCGCATCCTGGCCATCAGCATAGGCGGCCGCTCCTCAAACATCAGTA
GCAACGGCAGCAGCACTGATGGCAGCACAAGCCTTTCAATATCTTCGAAA
AGAAAGTTGACGGGGAAGGGGCATGACACAGCGGGAGCGTTGTGGTTCAT
GGCGAAAAATTTCATTGCGGGGACCGCAGCGGATCTTCTGAAAACTCGCT
GCCAAGTAGAATACGGCAAAACTGTCAATGTTACTCCCTGGAAAGTTGCT
AAGCAACTCATCAAGGAGCACGGTATTATACGCGGGCTCTACGCAGGTGG
AGGCCCCACCCTCATGAGGGAAGTTGTGGGCAACATGATCTATTTTACGG
TCTACCAAACAACTAAGCAAGCCATTATGCGTGCTCGTGGTCTTCACGAG
GGTGACACTTTGACTTTTATACTCGCAGGGGGATGCGCAGGGACGTCGTA
TTGGTTCTCCATTTTGCCGCTGGACACGGTCAAGAGCATTGTACAGGCAC
AAGAGACACGAGTGACGGGTATGCACGTCGCAAGGGACTTATACATCAAG
AATGGGGTGGCTGCATTCTACCGAGGAGTGGGGCCGGCCATGCTACGGGC
GTTCCCAGCATGTGCGGCGACGTGGACGACATTTGAGTATTCCTTGCTCG
CCTTGCAGCGATTAGAATGAGTGTTGCCGAATGCTTCGTGGGTCACCCTT
TAGATACCATCAAGGTTCGCATGCAAGCAGCCACCGCTGGTCAGGCCTCA
GGAGCAGCAATCGCTGTTGCTGGTGTCGCCAAGATGAACGCTGCGCAACT
GCTAAAAAGTACCATCAAGCATGAAGGGTTCCTCGCGCTATATCGTGGAG
CCTCGTCTCGGGTTGTAGGCTCAGCGTTGGCCAATTCGGTATTATTTGGG
GCAAATGGGGCCTTCAAAAAGCTGTTTGACGCTGACACAGCCTTGCCGCT
GAGTGGAGCGTTTATCCTAGCTTCGGCCTGTACGGGGGCGGCAGAGGCAG
CGATTTGGACACCCATGGATGACTGATACGCTGTCTGCACGCCCCGACCG
ACGCCGGCCCCGCACACTTATGACGTCGTTGTCCTCGACCATGGCAGCGG
GAGGGCCATCTTCGTACCCCCGCATCCTGGCCATCAGCATAGGCGGCCGC
TCCTCAAACATCAGTAGCAACGGCAGCAGCACTGATGGCAGCACAAGCCT
TTCAATATCTTCGAAAAGAAAGTTGACGGGGAAGGGGCATGACACAGCGG
GAGCGTTGTGGTTCATGGCGAAAAATTTCATTGCGGGGACCGCAGCGG

Synonyms

Publications