jgi.p|Nanoce1779_2|590830, mRNA_4923 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590830
Unique NamemRNA_4923
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1719
Alignment locationscaffold_12:38162..39880 -

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Properties
Property NameValue
TranscriptId590916
TrackFilteredModels2
ProteinId590830
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:38162..39880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590830gene_4923Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590830mRNA_4923-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4923CDS_4923Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4923 ID=mRNA_4923|Name=jgi.p|Nanoce1779_2|590830|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp
AGGCTGGCAGCTAATTTGCGACAATTTGATGACCCCTGATATTATGCGTT
TGGCCCAGACGTCCAGGGATCACTTGGGCGTCGGGTTCTCCATGGTCCAG
CACCTTGTCCTCCGCCTTGACGACGCGGATCAAGACCACGGTGGCAATGA
GGGAACGCATGCCGCGTCCCAGAGCGTCACCATGCAGCTGAGTCACTTGT
TAGCTCGATGTCCGCATCTTGAGACACTTTCATGCTGGTCCCTGGCATCT
AAAAAGTCTATTTATCTCGGTCGCGCCCTGTGCCTCCAGCCCTGCTTCCC
TCGACTGCGTGTGCTCGCCTTGACCAATGCCGGGCTAGGTGCAGAAGGTC
TACGACAATTACTGCCCTCTTTTATTTATCTTCCTGCACTAGAAGAGCTA
CTCTTGGATGGAAACGCTCTGGGGAATCAAGGCGTTCAGGCTTTGGCTCG
ATGCCTCCGAGGAGGCAGTGGTGACGGGACAACAGACAAAGGAGGGGATG
TCCACGCGCATACATACGCATCAGCATCATGTCAGCGGCTCAAGGTCTTA
TCATTGGCTGCCAATGGTATTGGAGCCACGGGGGCGCGAGAATTGGCCCT
GCTGCTGGCAGGGGTAGGTCATAGTGCTGGTGCTGCTGCTCCTCCTCCTC
CTCCTCTAGCTGATCCTGGTCCTCCTGGTGCAGGAAGCTCCATTCTTAGC
GGGCGCATTTCACCCATATGTGGCGATATCCCCTCTTACAATGGCCTCAT
ATATCAATATCAGCCACCGAACCACTCGCATGCCTGCGTCTTTCTCGAAA
TCCTTTCCTTAGATGGCAACGTGTTGGGGCCTACAGGCACAGCACACCTT
GCTCACGCCTTCCGAGGAGGGGCGTGTTATTATCTTCGGCAACTCCACCT
TCGAAATAATGATGTCCGTGGGGAAGGCCTTCGAGAGCTCCTCAGTGCCT
TTGCCATCGGAGCCTGCCCGCGACTGGCAGTCTTGAGCTTAGAATCCAAT
ATGTTTGGGACACAGGGCGCGAAATTGCTAGCGCGTGCCTTAACTTCCGG
GGCATGTGCAGAGTTGCTCGTTCTGAATTTGAACTTTACCTTTATTGGCG
AGCATGGGACAAGGGCTCTAGCTGAGGCGTTTGGACGAGGGGCATGTCGA
CGCATACAGAAGTTGTACTTCAAGTCGGCTTGTTTGCAGAGGGCAGGGAC
GATTGATCATTTGCTGGCGGCAACGGCGGCAACAGTTGGGGACGTTGGCG
GGATAGGCGGACGAAGGGGAGAACGAAGGGAGGATGGGAGGGAGGCGGTG
CTAGTGTTGTAAAGGGATCGGAAGTTGTGCAGAGGAGATGTTACAGATGA
AGGGAGGGTAGCCGGAAAACCAGGTCATGCATCGACAGTAAGTACTAGAA
TGTCAGAATATATATACTGTAAATCATTAGACTAAATTTTTCACAAGGGG
ATGTTACACAACGGTTGGTTGAATACGTAAGATGAATAAAGAAACATGGG
AAGATCAACCTCCCCTCGAGTGGTTAGGTGAGATCATTATGTAAGCAAAA
GTAACTAGCAGACATACATCATTGCAATAAATGACGTCCAGGAATTGGAC
TAACCAATGTCCATGAGCAAAATCCAGTACAGCAAATAAATAGAGAGCAC
TAGACTTCGCAACAGCGTTCCTGGGCGGATGAGTCCACTTTTCAAAGAAG
ACGACCACCTGCTGCCGTG
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protein sequence of jgi.p|Nanoce1779_2|590830

>mRNA_4923-protein ID=mRNA_4923-protein|Name=jgi.p|Nanoce1779_2|590830|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MTPDIMRLAQTSRDHLGVGFSMVQHLVLRLDDADQDHGGNEGTHAASQSV
TMQLSHLLARCPHLETLSCWSLASKKSIYLGRALCLQPCFPRLRVLALTN
AGLGAEGLRQLLPSFIYLPALEELLLDGNALGNQGVQALARCLRGGSGDG
TTDKGGDVHAHTYASASCQRLKVLSLAANGIGATGARELALLLAGVGHSA
GAAAPPPPPLADPGPPGAGSSILSGRISPICGDIPSYNGLIYQYQPPNHS
HACVFLEILSLDGNVLGPTGTAHLAHAFRGGACYYLRQLHLRNNDVRGEG
LRELLSAFAIGACPRLAVLSLESNMFGTQGAKLLARALTSGACAELLVLN
LNFTFIGEHGTRALAEAFGRGACRRIQKLYFKSACLQRAGTIDHLLAATA
ATVGDVGGIGGRRGERREDGREAVLVL*
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mRNA from alignment at scaffold_12:38162..39880-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4923 ID=mRNA_4923|Name=jgi.p|Nanoce1779_2|590830|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp|location=Sequence derived from alignment at scaffold_12:38162..39880- (Nannochloropsis oceanica)
AGGCTGGCAGCTAATTTGCGACAATTTGATGACCCCTGATATTATGCGTT
TGGCCCAGACGTCCAGGGATCACTTGGGCGTCGGGTTCTCCATGGTCCAG
CACCTTGTCCTCCGCCTTGACGACGCGGATCAAGACCACGGTGGCAATGA
GGGAACGCATGCCGCGTCCCAGAGCGTCACCATGCAGCTGAGTCACTTGT
TAGCTCGATGTCCGCATCTTGAGACACTTTCATGCTGGTCCCTGGCATCT
AAAAAGTCTATTTATCTCGGTCGCGCCCTGTGCCTCCAGCCCTGCTTCCC
TCGACTGCGTGTGCTCGCCTTGACCAATGCCGGGCTAGGTGCAGAAGGTC
TACGACAATTACTGCCCTCTTTTATTTATCTTCCTGCACTAGAAGAGCTA
CTCTTGGATGGAAACGCTCTGGGGAATCAAGGCGTTCAGGCTTTGGCTCG
ATGCCTCCGAGGAGGCAGTGGTGACGGGACAACAGACAAAGGAGGGGATG
TCCACGCGCATACATACGCATCAGCATCATGTCAGCGGCTCAAGGTCTTA
TCATTGGCTGCCAATGGTATTGGAGCCACGGGGGCGCGAGAATTGGCCCT
GCTGCTGGCAGGGGTAGGTCATAGTGCTGGTGCTGCTGCTCCTCCTCCTC
CTCCTCTAGCTGATCCTGGTCCTCCTGGTGCAGGAAGCTCCATTCTTAGC
GGGCGCATTTCACCCATATGTGGCGATATCCCCTCTTACAATGGCCTCAT
ATATCAATATCAGCCACCGAACCACTCGCATGCCTGCGTCTTTCTCGAAA
TCCTTTCCTTAGATGGCAACGTGTTGGGGCCTACAGGCACAGCACACCTT
GCTCACGCCTTCCGAGGAGGGGCGTGTTATTATCTTCGGCAACTCCACCT
TCGAAATAATGATGTCCGTGGGGAAGGCCTTCGAGAGCTCCTCAGTGCCT
TTGCCATCGGAGCCTGCCCGCGACTGGCAGTCTTGAGCTTAGAATCCAAT
ATGTTTGGGACACAGGGCGCGAAATTGCTAGCGCGTGCCTTAACTTCCGG
GGCATGTGCAGAGTTGCTCGTTCTGAATTTGAACTTTACCTTTATTGGCG
AGCATGGGACAAGGGCTCTAGCTGAGGCGTTTGGACGAGGGGCATGTCGA
CGCATACAGAAGTTGTACTTCAAGTCGGCTTGTTTGCAGAGGGCAGGGAC
GATTGATCATTTGCTGGCGGCAACGGCGGCAACAGTTGGGGACGTTGGCG
GGATAGGCGGACGAAGGGGAGAACGAAGGGAGGATGGGAGGGAGGCGGTG
CTAGTGTTGTAAAGGGATCGGAAGTTGTGCAGAGGAGATGTTACAGATGA
AGGGAGGGTAGCCGGAAAACCAGGTCATGCATCGACAGTAAGTACTAGAA
TGTCAGAATATATATACTGTAAATCATTAGACTAAATTTTTCACAAGGGG
ATGTTACACAACGGTTGGTTGAATACGTAAGATGAATAAAGAAACATGGG
AAGATCAACCTCCCCTCGAGTGGTTAGGTGAGATCATTATGTAAGCAAAA
GTAACTAGCAGACATACATCATTGCAATAAATGACGTCCAGGAATTGGAC
TAACCAATGTCCATGAGCAAAATCCAGTACAGCAAATAAATAGAGAGCAC
TAGACTTCGCAACAGCGTTCCTGGGCGGATGAGTCCACTTTTCAAAGAAG
ACGACCACCTGCTGCCGTG
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Coding sequence (CDS) from alignment at scaffold_12:38162..39880-

>mRNA_4923 ID=mRNA_4923|Name=jgi.p|Nanoce1779_2|590830|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_12:38162..39880- (Nannochloropsis oceanica)
ATGACCCCTGATATTATGCGTTTGGCCCAGACGTCCAGGGATCACTTGGG
CGTCGGGTTCTCCATGGTCCAGCACCTTGTCCTCCGCCTTGACGACGCGG
ATCAAGACCACGGTGGCAATGAGGGAACGCATGCCGCGTCCCAGAGCGTC
ACCATGCAGCTGAGTCACTTGTTAGCTCGATGTCCGCATCTTGAGACACT
TTCATGCTGGTCCCTGGCATCTAAAAAGTCTATTTATCTCGGTCGCGCCC
TGTGCCTCCAGCCCTGCTTCCCTCGACTGCGTGTGCTCGCCTTGACCAAT
GCCGGGCTAGGTGCAGAAGGTCTACGACAATTACTGCCCTCTTTTATTTA
TCTTCCTGCACTAGAAGAGCTACTCTTGGATGGAAACGCTCTGGGGAATC
AAGGCGTTCAGGCTTTGGCTCGATGCCTCCGAGGAGGCAGTGGTGACGGG
ACAACAGACAAAGGAGGGGATGTCCACGCGCATACATACGCATCAGCATC
ATGTCAGCGGCTCAAGGTCTTATCATTGGCTGCCAATGGTATTGGAGCCA
CGGGGGCGCGAGAATTGGCCCTGCTGCTGGCAGGGGTAGGTCATAGTGCT
GGTGCTGCTGCTCCTCCTCCTCCTCCTCTAGCTGATCCTGGTCCTCCTGG
TGCAGGAAGCTCCATTCTTAGCGGGCGCATTTCACCCATATGTGGCGATA
TCCCCTCTTACAATGGCCTCATATATCAATATCAGCCACCGAACCACTCG
CATGCCTGCGTCTTTCTCGAAATCCTTTCCTTAGATGGCAACGTGTTGGG
GCCTACAGGCACAGCACACCTTGCTCACGCCTTCCGAGGAGGGGCGTGTT
ATTATCTTCGGCAACTCCACCTTCGAAATAATGATGTCCGTGGGGAAGGC
CTTCGAGAGCTCCTCAGTGCCTTTGCCATCGGAGCCTGCCCGCGACTGGC
AGTCTTGAGCTTAGAATCCAATATGTTTGGGACACAGGGCGCGAAATTGC
TAGCGCGTGCCTTAACTTCCGGGGCATGTGCAGAGTTGCTCGTTCTGAAT
TTGAACTTTACCTTTATTGGCGAGCATGGGACAAGGGCTCTAGCTGAGGC
GTTTGGACGAGGGGCATGTCGACGCATACAGAAGTTGTACTTCAAGTCGG
CTTGTTTGCAGAGGGCAGGGACGATTGATCATTTGCTGGCGGCAACGGCG
GCAACAGTTGGGGACGTTGGCGGGATAGGCGGACGAAGGGGAGAACGAAG
GGAGGATGGGAGGGAGGCGGTGCTAGTGTTGTAA
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Synonyms
Publications