jgi.p|Nanoce1779_2|630648, mRNA_4920 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630648
Unique Name	mRNA_4920
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1474
Alignment location	scaffold_12:30274..31747 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630734
Track	FilteredModels2
ProteinId	630648

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:30274..31747 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630648	gene_4920	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630648	mRNA_4920-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4920	CDS_4920	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:30274..31747+
coding sequence from alignment at scaffold_12:30274..31747+

mRNA sequence

>mRNA_4920 ID=mRNA_4920|Name=jgi.p|Nanoce1779_2|630648|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp
CAGCAGGCCAGCTGTGGGCATTCACAAAGTCCATGTCCTCATCGGCCATG
TCCCGCGTTCCATCTGTCCTCGGATCTCGCCCCTCTTCCTCCCGGCGCCA
CCTCCTCCGACCAATCCGCCCTTTCAGCACGACCCGTGTCCCACAAAAAC
AGCCTCCCCCCGGAACCTACGCCTGGAGGGATCTCCCCTACCATAACCCC
CTCTCCCCCCACCCCCCCCACCCCAAACACCACCTCGACATCTTTATTTC
CTCTTCCGGGCCTTTTCCTCGTCCCACGCAGCCCGTCCTTGTATTCGTGC
ACGGCGGGCTGTGGATACGTGGCGACCGACAACATCCTTCTAAGCCTGGA
CTCTACGAAAACGTGGGTGTAGCATGCGCTCGCGCTGGGATTGTAGGTGT
GATTATCTCTTATCGACTGGCGCCTGATGTGCTAGTTTTTGATCAGATTC
AGGATGTGAAAAAGGCCGTAAAATGGGTGATGAGGGAGGTGGGAAGATAC
GGGGGGGATTCAAGGAAGGTCTTTATCGGGGGAGTATCGGCGGGTGCGCA
TTTATGCGCGGCGCTGTTAGCTTCTGAAGAGGAGGAGGAGGAACGGGAAG
GAGAAAAAAAAGGGCAGGTGAGAGGACTGGTGGCATTATCGGGTGTTTAT
AATTTGGAGAGATTGACAAGGCTTGGTAGAGCAGAGGGAGGGATAGATGG
GCTGTCGCCGTTGTTGATGGTGCCCGTGTTCGGCGAAGATGAGAGCAAAT
GGCCTTTGGCCTCACCAGTGCATTTGTTGAGGAGGGCGAGGGGGAGGAAA
GGGGGGGGCAAGGGGGAAAGGGAGGTGGGTTTGCCACTGGAAACAGTGCC
TATGTTGTTGATTAATGCGGAGATGGATTTCCACTTGGAGGAAGACGCGA
TGGAGCTGGTGGAGGAGCTGGAGGGAGGGAAGGAGGGAAGGAGGGAAGGG
AAGTTAATGGTTGAGAGAAAGAGGGTGGTTGTACCGGGAACGGATCATAT
TTCGTTGGTGCAGGAATTGGGGATGAAAGAGGGAGGGGGGGAGGGAGGGA
GGGAGGGGAGGACGGTGCTGGAGGGGCACGTGTTTGACTTTATTCACCGG
CACTCACAGTGACTGATAGGGAGGAAGCACTTAGAGGATGTGATTGGAGA
CTGCATGAAGGAGGAGAAGGGAAAGCAGAGTGTGTGTACCGGTGGTGGTG
CTGTAGCTCCGGGCACCGGGACACAGCACAGAAATGTGCTTGCCGCGCCA
ATTAACGGCAGGAAATGGTGGCGCCTATGTGTGCAGATGGACTGATAAAA
ATTACCCATCACACACCCCAAAAGCACAGAAAACAAATAAAGAAGCTGCT
GCTTCTCCACGTTCCCCCTTATCGGCAAAAACACCTCATCAACGACAACT
CCAACAGAACCGCCACCAGCATCAGCACCACCACGCGTGCACTCCCCCGA
AGCAGCAGCAGCAGCAGCAGCAGC

protein sequence of jgi.p|Nanoce1779_2|630648

>mRNA_4920-protein ID=mRNA_4920-protein|Name=jgi.p|Nanoce1779_2|630648|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MSSSAMSRVPSVLGSRPSSSRRHLLRPIRPFSTTRVPQKQPPPGTYAWRD
LPYHNPLSPHPPHPKHHLDIFISSSGPFPRPTQPVLVFVHGGLWIRGDRQ
HPSKPGLYENVGVACARAGIVGVIISYRLAPDVLVFDQIQDVKKAVKWVM
REVGRYGGDSRKVFIGGVSAGAHLCAALLASEEEEEEREGEKKGQVRGLV
ALSGVYNLERLTRLGRAEGGIDGLSPLLMVPVFGEDESKWPLASPVHLLR
RARGRKGGGKGEREVGLPLETVPMLLINAEMDFHLEEDAMELVEELEGGK
EGRREGKLMVERKRVVVPGTDHISLVQELGMKEGGGEGGREGRTVLEGHV
FDFIHRHSQ*

mRNA from alignment at scaffold_12:30274..31747+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4920 ID=mRNA_4920|Name=jgi.p|Nanoce1779_2|630648|organism=Nannochloropsis oceanica|type=mRNA|length=1474bp|location=Sequence derived from alignment at scaffold_12:30274..31747+ (Nannochloropsis oceanica)
CAGCAGGCCAGCTGTGGGCATTCACAAAGTCCATGTCCTCATCGGCCATG
TCCCGCGTTCCATCTGTCCTCGGATCTCGCCCCTCTTCCTCCCGGCGCCA
CCTCCTCCGACCAATCCGCCCTTTCAGCACGACCCGTGTCCCACAAAAAC
AGCCTCCCCCCGGAACCTACGCCTGGAGGGATCTCCCCTACCATAACCCC
CTCTCCCCCCACCCCCCCCACCCCAAACACCACCTCGACATCTTTATTTC
CTCTTCCGGGCCTTTTCCTCGTCCCACGCAGCCCGTCCTTGTATTCGTGC
ACGGCGGGCTGTGGATACGTGGCGACCGACAACATCCTTCTAAGCCTGGA
CTCTACGAAAACGTGGGTGTAGCATGCGCTCGCGCTGGGATTGTAGGTGT
GATTATCTCTTATCGACTGGCGCCTGATGTGCTAGTTTTTGATCAGATTC
AGGATGTGAAAAAGGCCGTAAAATGGGTGATGAGGGAGGTGGGAAGATAC
GGGGGGGATTCAAGGAAGGTCTTTATCGGGGGAGTATCGGCGGGTGCGCA
TTTATGCGCGGCGCTGTTAGCTTCTGAAGAGGAGGAGGAGGAACGGGAAG
GAGAAAAAAAAGGGCAGGTGAGAGGACTGGTGGCATTATCGGGTGTTTAT
AATTTGGAGAGATTGACAAGGCTTGGTAGAGCAGAGGGAGGGATAGATGG
GCTGTCGCCGTTGTTGATGGTGCCCGTGTTCGGCGAAGATGAGAGCAAAT
GGCCTTTGGCCTCACCAGTGCATTTGTTGAGGAGGGCGAGGGGGAGGAAA
GGGGGGGGCAAGGGGGAAAGGGAGGTGGGTTTGCCACTGGAAACAGTGCC
TATGTTGTTGATTAATGCGGAGATGGATTTCCACTTGGAGGAAGACGCGA
TGGAGCTGGTGGAGGAGCTGGAGGGAGGGAAGGAGGGAAGGAGGGAAGGG
AAGTTAATGGTTGAGAGAAAGAGGGTGGTTGTACCGGGAACGGATCATAT
TTCGTTGGTGCAGGAATTGGGGATGAAAGAGGGAGGGGGGGAGGGAGGGA
GGGAGGGGAGGACGGTGCTGGAGGGGCACGTGTTTGACTTTATTCACCGG
CACTCACAGTGACTGATAGGGAGGAAGCACTTAGAGGATGTGATTGGAGA
CTGCATGAAGGAGGAGAAGGGAAAGCAGAGTGTGTGTACCGGTGGTGGTG
CTGTAGCTCCGGGCACCGGGACACAGCACAGAAATGTGCTTGCCGCGCCA
ATTAACGGCAGGAAATGGTGGCGCCTATGTGTGCAGATGGACTGATAAAA
ATTACCCATCACACACCCCAAAAGCACAGAAAACAAATAAAGAAGCTGCT
GCTTCTCCACGTTCCCCCTTATCGGCAAAAACACCTCATCAACGACAACT
CCAACAGAACCGCCACCAGCATCAGCACCACCACGCGTGCACTCCCCCGA
AGCAGCAGCAGCAGCAGCAGCAGC

Coding sequence (CDS) from alignment at scaffold_12:30274..31747+

>mRNA_4920 ID=mRNA_4920|Name=jgi.p|Nanoce1779_2|630648|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_12:30274..31747+ (Nannochloropsis oceanica)
ATGTCCTCATCGGCCATGTCCCGCGTTCCATCTGTCCTCGGATCTCGCCC
CTCTTCCTCCCGGCGCCACCTCCTCCGACCAATCCGCCCTTTCAGCACGA
CCCGTGTCCCACAAAAACAGCCTCCCCCCGGAACCTACGCCTGGAGGGAT
CTCCCCTACCATAACCCCCTCTCCCCCCACCCCCCCCACCCCAAACACCA
CCTCGACATCTTTATTTCCTCTTCCGGGCCTTTTCCTCGTCCCACGCAGC
CCGTCCTTGTATTCGTGCACGGCGGGCTGTGGATACGTGGCGACCGACAA
CATCCTTCTAAGCCTGGACTCTACGAAAACGTGGGTGTAGCATGCGCTCG
CGCTGGGATTGTAGGTGTGATTATCTCTTATCGACTGGCGCCTGATGTGC
TAGTTTTTGATCAGATTCAGGATGTGAAAAAGGCCGTAAAATGGGTGATG
AGGGAGGTGGGAAGATACGGGGGGGATTCAAGGAAGGTCTTTATCGGGGG
AGTATCGGCGGGTGCGCATTTATGCGCGGCGCTGTTAGCTTCTGAAGAGG
AGGAGGAGGAACGGGAAGGAGAAAAAAAAGGGCAGGTGAGAGGACTGGTG
GCATTATCGGGTGTTTATAATTTGGAGAGATTGACAAGGCTTGGTAGAGC
AGAGGGAGGGATAGATGGGCTGTCGCCGTTGTTGATGGTGCCCGTGTTCG
GCGAAGATGAGAGCAAATGGCCTTTGGCCTCACCAGTGCATTTGTTGAGG
AGGGCGAGGGGGAGGAAAGGGGGGGGCAAGGGGGAAAGGGAGGTGGGTTT
GCCACTGGAAACAGTGCCTATGTTGTTGATTAATGCGGAGATGGATTTCC
ACTTGGAGGAAGACGCGATGGAGCTGGTGGAGGAGCTGGAGGGAGGGAAG
GAGGGAAGGAGGGAAGGGAAGTTAATGGTTGAGAGAAAGAGGGTGGTTGT
ACCGGGAACGGATCATATTTCGTTGGTGCAGGAATTGGGGATGAAAGAGG
GAGGGGGGGAGGGAGGGAGGGAGGGGAGGACGGTGCTGGAGGGGCACGTG
TTTGACTTTATTCACCGGCACTCACAGTGA

Synonyms

Publications