jgi.p|Nanoce1779_2|590819, mRNA_4919 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590819
Unique NamemRNA_4919
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length474
Alignment locationscaffold_12:29711..30297 -

Link to JBrowse

Properties
Property NameValue
TranscriptId590905
TrackFilteredModels2
ProteinId590819
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:29711..30297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590819gene_4919Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590819mRNA_4919-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4919CDS_4919Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4919 ID=mRNA_4919|Name=jgi.p|Nanoce1779_2|590819|organism=Nannochloropsis oceanica|type=mRNA|length=474bp
TGAATGCCCACAGCTGGCCTGCTTTCTTGCTTTAGGGCCGCATGCTGTGT
GCATTTCAAGCCGTGGCGTAGGTGACAAGGGTGCCGGGAAGAGAAAGGCT
ACAGCACGGCATGAATCATCACCAACAGAGCAAGAAGGCATGCTTTTACC
TCAGTGGCTTGCCTGGCTGCCTTTTCCCATCTGCAATGCACTACTACAGG
CATCACCATGCATCCAGCACTCAACATATTCTTCTCATACTATAATTTGC
ATGTGTCCAAGGCGGCTGACGTGCATTGTACGGGGTGTGTGTGTGGTATC
AATACAGAAGAAGTCGTGCATCATCGTGGCTCATTTTTGGCGCAAAGTCA
ATGCAAGCCCACCCACCTTGACAACACCGCACACCCTCACTCCACACACA
CATCCATGGAGTCCAGGGACATCGTGAACGTAAACTCGGAGCCTGCGGAC
CCCATCGCTCTTCCCAACACCCCC
back to top

protein sequence of jgi.p|Nanoce1779_2|590819

>mRNA_4919-protein ID=mRNA_4919-protein|Name=jgi.p|Nanoce1779_2|590819|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MLLPQWLAWLPFPICNALLQASPCIQHSTYSSHTIICMCPRRLTCIVRGV
CVVSIQKKSCIIVAHFWRKVNASPPTLTTPHTLTPHTHPWSPGTS*
back to top

mRNA from alignment at scaffold_12:29711..30297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4919 ID=mRNA_4919|Name=jgi.p|Nanoce1779_2|590819|organism=Nannochloropsis oceanica|type=mRNA|length=587bp|location=Sequence derived from alignment at scaffold_12:29711..30297- (Nannochloropsis oceanica)
TGAATGCCCACAGCTGGCCTGCTGCCAAAGGCGGGCGGTGGGGGGGGTAG
GTGAGGAGGTAGAAAGGAGAGTGAGTTAGCTTACGAAAGATACAATGCTA
CGCCACCCAAAAAGGAATTTATCCATCTTCATGCCTTTCTTGCTTTAGGG
CCGCATGCTGTGTGCATTTCAAGCCGTGGCGTAGGTGACAAGGGTGCCGG
GAAGAGAAAGGCTACAGCACGGCATGAATCATCACCAACAGAGCAAGAAG
GCATGCTTTTACCTCAGTGGCTTGCCTGGCTGCCTTTTCCCATCTGCAAT
GCACTACTACAGGCATCACCATGCATCCAGCACTCAACATATTCTTCTCA
TACTATAATTTGCATGTGTCCAAGGCGGCTGACGTGCATTGTACGGGGTG
TGTGTGTGGTATCAATACAGAAGAAGTCGTGCATCATCGTGGCTCATTTT
TGGCGCAAAGTCAATGCAAGCCCACCCACCTTGACAACACCGCACACCCT
CACTCCACACACACATCCATGGAGTCCAGGGACATCGTGAACGTAAACTC
GGAGCCTGCGGACCCCATCGCTCTTCCCAACACCCCC
back to top

Coding sequence (CDS) from alignment at scaffold_12:29711..30297-

>mRNA_4919 ID=mRNA_4919|Name=jgi.p|Nanoce1779_2|590819|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_12:29711..30297- (Nannochloropsis oceanica)
ATGCTTTTACCTCAGTGGCTTGCCTGGCTGCCTTTTCCCATCTGCAATGC
ACTACTACAGGCATCACCATGCATCCAGCACTCAACATATTCTTCTCATA
CTATAATTTGCATGTGTCCAAGGCGGCTGACGTGCATTGTACGGGGTGTG
TGTGTGGTATCAATACAGAAGAAGTCGTGCATCATCGTGGCTCATTTTTG
GCGCAAAGTCAATGCAAGCCCACCCACCTTGACAACACCGCACACCCTCA
CTCCACACACACATCCATGGAGTCCAGGGACATCGTGA
back to top
Synonyms
Publications