jgi.p|Nanoce1779_2|590807, mRNA_4917 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590807
Unique Name	mRNA_4917
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1679
Alignment location	scaffold_12:18753..20431 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	590893
Track	FilteredModels2
ProteinId	590807

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:18753..20431 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590807	gene_4917	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590807	mRNA_4917-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4917	CDS_4917	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:18753..20431+
coding sequence from alignment at scaffold_12:18753..20431+

mRNA sequence

>mRNA_4917 ID=mRNA_4917|Name=jgi.p|Nanoce1779_2|590807|organism=Nannochloropsis oceanica|type=mRNA|length=1679bp
CAGCAGCAGCAGCAGCAGCAGCAAGAGGAGGAGGAGGAGGAGAAAGAGAA
AGAGAAAGATCAGGAGGAGGAAGGGTCTCTTCGGCTTTTTCGGATAAGAA
AATGAAGGGAATTAAGAAGTTGCCCTCGCCTACGACCTCCCTCCCCACCT
TGTCCTCTATCCCCTCTTCGGAGCCTGCCTCCTTTTTGAACTACGTCGGA
GGAGGTGTCGAAGAGTTCAAGCCCTCATCCCCTTCCTCGCTCCCTTCTTT
TTCCCCCATCTCCACTTCTGCTGGAGCAGGAGTAGTTGCGGAAGGCAAAG
GGAGGCTGTCGCCGGTCCCGACGCTGACGCCCGTTCCTCTCCGCACCAAG
CGAGGCGGTTCTCTTTCCGCCACAAACATCGACACCAGCACTAGCACAAC
CAGCAGCATCGCTAGCAACATGACTATGTACGGCAATGACACCACAAGAT
CGACAACGACCGCAACAGTCACGTCCCCAGCAGCAGCAGCAGCAGCAGCT
GCCGCCGCAGCGAAGGCAACAGTCAATGGAGGCCCGGCTTCCTCTGCTGG
CACCAAGTCCGTCGTTGTCGTCGTCCCCACTCGCCCCTCATCCCCCACCA
CCACCGCCAGCAATACCAGCACCGTCCCCTTCTCTCCACCGGCCAAATCC
CTCTCTCGTCCGGCGCCCGTTAAGACTACTCGCTTTTCCTCCTCCACTTC
CCCGTCCCGCCCCACTGTCCTCATCGACGCCTACGTCTTTCTACGTAAGC
GTGAGCTTGACTGGCTTCGTTCCCTTCCACCCGCCTATCAAGCCGCGCTT
GATTACGGCCGTACCGGCACGTCATTCTGCGCCCACCAGCATCTTTACTG
CGCTCGCCTCCTCCTCTCCCTCATCGGCCTCCGCCCGTGCGTCGTGATTC
CTCCTCATGACATCTGGAGGGAAGGAGGGGCGAAGGCAGGGAAGGAAACC
CTGCAGTCGAGCTACACACAGGAGCTGGCCTTCTTTGTCCTCAGGCCGTG
GATGGAACAGTTTGGTCTGAAGAAGGTGGGATTTATGTTGACACCTTTGC
CGAAACTGGGGGGGAAGATGGGAGGAGCAGAAGGGTGGTGCTTCTGGAAC
GAGACACACCCCAAAGCCGGAATTGTCCGACGTGTGGTGTTGATGGAGAA
GGGAGGGGTTCGGGGCACATTAGAGCAGGCGCTGGGCTTACCTTTTCTCC
CTGCCTCCACCGAGGGGCGGGTTGAGGTGTCGTACAATGCCTTGAACGCC
CGTCCCTACCATCACCCGGAACACCGCTACTCCTCCCTACAGACGTCCCG
CGTGCCCCTCCTCTCATTCTTCTCCCACCCGTCCACCGCCATTGCCACCG
GTACGCACTACCGAACGTTTGCGGATGTGTGCGCGTCGCAATTACACGTG
CCGCTGGCTCTGGACATCGGGACTTGTCGACAGTTCCCACTCGAGCCTCT
CACCTCCCTCCTCCTCGCGGCCTTTCCAGCCGCAAAACGTGACCCCATGC
TATTGTATCGCTTTTGTCAGGAGGGAGAGGTGGTGGCTTGGGGGTGGCTG
AAGGAGAAGATGCCGATGATCGTGGCAGAGGCGGGGAGGAGGATGAAGGA
GGGAGGGAGGGAAGGAGGTAGGGAGTTGGAGACGAGTAGAAGAAGAATAG
TGCTATAAAGGCCTGCTTCTACGCGGGAA

protein sequence of jgi.p|Nanoce1779_2|590807

>mRNA_4917-protein ID=mRNA_4917-protein|Name=jgi.p|Nanoce1779_2|590807|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MKGIKKLPSPTTSLPTLSSIPSSEPASFLNYVGGGVEEFKPSSPSSLPSF
SPISTSAGAGVVAEGKGRLSPVPTLTPVPLRTKRGGSLSATNIDTSTSTT
SSIASNMTMYGNDTTRSTTTATVTSPAAAAAAAAAAAKATVNGGPASSAG
TKSVVVVVPTRPSSPTTTASNTSTVPFSPPAKSLSRPAPVKTTRFSSSTS
PSRPTVLIDAYVFLRKRELDWLRSLPPAYQAALDYGRTGTSFCAHQHLYC
ARLLLSLIGLRPCVVIPPHDIWREGGAKAGKETLQSSYTQELAFFVLRPW
MEQFGLKKVGFMLTPLPKLGGKMGGAEGWCFWNETHPKAGIVRRVVLMEK
GGVRGTLEQALGLPFLPASTEGRVEVSYNALNARPYHHPEHRYSSLQTSR
VPLLSFFSHPSTAIATGTHYRTFADVCASQLHVPLALDIGTCRQFPLEPL
TSLLLAAFPAAKRDPMLLYRFCQEGEVVAWGWLKEKMPMIVAEAGRRMKE
GGREGGRELETSRRRIVL*

mRNA from alignment at scaffold_12:18753..20431+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4917 ID=mRNA_4917|Name=jgi.p|Nanoce1779_2|590807|organism=Nannochloropsis oceanica|type=mRNA|length=1679bp|location=Sequence derived from alignment at scaffold_12:18753..20431+ (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAAGAGGAGGAGGAGGAGGAGAAAGAGAA
AGAGAAAGATCAGGAGGAGGAAGGGTCTCTTCGGCTTTTTCGGATAAGAA
AATGAAGGGAATTAAGAAGTTGCCCTCGCCTACGACCTCCCTCCCCACCT
TGTCCTCTATCCCCTCTTCGGAGCCTGCCTCCTTTTTGAACTACGTCGGA
GGAGGTGTCGAAGAGTTCAAGCCCTCATCCCCTTCCTCGCTCCCTTCTTT
TTCCCCCATCTCCACTTCTGCTGGAGCAGGAGTAGTTGCGGAAGGCAAAG
GGAGGCTGTCGCCGGTCCCGACGCTGACGCCCGTTCCTCTCCGCACCAAG
CGAGGCGGTTCTCTTTCCGCCACAAACATCGACACCAGCACTAGCACAAC
CAGCAGCATCGCTAGCAACATGACTATGTACGGCAATGACACCACAAGAT
CGACAACGACCGCAACAGTCACGTCCCCAGCAGCAGCAGCAGCAGCAGCT
GCCGCCGCAGCGAAGGCAACAGTCAATGGAGGCCCGGCTTCCTCTGCTGG
CACCAAGTCCGTCGTTGTCGTCGTCCCCACTCGCCCCTCATCCCCCACCA
CCACCGCCAGCAATACCAGCACCGTCCCCTTCTCTCCACCGGCCAAATCC
CTCTCTCGTCCGGCGCCCGTTAAGACTACTCGCTTTTCCTCCTCCACTTC
CCCGTCCCGCCCCACTGTCCTCATCGACGCCTACGTCTTTCTACGTAAGC
GTGAGCTTGACTGGCTTCGTTCCCTTCCACCCGCCTATCAAGCCGCGCTT
GATTACGGCCGTACCGGCACGTCATTCTGCGCCCACCAGCATCTTTACTG
CGCTCGCCTCCTCCTCTCCCTCATCGGCCTCCGCCCGTGCGTCGTGATTC
CTCCTCATGACATCTGGAGGGAAGGAGGGGCGAAGGCAGGGAAGGAAACC
CTGCAGTCGAGCTACACACAGGAGCTGGCCTTCTTTGTCCTCAGGCCGTG
GATGGAACAGTTTGGTCTGAAGAAGGTGGGATTTATGTTGACACCTTTGC
CGAAACTGGGGGGGAAGATGGGAGGAGCAGAAGGGTGGTGCTTCTGGAAC
GAGACACACCCCAAAGCCGGAATTGTCCGACGTGTGGTGTTGATGGAGAA
GGGAGGGGTTCGGGGCACATTAGAGCAGGCGCTGGGCTTACCTTTTCTCC
CTGCCTCCACCGAGGGGCGGGTTGAGGTGTCGTACAATGCCTTGAACGCC
CGTCCCTACCATCACCCGGAACACCGCTACTCCTCCCTACAGACGTCCCG
CGTGCCCCTCCTCTCATTCTTCTCCCACCCGTCCACCGCCATTGCCACCG
GTACGCACTACCGAACGTTTGCGGATGTGTGCGCGTCGCAATTACACGTG
CCGCTGGCTCTGGACATCGGGACTTGTCGACAGTTCCCACTCGAGCCTCT
CACCTCCCTCCTCCTCGCGGCCTTTCCAGCCGCAAAACGTGACCCCATGC
TATTGTATCGCTTTTGTCAGGAGGGAGAGGTGGTGGCTTGGGGGTGGCTG
AAGGAGAAGATGCCGATGATCGTGGCAGAGGCGGGGAGGAGGATGAAGGA
GGGAGGGAGGGAAGGAGGTAGGGAGTTGGAGACGAGTAGAAGAAGAATAG
TGCTATAAAGGCCTGCTTCTACGCGGGAA

Coding sequence (CDS) from alignment at scaffold_12:18753..20431+

>mRNA_4917 ID=mRNA_4917|Name=jgi.p|Nanoce1779_2|590807|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at scaffold_12:18753..20431+ (Nannochloropsis oceanica)
ATGAAGGGAATTAAGAAGTTGCCCTCGCCTACGACCTCCCTCCCCACCTT
GTCCTCTATCCCCTCTTCGGAGCCTGCCTCCTTTTTGAACTACGTCGGAG
GAGGTGTCGAAGAGTTCAAGCCCTCATCCCCTTCCTCGCTCCCTTCTTTT
TCCCCCATCTCCACTTCTGCTGGAGCAGGAGTAGTTGCGGAAGGCAAAGG
GAGGCTGTCGCCGGTCCCGACGCTGACGCCCGTTCCTCTCCGCACCAAGC
GAGGCGGTTCTCTTTCCGCCACAAACATCGACACCAGCACTAGCACAACC
AGCAGCATCGCTAGCAACATGACTATGTACGGCAATGACACCACAAGATC
GACAACGACCGCAACAGTCACGTCCCCAGCAGCAGCAGCAGCAGCAGCTG
CCGCCGCAGCGAAGGCAACAGTCAATGGAGGCCCGGCTTCCTCTGCTGGC
ACCAAGTCCGTCGTTGTCGTCGTCCCCACTCGCCCCTCATCCCCCACCAC
CACCGCCAGCAATACCAGCACCGTCCCCTTCTCTCCACCGGCCAAATCCC
TCTCTCGTCCGGCGCCCGTTAAGACTACTCGCTTTTCCTCCTCCACTTCC
CCGTCCCGCCCCACTGTCCTCATCGACGCCTACGTCTTTCTACGTAAGCG
TGAGCTTGACTGGCTTCGTTCCCTTCCACCCGCCTATCAAGCCGCGCTTG
ATTACGGCCGTACCGGCACGTCATTCTGCGCCCACCAGCATCTTTACTGC
GCTCGCCTCCTCCTCTCCCTCATCGGCCTCCGCCCGTGCGTCGTGATTCC
TCCTCATGACATCTGGAGGGAAGGAGGGGCGAAGGCAGGGAAGGAAACCC
TGCAGTCGAGCTACACACAGGAGCTGGCCTTCTTTGTCCTCAGGCCGTGG
ATGGAACAGTTTGGTCTGAAGAAGGTGGGATTTATGTTGACACCTTTGCC
GAAACTGGGGGGGAAGATGGGAGGAGCAGAAGGGTGGTGCTTCTGGAACG
AGACACACCCCAAAGCCGGAATTGTCCGACGTGTGGTGTTGATGGAGAAG
GGAGGGGTTCGGGGCACATTAGAGCAGGCGCTGGGCTTACCTTTTCTCCC
TGCCTCCACCGAGGGGCGGGTTGAGGTGTCGTACAATGCCTTGAACGCCC
GTCCCTACCATCACCCGGAACACCGCTACTCCTCCCTACAGACGTCCCGC
GTGCCCCTCCTCTCATTCTTCTCCCACCCGTCCACCGCCATTGCCACCGG
TACGCACTACCGAACGTTTGCGGATGTGTGCGCGTCGCAATTACACGTGC
CGCTGGCTCTGGACATCGGGACTTGTCGACAGTTCCCACTCGAGCCTCTC
ACCTCCCTCCTCCTCGCGGCCTTTCCAGCCGCAAAACGTGACCCCATGCT
ATTGTATCGCTTTTGTCAGGAGGGAGAGGTGGTGGCTTGGGGGTGGCTGA
AGGAGAAGATGCCGATGATCGTGGCAGAGGCGGGGAGGAGGATGAAGGAG
GGAGGGAGGGAAGGAGGTAGGGAGTTGGAGACGAGTAGAAGAAGAATAGT
GCTATAA

Synonyms

Publications