jgi.p|Nanoce1779_2|590801, mRNA_4915 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590801
Unique NamemRNA_4915
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length777
Alignment locationscaffold_12:13389..14165 +

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Properties
Property NameValue
TranscriptId590887
TrackFilteredModels2
ProteinId590801
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:13389..14165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590801gene_4915Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590801mRNA_4915-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4915CDS_4915Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4915 ID=mRNA_4915|Name=jgi.p|Nanoce1779_2|590801|organism=Nannochloropsis oceanica|type=mRNA|length=777bp
TGCTGCTGCTGCTGCTGGTGGTGGTGGTATATGTGGCTGTGTCTGCCTCT
GCTGTTCCTGCTGCTAGCGTGCCTTGCAAATGCTCCACGGCGGCGGCTCC
AGCCCCCGTTGGTGCACGCTGCTGCTCCTGCTGCTGCTGCTTCTTGACCG
AGGTTGACACTGAGGTCGAGGACGAAGGAGGGGGGTTGGCAGGCCAAGGC
GCACTCATACTACCAGCCACACTGCTGCTGTATGCGGCAGGTGATCCATC
AGTGTATTTGGTGATGATAATTTCACCGCTCAGACTGCTTGACAGTTCCC
CCGCTCCGTCTGGAGGCCCCACAGGCAAGCCTCCCACCCCTGCTGGCGTC
TTGTGATCGTCCTGCTGGCCAGGATACGGCTGCTGCAGTTGATGCTGGGG
GTGATGGGGATGCTGCTGCTGATGTGCGTGGTGATGGCCATGTGGTGGGT
TTGTGTACAGCGCCGGTTGTGGTTGACCTGCGATGGTGTTGCCCATGGGC
CCTGCTCCTGCTGCTACCCCTCTTGCCTCGTCCCCTTCGTTAGAGCGCTG
CTGTCGCTGCTGAACTTGGGGCTGCTGCTGCCCGCCCCGCACGATACTGG
CAGCTAATCCTGCCCATCCTGAAGGCATGTTGTCGCTCTGGTGGTGACTT
TTGTTTTAGGTATGGGTGTTTGTTCCGCCCGCTATCCGTTGCGCGACTGA
GTTTGTGTGCGTAACGCAGCTGTTCTGGCTGACCTTGTCTCCCGGGTTTG
GTAAACGCACCCAGGTATCAAGACTGT
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protein sequence of jgi.p|Nanoce1779_2|590801

>mRNA_4915-protein ID=mRNA_4915-protein|Name=jgi.p|Nanoce1779_2|590801|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MLGVMGMLLLMCVVMAMWWVCVQRRLWLTCDGVAHGPCSCCYPSCLVPFV
RALLSLLNLGLLLPAPHDTGS*
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mRNA from alignment at scaffold_12:13389..14165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4915 ID=mRNA_4915|Name=jgi.p|Nanoce1779_2|590801|organism=Nannochloropsis oceanica|type=mRNA|length=777bp|location=Sequence derived from alignment at scaffold_12:13389..14165+ (Nannochloropsis oceanica)
TGCTGCTGCTGCTGCTGGTGGTGGTGGTATATGTGGCTGTGTCTGCCTCT
GCTGTTCCTGCTGCTAGCGTGCCTTGCAAATGCTCCACGGCGGCGGCTCC
AGCCCCCGTTGGTGCACGCTGCTGCTCCTGCTGCTGCTGCTTCTTGACCG
AGGTTGACACTGAGGTCGAGGACGAAGGAGGGGGGTTGGCAGGCCAAGGC
GCACTCATACTACCAGCCACACTGCTGCTGTATGCGGCAGGTGATCCATC
AGTGTATTTGGTGATGATAATTTCACCGCTCAGACTGCTTGACAGTTCCC
CCGCTCCGTCTGGAGGCCCCACAGGCAAGCCTCCCACCCCTGCTGGCGTC
TTGTGATCGTCCTGCTGGCCAGGATACGGCTGCTGCAGTTGATGCTGGGG
GTGATGGGGATGCTGCTGCTGATGTGCGTGGTGATGGCCATGTGGTGGGT
TTGTGTACAGCGCCGGTTGTGGTTGACCTGCGATGGTGTTGCCCATGGGC
CCTGCTCCTGCTGCTACCCCTCTTGCCTCGTCCCCTTCGTTAGAGCGCTG
CTGTCGCTGCTGAACTTGGGGCTGCTGCTGCCCGCCCCGCACGATACTGG
CAGCTAATCCTGCCCATCCTGAAGGCATGTTGTCGCTCTGGTGGTGACTT
TTGTTTTAGGTATGGGTGTTTGTTCCGCCCGCTATCCGTTGCGCGACTGA
GTTTGTGTGCGTAACGCAGCTGTTCTGGCTGACCTTGTCTCCCGGGTTTG
GTAAACGCACCCAGGTATCAAGACTGT
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Coding sequence (CDS) from alignment at scaffold_12:13389..14165+

>mRNA_4915 ID=mRNA_4915|Name=jgi.p|Nanoce1779_2|590801|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_12:13389..14165+ (Nannochloropsis oceanica)
ATGCTGGGGGTGATGGGGATGCTGCTGCTGATGTGCGTGGTGATGGCCAT
GTGGTGGGTTTGTGTACAGCGCCGGTTGTGGTTGACCTGCGATGGTGTTG
CCCATGGGCCCTGCTCCTGCTGCTACCCCTCTTGCCTCGTCCCCTTCGTT
AGAGCGCTGCTGTCGCTGCTGAACTTGGGGCTGCTGCTGCCCGCCCCGCA
CGATACTGGCAGCTAA
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Synonyms
Publications