jgi.p|Nanoce1779_2|590800, mRNA_4914 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590800
Unique NamemRNA_4914
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1468
Alignment locationscaffold_12:12064..13531 +

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Properties
Property NameValue
TranscriptId590886
TrackFilteredModels2
ProteinId590800
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:12064..13531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590800gene_4914Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590800mRNA_4914-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4914CDS_4914Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4914 ID=mRNA_4914|Name=jgi.p|Nanoce1779_2|590800|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGC
CGGGGGCCGGAACCTTGAACCGCCACGTGGAGGACGGGAAAGAGGACGGG
TTGGAAGCGAGCTCGAAGAAGTTGTCGCGGGAAGCGGCCGGGGCAGCGTG
GAGCATGCTGGAAGGAGGGAGGCCTAAAATGTCAACCAGCCGCTTCATTT
GGTCGTACTGATCCACACCACCAAACAGGGGCTCACCCGTGTGCATCTCC
ACCAGGACACACCCCAAGCTCCACATATCAATGGCCACAGAATAGGGCAA
TCCGAGCATCACTTCCGGGGAGCGATAAAAACGCGATTGGATGTAAGAAT
ACATGCGTTTGTGACTCCTGCATGAAGATCCAAAGTCGATGACTTTGATG
CCGGACCGCTTGGGGTGGCGGAGCAGAATGTTCTCGGGCTTGAGATCGCA
GTGAATAATGTCCACGTCGGGCCGAGCCAGGAACTGAAGGGCCTTGAGGA
TTTGCTTTGTGAATTTCCGGAGGAGCGTCAGGGAGACACCTGCGAATTTG
GTGTATTTAAGCAGGTCGTAAAGATTGTAGGAAAGCATCTCAAAGACCAA
GCATTGGTGGCCCCGGTGGATAAAGTGATGCTGCAGACGGACTAAGTTGA
ACTCGTCGTTCTTATCCTTGACTCGCAGCGTCTGCAGTAGCTCTACCTCC
GTCTTGGCCTGCAGCATGAAGGGTTTTCTGCTCTTGATGATTTTAACCGC
TACTTCTCGTCCCGTGGCACGGTCAACTCCTCGCACCACCTGCCCAAAGC
TACCCTTGCCGATCCTGTTCTTCAGCAAGTACCGGTCTTGGAGAAGCTCG
TCCCTCTCAAAGAGATAATCGTAGTGCTCGTCATCCCAGCCGTTGTTGTA
AACTCCTTTGCCAACCGTTGGTGCTGGGGCCGCGGCGGGGGCGATTGGGG
GTTGGCGGTGTGAAGATGAGTAGGACATGGAGGGGGCAGCGTGTAAGGGA
GCGGTCGAAAGGAGGGAGGCATCGGCTGTCTTTTGGGGATGGGCAAGATG
CTGCAGAGCTCCTGCAGCGGTACTAGCAGCGCTCCCTTCACCGCTGCTGC
TGCTCTTGACGTGCTGCTCCTGCTTGGAGGAAGACGTAGATGTGGACATG
GCCGCGGAGACCGCTGCCTCGTCTTGTTGCTGGAGTTGCCGTTGAGCTTT
TCTCTCGTAGTATTGGGTGTTGATGGCCTTATAGGTATCAATCAATTGAA
CCGAGAGACGGTTCAAAGGACGTGTGTGCGGCGGGCGGCGTCTCCTACGT
GCCCCACAGCCACCGGTGCTACCATTGCTGCTGCTGCTGCTGGTGGTGGT
GGTATATGTGGCTGTGTCTGCCTCTGCTGTTCCTGCTGCTAGCGTGCCTT
GCAAATGCTCCACGGCGGCGGCTCCAGCCCCCGTTGGTGCACGCTGCTGC
TCCTGCTGCTGCTGCTTC
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protein sequence of jgi.p|Nanoce1779_2|590800

>mRNA_4914-protein ID=mRNA_4914-protein|Name=jgi.p|Nanoce1779_2|590800|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MGKMLQSSCSGTSSAPFTAAAALDVLLLLGGRRRCGHGRGDRCLVLLLEL
PLSFSLVVLGVDGLIGINQLNRETVQRTCVRRAASPTCPTATGATIAAAA
AGGGGICGCVCLCCSCC*
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mRNA from alignment at scaffold_12:12064..13531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4914 ID=mRNA_4914|Name=jgi.p|Nanoce1779_2|590800|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp|location=Sequence derived from alignment at scaffold_12:12064..13531+ (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGC
CGGGGGCCGGAACCTTGAACCGCCACGTGGAGGACGGGAAAGAGGACGGG
TTGGAAGCGAGCTCGAAGAAGTTGTCGCGGGAAGCGGCCGGGGCAGCGTG
GAGCATGCTGGAAGGAGGGAGGCCTAAAATGTCAACCAGCCGCTTCATTT
GGTCGTACTGATCCACACCACCAAACAGGGGCTCACCCGTGTGCATCTCC
ACCAGGACACACCCCAAGCTCCACATATCAATGGCCACAGAATAGGGCAA
TCCGAGCATCACTTCCGGGGAGCGATAAAAACGCGATTGGATGTAAGAAT
ACATGCGTTTGTGACTCCTGCATGAAGATCCAAAGTCGATGACTTTGATG
CCGGACCGCTTGGGGTGGCGGAGCAGAATGTTCTCGGGCTTGAGATCGCA
GTGAATAATGTCCACGTCGGGCCGAGCCAGGAACTGAAGGGCCTTGAGGA
TTTGCTTTGTGAATTTCCGGAGGAGCGTCAGGGAGACACCTGCGAATTTG
GTGTATTTAAGCAGGTCGTAAAGATTGTAGGAAAGCATCTCAAAGACCAA
GCATTGGTGGCCCCGGTGGATAAAGTGATGCTGCAGACGGACTAAGTTGA
ACTCGTCGTTCTTATCCTTGACTCGCAGCGTCTGCAGTAGCTCTACCTCC
GTCTTGGCCTGCAGCATGAAGGGTTTTCTGCTCTTGATGATTTTAACCGC
TACTTCTCGTCCCGTGGCACGGTCAACTCCTCGCACCACCTGCCCAAAGC
TACCCTTGCCGATCCTGTTCTTCAGCAAGTACCGGTCTTGGAGAAGCTCG
TCCCTCTCAAAGAGATAATCGTAGTGCTCGTCATCCCAGCCGTTGTTGTA
AACTCCTTTGCCAACCGTTGGTGCTGGGGCCGCGGCGGGGGCGATTGGGG
GTTGGCGGTGTGAAGATGAGTAGGACATGGAGGGGGCAGCGTGTAAGGGA
GCGGTCGAAAGGAGGGAGGCATCGGCTGTCTTTTGGGGATGGGCAAGATG
CTGCAGAGCTCCTGCAGCGGTACTAGCAGCGCTCCCTTCACCGCTGCTGC
TGCTCTTGACGTGCTGCTCCTGCTTGGAGGAAGACGTAGATGTGGACATG
GCCGCGGAGACCGCTGCCTCGTCTTGTTGCTGGAGTTGCCGTTGAGCTTT
TCTCTCGTAGTATTGGGTGTTGATGGCCTTATAGGTATCAATCAATTGAA
CCGAGAGACGGTTCAAAGGACGTGTGTGCGGCGGGCGGCGTCTCCTACGT
GCCCCACAGCCACCGGTGCTACCATTGCTGCTGCTGCTGCTGGTGGTGGT
GGTATATGTGGCTGTGTCTGCCTCTGCTGTTCCTGCTGCTAGCGTGCCTT
GCAAATGCTCCACGGCGGCGGCTCCAGCCCCCGTTGGTGCACGCTGCTGC
TCCTGCTGCTGCTGCTTC
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Coding sequence (CDS) from alignment at scaffold_12:12064..13531+

>mRNA_4914 ID=mRNA_4914|Name=jgi.p|Nanoce1779_2|590800|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_12:12064..13531+ (Nannochloropsis oceanica)
ATGGGCAAGATGCTGCAGAGCTCCTGCAGCGGTACTAGCAGCGCTCCCTT
CACCGCTGCTGCTGCTCTTGACGTGCTGCTCCTGCTTGGAGGAAGACGTA
GATGTGGACATGGCCGCGGAGACCGCTGCCTCGTCTTGTTGCTGGAGTTG
CCGTTGAGCTTTTCTCTCGTAGTATTGGGTGTTGATGGCCTTATAGGTAT
CAATCAATTGAACCGAGAGACGGTTCAAAGGACGTGTGTGCGGCGGGCGG
CGTCTCCTACGTGCCCCACAGCCACCGGTGCTACCATTGCTGCTGCTGCT
GCTGGTGGTGGTGGTATATGTGGCTGTGTCTGCCTCTGCTGTTCCTGCTG
CTAG
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Synonyms
Publications