jgi.p|Nanoce1779_2|623340, mRNA_4913 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|623340
Unique NamemRNA_4913
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1122
Alignment locationscaffold_12:11659..12780 -

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Properties
Property NameValue
TranscriptId623426
TrackFilteredModels2
ProteinId623340
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:11659..12780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623340gene_4913Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4913CDS_4913Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|623340mRNA_4913-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4913 ID=mRNA_4913|Name=jgi.p|Nanoce1779_2|623340|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp
ATGCTGCAGGCCAAGACGGAGGTAGAGCTACTGCAGACGCTGCGAGTCAA
GGATAAGAACGACGAGTTCAACTTAGTCCGTCTGCAGCATCACTTTATCC
ACCGGGGCCACCAATGCTTGGTCTTTGAGATGCTTTCCTACAATCTTTAC
GACCTGCTTAAATACACCAAATTCGCAGGTGTCTCCCTGACGCTCCTCCG
GAAATTCACAAAGCAAATCCTCAAGGCCCTTCAGTTCCTGGCTCGGCCCG
ACGTGGACATTATTCACTGCGATCTCAAGCCCGAGAACATTCTGCTCCGC
CACCCCAAGCGGTCCGGCATCAAAGTCATCGACTTTGGATCTTCATGCAG
GAGTCACAAACGCATGTATTCTTACATCCAATCGCGTTTTTATCGCTCCC
CGGAAGTGATGCTCGGATTGCCCTATTCTGTGGCCATTGATATGTGGAGC
TTGGGGTGTGTCCTGGTGGAGATGCACACGGGTGAGCCCCTGTTTGGTGG
TGTGGATCAGTACGACCAAATGAAGCGGCTGGTTGACATTTTAGGCCTCC
CTCCTTCCAGCATGCTCCACGCTGCCCCGGCCGCTTCCCGCGACAACTTC
TTCGAGCTCGCTTCCAACCCGTCCTCTTTCCCGTCCTCCACGTGGCGGTT
CAAGGTTCCGGCCCCCGGCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCACCCCTTCCAACCTCCCGTCCTCTGCCTCGCCC
TACGCCAAACTGGCCGATATCCTCGGTGTCACAACAGGTGGACCGTCAGG
AAGACGAGCGAACGACCCCGGACACACTGTCCCTCATTACCAAGCCTTCC
TCGACCTCATTTTGAAGATGTTGCATCTAGATCCCGCCATGAGGATTACG
CCCACCGAGGCCCTGCGGCACCCGTTCCTCCAGGCCGGGGATGGAGGACA
GGGCATGGGGGAGGGATTGGGGTCGACAAACAAGACGGAGGGAGGGAAGG
AGGGACGGGCGCAGCAGCCCAGGTCACCTAGAGTGACGGCGACAACAGCG
AGTGTAGCACACCATGGCCCGCCGATGCCTTTATTGGCTTCTTCGGCGTT
GGATGCGGGGACGCAGACGTAG
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protein sequence of jgi.p|Nanoce1779_2|623340

>mRNA_4913-protein ID=mRNA_4913-protein|Name=jgi.p|Nanoce1779_2|623340|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MLQAKTEVELLQTLRVKDKNDEFNLVRLQHHFIHRGHQCLVFEMLSYNLY
DLLKYTKFAGVSLTLLRKFTKQILKALQFLARPDVDIIHCDLKPENILLR
HPKRSGIKVIDFGSSCRSHKRMYSYIQSRFYRSPEVMLGLPYSVAIDMWS
LGCVLVEMHTGEPLFGGVDQYDQMKRLVDILGLPPSSMLHAAPAASRDNF
FELASNPSSFPSSTWRFKVPAPGTSSSSSSSSSSSSSSSTPSNLPSSASP
YAKLADILGVTTGGPSGRRANDPGHTVPHYQAFLDLILKMLHLDPAMRIT
PTEALRHPFLQAGDGGQGMGEGLGSTNKTEGGKEGRAQQPRSPRVTATTA
SVAHHGPPMPLLASSALDAGTQT*
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mRNA from alignment at scaffold_12:11659..12780-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4913 ID=mRNA_4913|Name=jgi.p|Nanoce1779_2|623340|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp|location=Sequence derived from alignment at scaffold_12:11659..12780- (Nannochloropsis oceanica)
ATGCTGCAGGCCAAGACGGAGGTAGAGCTACTGCAGACGCTGCGAGTCAA
GGATAAGAACGACGAGTTCAACTTAGTCCGTCTGCAGCATCACTTTATCC
ACCGGGGCCACCAATGCTTGGTCTTTGAGATGCTTTCCTACAATCTTTAC
GACCTGCTTAAATACACCAAATTCGCAGGTGTCTCCCTGACGCTCCTCCG
GAAATTCACAAAGCAAATCCTCAAGGCCCTTCAGTTCCTGGCTCGGCCCG
ACGTGGACATTATTCACTGCGATCTCAAGCCCGAGAACATTCTGCTCCGC
CACCCCAAGCGGTCCGGCATCAAAGTCATCGACTTTGGATCTTCATGCAG
GAGTCACAAACGCATGTATTCTTACATCCAATCGCGTTTTTATCGCTCCC
CGGAAGTGATGCTCGGATTGCCCTATTCTGTGGCCATTGATATGTGGAGC
TTGGGGTGTGTCCTGGTGGAGATGCACACGGGTGAGCCCCTGTTTGGTGG
TGTGGATCAGTACGACCAAATGAAGCGGCTGGTTGACATTTTAGGCCTCC
CTCCTTCCAGCATGCTCCACGCTGCCCCGGCCGCTTCCCGCGACAACTTC
TTCGAGCTCGCTTCCAACCCGTCCTCTTTCCCGTCCTCCACGTGGCGGTT
CAAGGTTCCGGCCCCCGGCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCACCCCTTCCAACCTCCCGTCCTCTGCCTCGCCC
TACGCCAAACTGGCCGATATCCTCGGTGTCACAACAGGTGGACCGTCAGG
AAGACGAGCGAACGACCCCGGACACACTGTCCCTCATTACCAAGCCTTCC
TCGACCTCATTTTGAAGATGTTGCATCTAGATCCCGCCATGAGGATTACG
CCCACCGAGGCCCTGCGGCACCCGTTCCTCCAGGCCGGGGATGGAGGACA
GGGCATGGGGGAGGGATTGGGGTCGACAAACAAGACGGAGGGAGGGAAGG
AGGGACGGGCGCAGCAGCCCAGGTCACCTAGAGTGACGGCGACAACAGCG
AGTGTAGCACACCATGGCCCGCCGATGCCTTTATTGGCTTCTTCGGCGTT
GGATGCGGGGACGCAGACGTAG
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Coding sequence (CDS) from alignment at scaffold_12:11659..12780-

>mRNA_4913 ID=mRNA_4913|Name=jgi.p|Nanoce1779_2|623340|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_12:11659..12780- (Nannochloropsis oceanica)
ATGCTGCAGGCCAAGACGGAGGTAGAGCTACTGCAGACGCTGCGAGTCAA
GGATAAGAACGACGAGTTCAACTTAGTCCGTCTGCAGCATCACTTTATCC
ACCGGGGCCACCAATGCTTGGTCTTTGAGATGCTTTCCTACAATCTTTAC
GACCTGCTTAAATACACCAAATTCGCAGGTGTCTCCCTGACGCTCCTCCG
GAAATTCACAAAGCAAATCCTCAAGGCCCTTCAGTTCCTGGCTCGGCCCG
ACGTGGACATTATTCACTGCGATCTCAAGCCCGAGAACATTCTGCTCCGC
CACCCCAAGCGGTCCGGCATCAAAGTCATCGACTTTGGATCTTCATGCAG
GAGTCACAAACGCATGTATTCTTACATCCAATCGCGTTTTTATCGCTCCC
CGGAAGTGATGCTCGGATTGCCCTATTCTGTGGCCATTGATATGTGGAGC
TTGGGGTGTGTCCTGGTGGAGATGCACACGGGTGAGCCCCTGTTTGGTGG
TGTGGATCAGTACGACCAAATGAAGCGGCTGGTTGACATTTTAGGCCTCC
CTCCTTCCAGCATGCTCCACGCTGCCCCGGCCGCTTCCCGCGACAACTTC
TTCGAGCTCGCTTCCAACCCGTCCTCTTTCCCGTCCTCCACGTGGCGGTT
CAAGGTTCCGGCCCCCGGCACCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCACCCCTTCCAACCTCCCGTCCTCTGCCTCGCCC
TACGCCAAACTGGCCGATATCCTCGGTGTCACAACAGGTGGACCGTCAGG
AAGACGAGCGAACGACCCCGGACACACTGTCCCTCATTACCAAGCCTTCC
TCGACCTCATTTTGAAGATGTTGCATCTAGATCCCGCCATGAGGATTACG
CCCACCGAGGCCCTGCGGCACCCGTTCCTCCAGGCCGGGGATGGAGGACA
GGGCATGGGGGAGGGATTGGGGTCGACAAACAAGACGGAGGGAGGGAAGG
AGGGACGGGCGCAGCAGCCCAGGTCACCTAGAGTGACGGCGACAACAGCG
AGTGTAGCACACCATGGCCCGCCGATGCCTTTATTGGCTTCTTCGGCGTT
GGATGCGGGGACGCAGACGTAG
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Synonyms
Publications