jgi.p|Nanoce1779_2|590796, mRNA_4912 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|590796
Unique Name	mRNA_4912
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2084
Alignment location	scaffold_12:9633..11716 +

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Properties


Property Name	Value
TranscriptId	590882
Track	FilteredModels2
ProteinId	590796

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_12	supercontig	scaffold_12:9633..11716 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590796	gene_4912	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|590796	mRNA_4912-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4912	CDS_4912	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_12:9633..11716+
coding sequence from alignment at scaffold_12:9633..11716+

mRNA sequence

>mRNA_4912 ID=mRNA_4912|Name=jgi.p|Nanoce1779_2|590796|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp
TCCCTCGCATCCATCTCTGATTTGGCTTTTTCGTTTCCTTGCACGAATCT
CCTTCCCTTTTTTTACATGTCGATTGTTAAGGGTACATGAATTTATTTAT
AAACAGGTAGATTAAGATAAAATAATATATAAATATGAAATATGAAATTA
AATAAATAAATGTTCTTACCCATGCCATAGTGCAGCACAGCTTCCTCCAG
CCTGTATATCAAAGGCTCAGTCCGCAACACGGCACGATCATACGACCTGA
AAGGCACCTAAAGAATTCCATGTACGTATATTTATAATATCGATCAAAGG
AGTAAGCCTTCTCTTATTCCTCTCTTTCTATATTTCCTTCTCACCCTCCG
TCCTCCCCTCCCTTCGCAGTGGTTCGTTACCTCCTGCATCACTTCCAAGT
CGTCCGTTGTGAGAGTTGGCACGGCTGCCTTCATTTTCTTTGCGGTCTCG
GGCTTAAGGTGTGCCTGACGGTAGAAGAGCTTCGGGGATGACGGAGGGAG
AGAGAAAGAAAGGGAGGAAGGGAGGAAGGGAGGACGGGAGGAAGAGAGAA
GAGAGGGAGTGAGGTAGGAAAGGGTGAGTGCTGTTGCTCGCCAATGTTCT
GAGACCGCTCATAAAATTTGGAGATTGTGTCTAAGCGTGGTCACATTTGG
CCGTTAACGACAAAATGAGCAAGCGTTTCAACGCCGCTCTCCTCCCCTTT
CCTACCTACCTGGGCGACATAGGCATTTGTCAAACCCGTCTCGACCGCAA
TTTCGTCGAATGTTAAGCCTGCCTTTTTCTTGGCTGCTAACAGGTTAGAT
ACATGGAAGGCTTTGTCTTCCTCTGCAAAGGCTGTGGCGAGACGACGGGT
TGCGTTGCTGGTGGTGGGAAGGAGGGACGGACGGAGAGAGGACGAGGACA
CATGACGAGACACGGCAAGGCGGAAGGATGACAACATTTATGTTACTTGA
GACACTTTATTGAATACGATTGATAAGAGGTTATGTTTCTGTGTTGTTAC
GGGAGGATGGGCGGGCAGAGAGGTTAAATGCCTTGTAGAACGAGAGTATC
TTAAGCATTGCTGGGGGGGGGGGAAAATTCCTTTGAAAGGCTGGCATGCC
GCAGACATTGTAGAAAAGCGCAAAGAACACAAACAGTTATCCGTTGATGA
GATTTTGCGTTTGATTTTGGCGTAATTGTATGTCGAAGGAGAGAGATACA
CAGAACAGACGAGCATTGAAAAGTAGGCAGGACGTTGACGAGCTCCGTCC
ACGGCCGAGCAATCCATCCACCAAGACAAGTCAACGCAAGCGGGGGGCAT
GAGAAAGGCGACTGCAAGGTAATGATGCTGCTAATGCCATTGCTAGTGTC
ATCGCACACTGTCCATGCAAGTGGTAAGAAAGGAAGGGGAAGAGCCACTT
GTTCGTCCCATCGCCGTAATCCCATGAATTACTCGCTCTTCCCGTACGCC
CCCATACGTCCCACTTATACTACAAGGAACGAAGCAAAAAAAAAAGTCTT
CGCTTTTCTTGAGGACGTTCTTCTTTGTGATTATATATTCTGTCTCCAAG
AGACAAAATGGACGAATGGTCTACTTTCCCCTTCTCTGTATCCCTTCCTC
CCACCATTCTCTTCTCGATTGAAAGCACATAGTAGACGAATTACTCGATT
CACAATACTACTACTGCACACACGCCACACACACCTACCGCACACAAATC
TCCTCCCACCCACATAACTTCATTCAGGTCCCGCTGATGATGACGGACGT
TTATAATACGCCTATCTCTCTTTGGCACTTCAAAAGCGTCATACCTTTCC
TCCACACCCATATCCATAGATGGGATCAGAACAGGCATTTTGTCTCTACT
CTCTCTGTCCTTTTGTTCTCAATCCTCCATCCCCTCCCCCCCTCTCTCTT
TTTTCTTCTTATCCTGTTGCTGAGGTTAATATGTGTGAAAATGAAAGAAC
AAATAAATGAGTACGTCTACAGTACATATATATAGCCCTACACTGCTACT
CTATACTTATTCATCTGCTTCCCTCCCTACGTCTGCGTCCCCGCATCCAA
CGCCGAAGAAGCCAATAAAGGCATCGGCGGGCCA

protein sequence of jgi.p|Nanoce1779_2|590796

>mRNA_4912-protein ID=mRNA_4912-protein|Name=jgi.p|Nanoce1779_2|590796|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MMLLMPLLVSSHTVHASGKKGRGRATCSSHRRNPMNYSLFPYAPIRPTYT
TRNEAKKKVFAFLEDVLLCDYIFCLQETKWTNGLLSPSLYPFLPPFSSRL
KAHSRRITRFTILLLHTRHTHLPHTNLLPPT*

mRNA from alignment at scaffold_12:9633..11716+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4912 ID=mRNA_4912|Name=jgi.p|Nanoce1779_2|590796|organism=Nannochloropsis oceanica|type=mRNA|length=2084bp|location=Sequence derived from alignment at scaffold_12:9633..11716+ (Nannochloropsis oceanica)
TCCCTCGCATCCATCTCTGATTTGGCTTTTTCGTTTCCTTGCACGAATCT
CCTTCCCTTTTTTTACATGTCGATTGTTAAGGGTACATGAATTTATTTAT
AAACAGGTAGATTAAGATAAAATAATATATAAATATGAAATATGAAATTA
AATAAATAAATGTTCTTACCCATGCCATAGTGCAGCACAGCTTCCTCCAG
CCTGTATATCAAAGGCTCAGTCCGCAACACGGCACGATCATACGACCTGA
AAGGCACCTAAAGAATTCCATGTACGTATATTTATAATATCGATCAAAGG
AGTAAGCCTTCTCTTATTCCTCTCTTTCTATATTTCCTTCTCACCCTCCG
TCCTCCCCTCCCTTCGCAGTGGTTCGTTACCTCCTGCATCACTTCCAAGT
CGTCCGTTGTGAGAGTTGGCACGGCTGCCTTCATTTTCTTTGCGGTCTCG
GGCTTAAGGTGTGCCTGACGGTAGAAGAGCTTCGGGGATGACGGAGGGAG
AGAGAAAGAAAGGGAGGAAGGGAGGAAGGGAGGACGGGAGGAAGAGAGAA
GAGAGGGAGTGAGGTAGGAAAGGGTGAGTGCTGTTGCTCGCCAATGTTCT
GAGACCGCTCATAAAATTTGGAGATTGTGTCTAAGCGTGGTCACATTTGG
CCGTTAACGACAAAATGAGCAAGCGTTTCAACGCCGCTCTCCTCCCCTTT
CCTACCTACCTGGGCGACATAGGCATTTGTCAAACCCGTCTCGACCGCAA
TTTCGTCGAATGTTAAGCCTGCCTTTTTCTTGGCTGCTAACAGGTTAGAT
ACATGGAAGGCTTTGTCTTCCTCTGCAAAGGCTGTGGCGAGACGACGGGT
TGCGTTGCTGGTGGTGGGAAGGAGGGACGGACGGAGAGAGGACGAGGACA
CATGACGAGACACGGCAAGGCGGAAGGATGACAACATTTATGTTACTTGA
GACACTTTATTGAATACGATTGATAAGAGGTTATGTTTCTGTGTTGTTAC
GGGAGGATGGGCGGGCAGAGAGGTTAAATGCCTTGTAGAACGAGAGTATC
TTAAGCATTGCTGGGGGGGGGGGAAAATTCCTTTGAAAGGCTGGCATGCC
GCAGACATTGTAGAAAAGCGCAAAGAACACAAACAGTTATCCGTTGATGA
GATTTTGCGTTTGATTTTGGCGTAATTGTATGTCGAAGGAGAGAGATACA
CAGAACAGACGAGCATTGAAAAGTAGGCAGGACGTTGACGAGCTCCGTCC
ACGGCCGAGCAATCCATCCACCAAGACAAGTCAACGCAAGCGGGGGGCAT
GAGAAAGGCGACTGCAAGGTAATGATGCTGCTAATGCCATTGCTAGTGTC
ATCGCACACTGTCCATGCAAGTGGTAAGAAAGGAAGGGGAAGAGCCACTT
GTTCGTCCCATCGCCGTAATCCCATGAATTACTCGCTCTTCCCGTACGCC
CCCATACGTCCCACTTATACTACAAGGAACGAAGCAAAAAAAAAAGTCTT
CGCTTTTCTTGAGGACGTTCTTCTTTGTGATTATATATTCTGTCTCCAAG
AGACAAAATGGACGAATGGTCTACTTTCCCCTTCTCTGTATCCCTTCCTC
CCACCATTCTCTTCTCGATTGAAAGCACATAGTAGACGAATTACTCGATT
CACAATACTACTACTGCACACACGCCACACACACCTACCGCACACAAATC
TCCTCCCACCCACATAACTTCATTCAGGTCCCGCTGATGATGACGGACGT
TTATAATACGCCTATCTCTCTTTGGCACTTCAAAAGCGTCATACCTTTCC
TCCACACCCATATCCATAGATGGGATCAGAACAGGCATTTTGTCTCTACT
CTCTCTGTCCTTTTGTTCTCAATCCTCCATCCCCTCCCCCCCTCTCTCTT
TTTTCTTCTTATCCTGTTGCTGAGGTTAATATGTGTGAAAATGAAAGAAC
AAATAAATGAGTACGTCTACAGTACATATATATAGCCCTACACTGCTACT
CTATACTTATTCATCTGCTTCCCTCCCTACGTCTGCGTCCCCGCATCCAA
CGCCGAAGAAGCCAATAAAGGCATCGGCGGGCCA

Coding sequence (CDS) from alignment at scaffold_12:9633..11716+

>mRNA_4912 ID=mRNA_4912|Name=jgi.p|Nanoce1779_2|590796|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_12:9633..11716+ (Nannochloropsis oceanica)
ATGATGCTGCTAATGCCATTGCTAGTGTCATCGCACACTGTCCATGCAAG
TGGTAAGAAAGGAAGGGGAAGAGCCACTTGTTCGTCCCATCGCCGTAATC
CCATGAATTACTCGCTCTTCCCGTACGCCCCCATACGTCCCACTTATACT
ACAAGGAACGAAGCAAAAAAAAAAGTCTTCGCTTTTCTTGAGGACGTTCT
TCTTTGTGATTATATATTCTGTCTCCAAGAGACAAAATGGACGAATGGTC
TACTTTCCCCTTCTCTGTATCCCTTCCTCCCACCATTCTCTTCTCGATTG
AAAGCACATAGTAGACGAATTACTCGATTCACAATACTACTACTGCACAC
ACGCCACACACACCTACCGCACACAAATCTCCTCCCACCCACATAA

Synonyms

Publications