jgi.p|Nanoce1779_2|647529, mRNA_4909 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|647529
Unique NamemRNA_4909
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1096
Alignment locationscaffold_12:655..2481 -

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Properties
Property NameValue
TranscriptId647615
TrackFilteredModels2
ProteinId647529
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_12supercontigscaffold_12:655..2481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|647529gene_4909Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|647529mRNA_4909-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4909CDS_4909Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4909 ID=mRNA_4909|Name=jgi.p|Nanoce1779_2|647529|organism=Nannochloropsis oceanica|type=mRNA|length=1096bp
TCATCAACGGTCGGCGCCTTCCATCGCGCGCTCTACCGAGGGCTGATGCG
GAGGGAAGGAGGGAGAGAGGGAGGGGTAGGGGTGGGAGGGAAGGATCTCA
GAAAGATTCAAACCCTGACGTTGAGCCAATTGGCAGCAATTTTGTGGGGA
CTTGCAGCAATGGGGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGAGGGAG
AGATGAGCGGGTCTTTCGACGAGTGCTGTCTGAGGCCTGTCTAAGGTTGC
AGGGACATGGGCCAGGACCTTTCTCGGCACCTGCAGCAGCAGCAGCAGCA
AGGGGGAGTATTGGCGGAAATGAGGAGGAGGGAAGGGGAGGATGCCTAAA
AGTGAAAGGAGACGGAAGTAGATGAAGAGGAGATGGAGGAGGAAGTGGTG
CCGAGGCTGGAGTGTGACGTGGATGCCCTGACGGTCTACTCTCGCTTGAG
CCAGGCAGGATTATACTACGCATCGCTGTCCTCTTCCTCCCTCCCTCCCT
TCCTTCCTTCCTCATCCTCCTCGAGACAGCAGTTGGTCGAGCGGTTCTTA
ATGCTGGTCCGGAGGTATCGGGAGCAGTGCTTGGGGGAGGGAGGGGGGCA
GGGAGGGATGGAAGAAGGGATGGCGATGATGACGACGCCTGAGGCATGGG
CCTTGATGAAGAACATGAGGATAGGATTGGAGGAGAGGGGGTGGAGGTGC
GAGGGTGAAGGGGAGGGAGGAGGGGAGGGAGGGAGGGGGAGGGTGGGGTG
GCTTGGAGAGCCGGATTTGGTGATTTTGAAGCCGGGGAGGGAGGGAGGGA
GGGAGGGGGAGGGGGAGGCGATTGCGGTTATGGTTGTATCGCCTGGGCAG
TACTTTCAAGGTGGCGTTGAATACGACGAGGAAGAGGAAGGGGAAAGGGA
GGGGGAGGGCGGGAAGGAGGGAGGGCGGAAGTCGTCTTTGATGCGGGTCT
TCGCGGCCGGCAAGAGTCGGATCGAGGAGCTGAGGGAGGGAGAGGCAGAA
GAGGCTTGCCACCTCTCCGCAGCAGGGCTTGAAGCAGGAGAGGTCGCCCA
CATCCCGGTGGATGAAGGCGAGGAATGGGTGTACGACGGTGCCTGA
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protein sequence of jgi.p|Nanoce1779_2|647529

>mRNA_4909-protein ID=mRNA_4909-protein|Name=jgi.p|Nanoce1779_2|647529|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MEEEVVPRLECDVDALTVYSRLSQAGLYYASLSSSSLPPFLPSSSSSRQQ
LVERFLMLVRRYREQCLGEGGGQGGMEEGMAMMTTPEAWALMKNMRIGLE
ERGWRCEGEGEGGGEGGRGRVGWLGEPDLVILKPGREGGREGEGEAIAVM
VVSPGQYFQGGVEYDEEEEGEREGEGGKEGGRKSSLMRVFAAGKSRIEEL
REGEAEEACHLSAAGLEAGEVAHIPVDEGEEWVYDGA*
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mRNA from alignment at scaffold_12:655..2481-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4909 ID=mRNA_4909|Name=jgi.p|Nanoce1779_2|647529|organism=Nannochloropsis oceanica|type=mRNA|length=1827bp|location=Sequence derived from alignment at scaffold_12:655..2481- (Nannochloropsis oceanica)
TCATCAACGGTCGGCGCCTTCCATCGCGCGCTCTACCGAGGGCTGATGCG
GAGGGAAGGAGGGAGAGAGGGAGGGGTAGGGGTGGGAGGGAAGGATCTCA
GAAAGATTCAAACCCTGACGTTGAGCCAATTGGCAGCAATTTTGTGGGGA
CTTGCAGCAATGGGGGAGGGAAGGAGGGAAGGAGGGAGGGAGGGAGGGAG
AGATGAGCGGGTCTTTCGACGAGTGCTGTCTGAGGCCTGTCTAAGGTTGC
AGGGACATGGGCCAGGACCTTTCTCGGCACCTGCAGCAGCAGCAGCAGCA
AGGGGGAGTATTGGCGGAAATGAGGAGGAGGGAAGGGGAGGATGCCTAAA
AGTGAAAGGAGACGGAAGTAGATGAAGAGGAGATGGTGGAGGGGGAGGAG
GAGGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAAGTGGTGCCGAGGCTGGAGTGTGACGTGGAT
GCCCTGACGGTCTACTCTCGCTTGAGCCAGGCAGGATTATACTACGCATC
GCTGTCCTCTTCCTCCCTCCCTCCCTTCCTTCCTTCCTCATCCTCCTCGA
GACAGCAGTTGGTCGAGCGGTTCTTAATGCTGGTCCGGAGGTATCGGGAG
CAGTGCTTGGGGGAGGGAGGGGGGCAGGGAGGGATGGAAGAAGGGATGGC
GATGATGACGACGCCTGAGGCATGGGCCTTGATGAAGAACATGAGGATAG
GATTGGAGGAGAGGGGGTGGAGGTGCGAGGGTGAAGGGGAGGGAGGAGGG
GAGGGAGGGAGGGGGAGGGTGGGGTGGCTTGGAGAGCCGGATTTGGTGAT
TTTGAAGCCGGGGAGGGAGGGAGGGAGGGAGGGGGAGGGGGAGGCGATTG
CGGTTATGGTTGTATCGCCTGGGCAGTACTTTCAAGGTGGCGTTGAATAC
GACGAGGAAGAGGAAGGGGAAAGGGAGGGGGAGGGCGGGAAGGAGGGAGG
GCGGAAGTCGTCTTTGATGCGGGTAAGGCCGTTGGGGGCAGCAGCCTTCC
GGTGGAGGGTGCTGAAGAGGGAATGGAGGAGGGGAAAGGTGGTGGTGGTC
ACCCCCGAGTCGTGGGAGGCGTTCGTGGGAAGGGAGGGGGTGAAGGAGCG
GGAGAGAAGGGAGGGTGTAGGTCAGGGGAGGGTGGCGCGAGAGTGTGAGG
GAGGGAGGGGGGGAGGGGGGGAGTTGTAGAAATGAGTGGAAGAGCACAAG
AGGAGAGAGGAAATGAAAAATGAGTGTCGGAAGACTCCAAGAAATGGGAA
GAGAGATAGTGCATGAAGGGTGTAAGGAAAAAGAATAGCCAGCATAGACG
AGAGCGACTCTTGCTGCCCTCGTTCTTCAATCGTCACTACGACCACCCGC
CACTCGATTTTTTTTTTTTCCTTCCTCCTCCTCCTCCTCCTCCCCCTCGA
ATAAGTTTCTCCTCCTGAAGAAAAGCCATAGGGCCGAAATACAATCGTCA
CTCCTCCCCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCTTCCAAGCAC
GGCCGCAACACCCTCGCCAGCACGCCATCCATTATAAAAGCCGTTAGCCC
CCAAACCTTTGCCGGCCCCCGTTAAAAAACGGCATGTCCAATCTTCTGCT
CCTCCCTCCCTCCCTTGTGTCGGGCAGGTCTTCGCGGCCGGCAAGAGTCG
GATCGAGGAGCTGAGGGAGGGAGAGGCAGAAGAGGCTTGCCACCTCTCCG
CAGCAGGGCTTGAAGCAGGAGAGGTCGCCCACATCCCGGTGGATGAAGGC
GAGGAATGGGTGTACGACGGTGCCTGA
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Coding sequence (CDS) from alignment at scaffold_12:655..2481-

>mRNA_4909 ID=mRNA_4909|Name=jgi.p|Nanoce1779_2|647529|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at scaffold_12:655..2481- (Nannochloropsis oceanica)
GTCTTCGCGGCCGGCAAGAGTCGGATCGAGGAGCTGAGGGAGGGAGAGGC
AGAAGAGGCTTGCCACCTCTCCGCAGCAGGGCTTGAAGCAGGAGAGGTCG
CCCACATCCCGGTGGATGAAGGCGAGGAATGGGTGTACGACGGTGCCTGA
GAGGAGGAAGTGGTGCCGAGGCTGGAGTGTGACGTGGATGCCCTGACGGT
CTACTCTCGCTTGAGCCAGGCAGGATTATACTACGCATCGCTGTCCTCTT
CCTCCCTCCCTCCCTTCCTTCCTTCCTCATCCTCCTCGAGACAGCAGTTG
GTCGAGCGGTTCTTAATGCTGGTCCGGAGGTATCGGGAGCAGTGCTTGGG
GGAGGGAGGGGGGCAGGGAGGGATGGAAGAAGGGATGGCGATGATGACGA
CGCCTGAGGCATGGGCCTTGATGAAGAACATGAGGATAGGATTGGAGGAG
AGGGGGTGGAGGTGCGAGGGTGAAGGGGAGGGAGGAGGGGAGGGAGGGAG
GGGGAGGGTGGGGTGGCTTGGAGAGCCGGATTTGGTGATTTTGAAGCCGG
GGAGGGAGGGAGGGAGGGAGGGGGAGGGGGAGGCGATTGCGGTTATGGTT
GTATCGCCTGGGCAGTACTTTCAAGGTGGCGTTGAATACGACGAGGAAGA
GGAAGGGGAAAGGGAGGGGGAGGGCGGGAAGGAGGGAGGGCGGAAGTCGT
CTTTGATGCGGATGGTCTTCGCGGCCGGCAAGAGTCGGATCGAGGAGCTG
AGGGAGGGAGAGGCAGAAGAGGCTTGCCACCTCTCCGCAGCAGGGCTTGA
AGCAGGAGAGGTCGCCCACATCCCGGTGGATGAAGGCGAGGAATGGGTGT
ACGACGGTGCCTGAGAGGAGGAAGTGGTGCCGAGGCTGGAGTGTGACGTG
GATGCCCTGACGGTCTACTCTCGCTTGAGCCAGGCAGGATTATACTACGC
ATCGCTGTCCTCTTCCTCCCTCCCTCCCTTCCTTCCTTCCTCATCCTCCT
CGAGACAGCAGTTGGTCGAGCGGTTCTTAATGCTGGTCCGGAGGTATCGG
GAGCAGTGCTTGGGGGAGGGAGGGGGGCAGGGAGGGATGGAAGAAGGGAT
GGCGATGATGACGACGCCTGAGGCATGGGCCTTGATGAAGAACATGAGGA
TAGGATTGGAGGAGAGGGGGTGGAGGTGCGAGGGTGAAGGGGAGGGAGGA
GGGGAGGGAGGGAGGGGGAGGGTGGGGTGGCTTGGAGAGCCGGATTTGGT
GATTTTGAAGCCGGGGAGGGAGGGAGGGAGGGAGGGGGAGGGGGAGGCGA
TTGCGGTTATGGTTGTATCGCCTGGGCAGTACTTTCAAGGTGGCGTTGAA
TACGACGAGGAAGAGGAAGGGGAAAGGGAGGGGGAGGGCGGGAAGGAGGG
AGGGCGGAAGTCGTCTTTGATGCGGATGGTCTTCGCGGCCGGCAAGAGTC
GGATCGAGGAGCTGAGGGAGGGAGAGGCAGAAGAGGCTTGCCACCTCTCC
GCAGCAGGGCTTGAAGCAGGAGAGGTCGCCCACATCCCGGTGGATGAAGG
CGAGGAATGGGTGTACGACGGTGCCTGAGAGGAGGAAGTGGTGCCGAGGC
TGGAGTGTGACGTGGATGCCCTGACGGTCTACTCTCGCTTGAGCCAGGCA
GGATTATACTACGCATCGCTGTCCTCTTCCTCCCTCCCTCCCTTCCTTCC
TTCCTCATCCTCCTCGAGACAGCAGTTGGTCGAGCGGTTCTTAATGCTGG
TCCGGAGGTATCGGGAGCAGTGCTTGGGGGAGGGAGGGGGGCAGGGAGGG
ATGGAAGAAGGGATGGCGATGATGACGACGCCTGAGGCATGGGCCTTGAT
GAAGAACATGAGGATAGGATTGGAGGAGAGGGGGTGGAGGTGCGAGGGTG
AAGGGGAGGGAGGAGGGGAGGGAGGGAGGGGGAGGGTGGGGTGGCTTGGA
GAGCCGGATTTGGTGATTTTGAAGCCGGGGAGGGAGGGAGGGAGGGAGGG
GGAGGGGGAGGCGATTGCGGTTATGGTTGTATCGCCTGGGCAGTACTTTC
AAGGTGGCGTTGAATACGACGAGGAAGAGGAAGGGGAAAGGGAGGGGGAG
GGCGGGAAGGAGGGAGGGCGGAAGTCGTCTTTGATGCGGATG
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Synonyms
Publications