jgi.p|Nanoce1779_2|446869, mRNA_4906 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|446869
Unique NamemRNA_4906
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1026
Alignment locationscaffold_9:951021..952046 -

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Properties
Property NameValue
TranscriptId446955
TrackFilteredModels2
ProteinId446869
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:951021..952046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|446869gene_4906Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|446869mRNA_4906-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4906CDS_4906Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4906 ID=mRNA_4906|Name=jgi.p|Nanoce1779_2|446869|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
AATACCACTTCCTCCGCCATCTATCCAAAGCCACAGTGGCCCTCATCGTC
CTTCCTCCTCCATTCCGTGGCTTCAGGGAAATTCTGCACGCACGCGATAG
TCTACATATAAGCCTCACACTCTGTGACCGACGAAATTGTCAAACCAAAG
CCGACCTATGACGGCAAGCCCTGACTCTCTCTCCTGTCCTCACTCCACCT
CTTCCTCTTCCGGCCCCTCATCCTCTGCCTTCTCCTCTGCAGCCTCGAAT
GAACCGCAGCACGAGCACCACAAGCTAGACCTCATGTCCCCCATTCAAAA
ACAGCAACATATTTCCCCCCCCTCTTCACCGCCTTCTTCCTTACTCGATG
CCAGCAACAGTGCCGCAGCAAAGAGACAAAACCGCATGCGGGTCACGGTC
CTGGCAATGGTGATCGTGACAGAGCTTATTGTACAAGTTTTGTCTGCCGC
AATGGTACCCTTCTTCCCTGATTTCGCCGAAAAGCACCTTGGAGCTAATT
CGACGATTGTGGGAGTGATCTTCTCGCTGTACCCTTTGTCCTTGTTCTTG
ACGAGCTTGGTGGTGGGTGTGGTGTCGGCGAGGTTCGGAAGGGTCTTTGT
CTTCACGGTGGGCCTGGTGCTGCTGGGGGGGGGTACGGTGGGCTTTGGAT
TCTGTAGGGACCTGACGTCTATTATGCTTGTGAGGGTGGTGCAGGGGGTG
GGGGGGGGATGCATCAACGTGGCGGGCATGGCCTTGTTGCTGCAGGTGTC
GATAAACATCGAGAGGGACGTGGGGTTGGACCAGGCGGCGATTGGGTTGG
GCTACATTGTGAGTGCTTCTTTTTGGGGAGTGGTGCTTGATGGAAGGAAG
ACTGTCATTTGTGTCTTTTGACCCTATTGAGCTGTTTATTTCGTGCCCTA
GTAGGCATACCGACTTCTGTCCCCTTTCCCGCCCGACCAAAACTCACAAC
TTCCACCTACACCTCTCTCTCTACTCATCTTATCACCTACACCTTACTAC
AGATCGGTCCCCCTTTAGGCGCCATT
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protein sequence of jgi.p|Nanoce1779_2|446869

>mRNA_4906-protein ID=mRNA_4906-protein|Name=jgi.p|Nanoce1779_2|446869|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MTASPDSLSCPHSTSSSSGPSSSAFSSAASNEPQHEHHKLDLMSPIQKQQ
HISPPSSPPSSLLDASNSAAAKRQNRMRVTVLAMVIVTELIVQVLSAAMV
PFFPDFAEKHLGANSTIVGVIFSLYPLSLFLTSLVVGVVSARFGRVFVFT
VGLVLLGGGTVGFGFCRDLTSIMLVRVVQGVGGGCINVAGMALLLQVSIN
IERDVGLDQAAIGLGYIVSASFWGVVLDGRKTVICVF*
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mRNA from alignment at scaffold_9:951021..952046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4906 ID=mRNA_4906|Name=jgi.p|Nanoce1779_2|446869|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp|location=Sequence derived from alignment at scaffold_9:951021..952046- (Nannochloropsis oceanica)
AATACCACTTCCTCCGCCATCTATCCAAAGCCACAGTGGCCCTCATCGTC
CTTCCTCCTCCATTCCGTGGCTTCAGGGAAATTCTGCACGCACGCGATAG
TCTACATATAAGCCTCACACTCTGTGACCGACGAAATTGTCAAACCAAAG
CCGACCTATGACGGCAAGCCCTGACTCTCTCTCCTGTCCTCACTCCACCT
CTTCCTCTTCCGGCCCCTCATCCTCTGCCTTCTCCTCTGCAGCCTCGAAT
GAACCGCAGCACGAGCACCACAAGCTAGACCTCATGTCCCCCATTCAAAA
ACAGCAACATATTTCCCCCCCCTCTTCACCGCCTTCTTCCTTACTCGATG
CCAGCAACAGTGCCGCAGCAAAGAGACAAAACCGCATGCGGGTCACGGTC
CTGGCAATGGTGATCGTGACAGAGCTTATTGTACAAGTTTTGTCTGCCGC
AATGGTACCCTTCTTCCCTGATTTCGCCGAAAAGCACCTTGGAGCTAATT
CGACGATTGTGGGAGTGATCTTCTCGCTGTACCCTTTGTCCTTGTTCTTG
ACGAGCTTGGTGGTGGGTGTGGTGTCGGCGAGGTTCGGAAGGGTCTTTGT
CTTCACGGTGGGCCTGGTGCTGCTGGGGGGGGGTACGGTGGGCTTTGGAT
TCTGTAGGGACCTGACGTCTATTATGCTTGTGAGGGTGGTGCAGGGGGTG
GGGGGGGGATGCATCAACGTGGCGGGCATGGCCTTGTTGCTGCAGGTGTC
GATAAACATCGAGAGGGACGTGGGGTTGGACCAGGCGGCGATTGGGTTGG
GCTACATTGTGAGTGCTTCTTTTTGGGGAGTGGTGCTTGATGGAAGGAAG
ACTGTCATTTGTGTCTTTTGACCCTATTGAGCTGTTTATTTCGTGCCCTA
GTAGGCATACCGACTTCTGTCCCCTTTCCCGCCCGACCAAAACTCACAAC
TTCCACCTACACCTCTCTCTCTACTCATCTTATCACCTACACCTTACTAC
AGATCGGTCCCCCTTTAGGCGCCATT
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Coding sequence (CDS) from alignment at scaffold_9:951021..952046-

>mRNA_4906 ID=mRNA_4906|Name=jgi.p|Nanoce1779_2|446869|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_9:951021..952046- (Nannochloropsis oceanica)
ATGACGGCAAGCCCTGACTCTCTCTCCTGTCCTCACTCCACCTCTTCCTC
TTCCGGCCCCTCATCCTCTGCCTTCTCCTCTGCAGCCTCGAATGAACCGC
AGCACGAGCACCACAAGCTAGACCTCATGTCCCCCATTCAAAAACAGCAA
CATATTTCCCCCCCCTCTTCACCGCCTTCTTCCTTACTCGATGCCAGCAA
CAGTGCCGCAGCAAAGAGACAAAACCGCATGCGGGTCACGGTCCTGGCAA
TGGTGATCGTGACAGAGCTTATTGTACAAGTTTTGTCTGCCGCAATGGTA
CCCTTCTTCCCTGATTTCGCCGAAAAGCACCTTGGAGCTAATTCGACGAT
TGTGGGAGTGATCTTCTCGCTGTACCCTTTGTCCTTGTTCTTGACGAGCT
TGGTGGTGGGTGTGGTGTCGGCGAGGTTCGGAAGGGTCTTTGTCTTCACG
GTGGGCCTGGTGCTGCTGGGGGGGGGTACGGTGGGCTTTGGATTCTGTAG
GGACCTGACGTCTATTATGCTTGTGAGGGTGGTGCAGGGGGTGGGGGGGG
GATGCATCAACGTGGCGGGCATGGCCTTGTTGCTGCAGGTGTCGATAAAC
ATCGAGAGGGACGTGGGGTTGGACCAGGCGGCGATTGGGTTGGGCTACAT
TGTGAGTGCTTCTTTTTGGGGAGTGGTGCTTGATGGAAGGAAGACTGTCA
TTTGTGTCTTTTGA
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Synonyms
Publications