jgi.p|Nanoce1779_2|588323, mRNA_4905 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588323
Unique Name	mRNA_4905
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2810
Alignment location	scaffold_9:948360..951349 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588409
Track	FilteredModels2
ProteinId	588323

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:948360..951349 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588323	gene_4905	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588323	mRNA_4905-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4905	CDS_4905	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:948360..951349-
coding sequence from alignment at scaffold_9:948360..951349-

mRNA sequence

>mRNA_4905 ID=mRNA_4905|Name=jgi.p|Nanoce1779_2|588323|organism=Nannochloropsis oceanica|type=mRNA|length=2810bp
GTGGGGGGGGGATGCATCAACGTGGCGGGCATGGCCTTGTTGCTGCAGGT
GTCGATAAACATCGAGAGGGACGTGGGGTTGGACCAGGCGGCGATTGGGT
TGGGCTACATTGTGAGTGCTTCTTTTTGGGGAGTGGTGCTTGATGGAAGG
AAGACTGTCATTTGTGTCTTTTGACCCTATTGAGCTGTTTATTTCGTGCC
CTAGTAGGCATACCGACTTCTGTCCCCTTTCCCGCCCGACCAAAACTCAC
AACTTCCACCTACACCTCTCTCTCTACTCATCTTATCACCTACACCTTAC
TACAGATCGGTCCCCCTTTAGGCGCCATTCTCTACGCTTACTTGGGCTTT
CGCGATCTGAATCTGGTGCTGGGCGCCATCCCTATCGCCGAGCTATTCCT
CTTCCCCTTCGTCGCCCCCCACATCCCATCCCTCACCACCATCGACGCTA
ATAACGATGGGCAACCTTTCACTCCCCCCCTCGCAATGACCGTCGCGTCT
TCATCATCCTCTAACTGTAACGTGATCGAGCAGACCTTTCCTCCCTATCT
GCCCTCGGAGGCCTCTGCCCAGCAGCAACAGCAGCAGCAGCAACAGCAGC
AGCAGCAGTCATTTTATGGGCTAACCACCTTGCCAATCATGGTCGTGGCC
ACAACCAGCGTCTTTGCTTTTACTTCTCTCGGGTTGTTCGACCCCCTTGT
TCTCCCTCACCTGGAGCGATCTTTGGGAGCGAATGTCACAACGGTAGGAG
GAACATTTATGATTCCTTGTGTTGTGTTCACGGCCGTGTCCCTCTTTTCA
GAGGGGTTTATGAAGGGGCTGGGGTACAAGCGTTCGATTGCCTTGGGCTT
ATTGCTGATGATTCTGGGATTTTGGTGCTTGGGTCCGGCGCCATTTTTGC
TGGGATTTGATTGGACGAGGACGGCGGCGTGGGTGGGGCAGGTGATGGGG
TTTGTGTTTTTTGGAGTGGGATTTGCGTTTGTGGTGGTTGCGGTGGTGCC
ATTGATGCATTCATATTTGCACGAGGTGGGAAAGGAGAAGGACGACTACA
TCAGTGCGGTAAATAGCGCGGCAAGTAGCTTGGGTGAGTTCGCGGGGCCA
ATCCTGGGCGGCTTGATGTACGAGAGGCTGCCAGCAAGATGGGAAATCTC
TTGCGTGGAGGGCGGGGAGGTGCTGAATTGTAAGAGCGGGGCGAGCTGGA
CGTGTTTTGTGTTTTCGTGCCTGCTGATGCCGGTGATAGGGCTGTTCTGG
TGGCTGGCCCCGGTAGGGGAGCGGGAGAGGAGGAGGGGAATGATGGAGGC
AGATGAGGTGGTGAGGAGCGGGAAAGAGGAGAAGAAGGTGGCGGGCAACC
CGTCGTCGAACAAAGGGAAGGCGTGCACGGCTGTAGGCCACCACCAACTG
CCTGGAAAGCAGCAGTTGCAGGTGCAGAAGGGTGATATACCCCAGCCCTT
GTCGAGAGACTTGGAGGCTCCTTCGTCTGTGGTGAAGAGCCCGGTGCGTC
CTTCCACGGTGCAAGCACGCTGGACAGGGTGCGGTAGGTCATGATCATTA
GTAACATGATAATGATGGAAGAAGGAATTATTTGACAATGTAAAAAAAGA
ATGGAGGAGAAGGGAGGCGAAAGTTTTTGTTCGAGTTGAAGGGGGGAAGG
AAAAAGGCGAGTAAACACTTGTATTAAAAAGTGAAGAGAGGATAACGAAA
GAAGTGGAAGCTAAAGTGAGGCAGTGAAAGCAAGCAATCGAAAGGATCCC
GAGCCTGTGGGGCTCGTTAACACCCTAACTCAGCCACTAGCCTTAGGGTT
GCTTACTTCACTGCCTTTCTCACCTTGGCCTCGGTCACCACAACGACCGT
ACGTACGTGGAGTGAAAGTCCGTGGTAGTACTCGTCGTTCCCCTTATTGT
TTCTGTTGTTTTCCTCTATTCCTTTTATTATACTGTTGTTTTCCTTCATT
CCTTTTATTATACATAAACGCAGCGACTTCTCAGACAGACACCAACGCTT
TATCATAACTCTTTTACAGGCGATAGTACTTTATTTCTTTCCCTCATTTA
CAGTCCCAATGCAAGCCACACAGCAGGAATCACGCCAATGACACACCAGC
CCACGGCAAAGTAATTCAAGTACTTAACCAACAGTTCCGCACTGGTAAAG
GCCCGCAGCCCACGCTCTCCTGTCCAATCATCATCCTTTTTAATTGTCAT
AGGGTGCCGTGCTTTTGAGGAACACGTACGTATCGCGCCTTCCACCATGG
TGGTGGCGAGGGGCTTGGCCAGCGACTTCACCGCGCCCAAGAAAAACAAC
CCGACCACTGCACGGAGGCAGACGCGCCAGCCCATTGGAGGGGGCTCGAG
GAGGGTTTGAAGGACGGACGACGCTTGTGGTTTCATGAGCAGACAGCGGG
AGGCCAGAAGAACGCCGCCGCCCGCACCCATGACAGAGATGGTGTAGCTG
AGGGTGGGCGTGGGCTTGTCCGGCACCGGATACAGGCGTACCATGGCCGC
TGAGACAAGCACAACCACCACCCCTCCCAGCGGATGAAACACTGCAAAAC
GTTCCGCCTCATCCCCCCAAGCAAGGCCCAACACAAGGAGAATTGTGCCG
AGGATCCAGCCTCCTACGAGATCTGGCATGGAGTGCACGCCGAGGTAAAG
ACGGGATGTGCAGACTGAGGCAGCGAAAAAGAGCCAAAGGAGGAGATGGT
GGGTGAAAGAGGGAGATAAGGACAAGGACGACGCATTGGAAAAAGATAGA
GAGTGGTGCTTGAGGAGGCAGAAGAGGGGGACAAAAGTGCCAAGGGCATG
TACGCTCGGG

protein sequence of jgi.p|Nanoce1779_2|588323

>mRNA_4905-protein ID=mRNA_4905-protein|Name=jgi.p|Nanoce1779_2|588323|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MTVASSSSSNCNVIEQTFPPYLPSEASAQQQQQQQQQQQQQSFYGLTTLP
IMVVATTSVFAFTSLGLFDPLVLPHLERSLGANVTTVGGTFMIPCVVFTA
VSLFSEGFMKGLGYKRSIALGLLLMILGFWCLGPAPFLLGFDWTRTAAWV
GQVMGFVFFGVGFAFVVVAVVPLMHSYLHEVGKEKDDYISAVNSAASSLG
EFAGPILGGLMYERLPARWEISCVEGGEVLNCKSGASWTCFVFSCLLMPV
IGLFWWLAPVGERERRRGMMEADEVVRSGKEEKKVAGNPSSNKGKACTAV
GHHQLPGKQQLQVQKGDIPQPLSRDLEAPSSVVKSPVRPSTVQARWTGCG
RS*

mRNA from alignment at scaffold_9:948360..951349-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4905 ID=mRNA_4905|Name=jgi.p|Nanoce1779_2|588323|organism=Nannochloropsis oceanica|type=mRNA|length=2990bp|location=Sequence derived from alignment at scaffold_9:948360..951349- (Nannochloropsis oceanica)
GTGGGGGGGGGATGCATCAACGTGGCGGGCATGGCCTTGTTGCTGCAGGT
GTCGATAAACATCGAGAGGGACGTGGGGTTGGACCAGGCGGCGATTGGGT
TGGGCTACATTGTGAGTGCTTCTTTTTGGGGAGTGGTGCTTGATGGAAGG
AAGACTGTCATTTGTGTCTTTTGACCCTATTGAGCTGTTTATTTCGTGCC
CTAGTAGGCATACCGACTTCTGTCCCCTTTCCCGCCCGACCAAAACTCAC
AACTTCCACCTACACCTCTCTCTCTACTCATCTTATCACCTACACCTTAC
TACAGATCGGTCCCCCTTTAGGCGCCATTCTCTACGCTTACTTGGGCTTT
CGCGATCTGAATCTGGTGCTGGGCGCCATCCCTATCGCCGAGCTATTCCT
CTTCCCCTTCGTCGCCCCCCACATCCCATCCCTCACCACCATCGACGCTA
ATAACGATGGGCAACCTTTCACTCCCCCCCTCGCAATGACCGTCGCGTCT
TCATCATCCTCTAACTGTAACGTGATCGAGCAGACCTTTCCTCCCTATCT
GCCCTCGGAGGCCTCTGCCCAGCAGCAACAGCAGCAGCAGCAACAGCAGC
AGCAGCAGTCATTTTATGGGCTAACCACCTTGCCAATCATGGTCGTGGCC
ACAACCAGCGTCTTTGCTTTTACTTCTCTCGGGTTGTTCGACCCCCTTGT
TCTCCCTCACCTGGAGCGATCTTTGGGAGCGAATGTCACAACGGTAGGAG
GAACATTTATGATTCCTTGTGTTGTGTTCACGGCCGTGTCCCTCTTTTCA
GAGGGGTTTATGAAGGGGCTGGGGTACAAGCGTTCGATTGCCTTGGGCTT
ATTGCTGATGATTCTGGGATTTTGGTGCTTGGGTCCGGCGCCATTTTTGC
TGGGATTTGATTGGACGAGGACGGCGGCGTGGGTGGGGCAGGTGATGGGG
TTTGTGTTTTTTGGAGTGGGATTTGCGTTTGTGGTGGTTGCGGTGGTGCC
ATTGATGCATTCATATTTGCACGAGGTGGGAAAGGAGAAGGACGACTACA
TCAGTGCGGTAAATAGCGCGGCAAGTAGCTTGGGTGAGTTCGCGGGGCCA
ATCCTGGGCGGCTTGATGTACGAGAGGCTGCCAGCAAGATGGGAAATCTC
TTGCGTGGAGGGCGGGGAGGTGCTGAATTGTAAGAGCGGGGCGAGCTGGA
CGTGTTTTGTGTTTTCGTGCCTGCTGATGCCGGTGATAGGGCTGTTCTGG
TGGCTGGCCCCGGTAGGGGAGCGGGAGAGGAGGAGGGGAATGATGGAGGC
AGATGAGGTGGTGAGGAGCGGGAAAGAGGAGAAGAAGGTGGCGGGCAACC
CGTCGTCGAACAAAGGGAAGGCGTGCACGGCTGTAGGCCACCACCAACTG
CCTGGAAAGCAGCAGTTGCAGGTGCAGAAGGGTGATATACCCCAGCCCTT
GTCGAGAGACTTGGAGGCTCCTTCGTCTGTGGTGAAGAGCCCGGTGCGTC
CTTCCACGGTGCAAGCACGCTGGACAGGGTGCGGTAGGTCATGATCATTA
GTAACATGATAATGATGGAAGAAGGAATTATTTGACAATGTAAAAAAAGA
ATGGAGGAGAAGGGAGGCGAAAGTTTTTGTTCGAGTTGAAGGGGGGAAGG
AAAAAGGCGAGTAAACACTTGTATTAAAAAGTGAAGAGAGGATAACGAAA
GAAGTGGAAGCTAAAGTGAGGCAGTGAAAGCAAGCAATCGAAAGGATCCC
GAGCCTGTGGGGCTCGTTAACACCCTAACTCAGCCACTAGCCTTAGGGTT
GCTTACTTCACTGCCTTTCTCACCTTGGCCTCGGTCACCACAACGACCGT
ACGTACGTGGAGTGAAAGTCCGTGGTAGTACTCGTCGTTCCCCTTATTGT
TTCTGTTGTTTTCCTCTATTCCTTTTATTATACTGTTGTTTTCCTTCATT
CCTTTTATTATACATAAACGCAGCGACTTCTCAGACAGACACCAACGCTT
TATCATAACTCTTTTACAGGCGATAGTACTTTATTTCTTTCCCTCATTTA
CAGTCCCAATGCAAGCCACACAGCAGGAATCACGCCAATGACACACCAGC
CCACGGCAAAGTAATTCAAGTACTTAACCAACAGTTCCGCACTGGTAAAG
GCCCGCAGCCCACGCTCTCCTGTCCAATCATCATCCTTTTTAATTGTCAT
AGGGTGCCGTGCTTTTGAGGAACACGTACGTATCGCGCCTTCCACCATGG
TGGTGGCGAGGGGCTTGGCCAGCGACTTCACCGCGCCCAAGAAAAACAAC
CCGACCACTGCACGGAGGCAGACGCGCCAGCCCATTGGAGGGGGCTCGAG
GAGGGTTTGAAGGACGGACGACGCTTGTGGTTTCATGAGCAGACAGCGGG
AGGCCAGAAGAACGCCGCCGCCCGCACCCATGACAGAGATGGTGTAGCTG
AGGGTGGGCGTGGGCTAATTCGTTTGGAAGGGAAGGGTGGATGTACGGGT
GTGGAGGTTAAGAAAGGAAGGTGAGTCGGTGAAGAAGTGCATTTTGGGGG
TAATTTGATTCCATGAGGAAATAAGAGAATGATCTAACAAATGGCTCAAC
ACTGTTGTCTCAGCTCACTTTCCTCTTGTTCTCTCAACTCCTACCTTGTC
CGGCACCGGATACAGGCGTACCATGGCCGCTGAGACAAGCACAACCACCA
CCCCTCCCAGCGGATGAAACACTGCAAAACGTTCCGCCTCATCCCCCCAA
GCAAGGCCCAACACAAGGAGAATTGTGCCGAGGATCCAGCCTCCTACGAG
ATCTGGCATGGAGTGCACGCCGAGGTAAAGACGGGATGTGCAGACTGAGG
CAGCGAAAAAGAGCCAAAGGAGGAGATGGTGGGTGAAAGAGGGAGATAAG
GACAAGGACGACGCATTGGAAAAAGATAGAGAGTGGTGCTTGAGGAGGCA
GAAGAGGGGGACAAAAGTGCCAAGGGCATGTACGCTCGGG

Coding sequence (CDS) from alignment at scaffold_9:948360..951349-

>mRNA_4905 ID=mRNA_4905|Name=jgi.p|Nanoce1779_2|588323|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at scaffold_9:948360..951349- (Nannochloropsis oceanica)
ATGACCGTCGCGTCTTCATCATCCTCTAACTGTAACGTGATCGAGCAGAC
CTTTCCTCCCTATCTGCCCTCGGAGGCCTCTGCCCAGCAGCAACAGCAGC
AGCAGCAACAGCAGCAGCAGCAGTCATTTTATGGGCTAACCACCTTGCCA
ATCATGGTCGTGGCCACAACCAGCGTCTTTGCTTTTACTTCTCTCGGGTT
GTTCGACCCCCTTGTTCTCCCTCACCTGGAGCGATCTTTGGGAGCGAATG
TCACAACGGTAGGAGGAACATTTATGATTCCTTGTGTTGTGTTCACGGCC
GTGTCCCTCTTTTCAGAGGGGTTTATGAAGGGGCTGGGGTACAAGCGTTC
GATTGCCTTGGGCTTATTGCTGATGATTCTGGGATTTTGGTGCTTGGGTC
CGGCGCCATTTTTGCTGGGATTTGATTGGACGAGGACGGCGGCGTGGGTG
GGGCAGGTGATGGGGTTTGTGTTTTTTGGAGTGGGATTTGCGTTTGTGGT
GGTTGCGGTGGTGCCATTGATGCATTCATATTTGCACGAGGTGGGAAAGG
AGAAGGACGACTACATCAGTGCGGTAAATAGCGCGGCAAGTAGCTTGGGT
GAGTTCGCGGGGCCAATCCTGGGCGGCTTGATGTACGAGAGGCTGCCAGC
AAGATGGGAAATCTCTTGCGTGGAGGGCGGGGAGGTGCTGAATTGTAAGA
GCGGGGCGAGCTGGACGTGTTTTGTGTTTTCGTGCCTGCTGATGCCGGTG
ATAGGGCTGTTCTGGTGGCTGGCCCCGGTAGGGGAGCGGGAGAGGAGGAG
GGGAATGATGGAGGCAGATGAGGTGGTGAGGAGCGGGAAAGAGGAGAAGA
AGGTGGCGGGCAACCCGTCGTCGAACAAAGGGAAGGCGTGCACGGCTGTA
GGCCACCACCAACTGCCTGGAAAGCAGCAGTTGCAGGTGCAGAAGGGTGA
TATACCCCAGCCCTTGTCGAGAGACTTGGAGGCTCCTTCGTCTGTGGTGA
AGAGCCCGGTGCGTCCTTCCACGGTGCAAGCACGCTGGACAGGGTGCGGT
AGGTCATGA

Synonyms

Publications