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Properties
| Property Name | Value |
|---|
| TranscriptId | 554954 |
| Track | FilteredModels2 |
| ProteinId | 554868 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:944698..947178 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4903 ID=mRNA_4903|Name=jgi.p|Nanoce1779_2|554868|organism=Nannochloropsis oceanica|type=mRNA|length=2373bp
GTATAGTCTTGAGAGACCTAATCGCGATGCTTCAGGCTACAAAGCAGCGA
AGCCAAAATGAGAGTGCGGTTTGAGATGATTTTCCTTCTTGTGGCTCCAC
GGTCTTAGCGTCTACATGCATTTGCTTTGGTGCCTTACAGCTTTATGTCC
TGCCTTTCGGGTGGTTTTGGTTGAATTCGTCTGATTGTTCCATGTCTTTG
GCGGGGGAACGTGTGGAGTGGTGGGGAGGTCGTCGTCGCCACGCAAAGGA
AATTGATCGAGGAAAAATGATGGAAAGCTGTCGCTGCTGAGCAGGAATAA
ATTGCAAAAAAACTACCTCCAAAATTTGTGAAACTATTAGCGTGTGTGGC
CACGACTTTTAAATTTTACTGGGTAGAGGAGGGTTGCCATACGACAAGCA
TATGACACACAGGATATTTTTTTCATGTCCGCAAGGCACTACCCCACAGT
TCTATGCGGAAGAAAACTATTCTCCAAACTCCATCTGTCTCTCTCCATAC
TCCCTATACACACCATACCACTCATAGATGATGAAGAAAAAGCGGCGTTT
TAGTGATGGCAGCAGTGGCAGCAGCAGCATTAGCCCCACAAGGAACAAAC
GAGGGCGTCTCCTTCCACTCGGTAGCCCCAGCCTCCCCTCCCTACCCATC
CTCGTCGTCCTCTTCCTTACCCTCCTCCTCCTTTTGCCATGCACCATAGC
GTTCAAAGGCCCTCCACTTGGCTCCCAACGCGAACGTCCCTCCACTCCCC
CTTCCCCTCCCTCGGCGCCACCGAAAGTGCTGGTAGTGGGGGCAACGGGG
AGGGTGGGTGGGCTAGTCGTCGAAGGGCTTTTGGCACGAGGCTACAACGT
GGTTGCCCTCGCCCGTGACCCTACCAGCATAGCTGCCACCGCCTTATCTC
AGCTCTCTATCGCTGCAACCAAAAAAGAGAAAGTGGAAGTAGGGACAGGG
GGAACGATGACGGTCGTGAGGGGAGACGTGACAGAGCTCGCCTCTTTGAT
GGCACCGATGCGCGGCTGCGTCGCCTGTATCTCCGTATGCGGAGCCAATC
GAATCACCCATCCTCTTTCTGATATTGCGGGCTTCTTTCTACACCTTACC
CACCCTTACAACGTCAACTACCTCGGTACATTGCACCTCCTCCACGCCGC
TCGCCTAGCAGGCGTCCCTAAGTTTATCCGCGTCACAGGCTTGAGCGTGG
GCTACTCTGCGTTCAACCCCGTCACTTGCCTCTTAAACCTTGTCATCTCC
TTCACAGTCCGGTGGCAGCTGGCAGGCGAACGTGCGATAAGGGCCTCCGG
CATCGATTACACCATCATCCGACCTGGGGCGTTGACAAACGAGGAAGCAG
CACCGGAGGATTTGGTGGTGGGGGGGGATGGGGAGGGAGTCCCTGTGGGG
AGGGTGAGCAGACGCGATGTGGCATGCTTGTGTGTGGCTGCCCTGGAGTC
AAGCAAGGCGAGCAATATGACTCTGTCAGTTGCGGGGGTGGGGACGAAGG
AGGAAAAGAGGCGGAGGAAGAAAGATGAGAGGGTAATGATGAAGAGCATT
GACGGCCCGGCGACCATGGGTATCGAAACCCGGCGTAGCAGCACCCTCGA
CAAGAACGGCAAACCCTCCGCCTCCTCATTTTCCTCCTCCTCCTCGTCCT
CCTCCGTCTCTCCACCTTCACGTGCCGTCCAGAGCATGAACGACGACGCC
CTGTGGCCTTATAAGATCCTCTTCCGCCGTGAAGGGCGACCGGACCTCGT
CCCCCTTGAACCCAAGCTCCATCGTCTGGCCGCAATAGTCTTCGTGGCGG
TCGCGTCCCTCTTGGGGGTGGGTCTAGGGGCAGGCCTGTGGAAGATGGGA
GAGGAGGCAGCGCGATGGATGAGAGCAGGGAAGACACCACCAAGAGGGTT
GGTTTCGGCGATGGAGAAGGGTAGCCCTTGGAGAGATGGGATAGGAAGAG
GGGGTGGAGAAGGAGGAAGAGGGGTGGAAGGGTGGAAAAATATGTAACCA
AGGGTATCGGAATTCGAGTGGTGCTTTCGTGCTTAAGGTGTTCATAGATA
GAAGTGACTGCTGTGACAGCGGCATGCATGAATTCTTAGTTAATTTTACT
GATAACACAACGGTCGCATGTACATACACACATAGACGGCCAAGACTAGG
ATAGGTGTTTTAATGGTGAGGGAGAAAGGTCATAGGAAAAAGCATACAAT
CAGTGTCGACGTAGTATACAAAATAAACAACGGAACACCGATTCGTACTT
TACCATGCCGCAGAGTATCGGAAAAAGTGCTGGGGAGGTTGGAGGTGAAG
TGATCCTCAAACCCACACTTAATCCCCTGATGCCCGCCAAATTGATCATG
ATAATCAAAAATCTTTGGCCTGC back to topprotein sequence of jgi.p|Nanoce1779_2|554868 >mRNA_4903-protein ID=mRNA_4903-protein|Name=jgi.p|Nanoce1779_2|554868|organism=Nannochloropsis oceanica|type=polypeptide|length=490bp
MMKKKRRFSDGSSGSSSISPTRNKRGRLLPLGSPSLPSLPILVVLFLTLL
LLLPCTIAFKGPPLGSQRERPSTPPSPPSAPPKVLVVGATGRVGGLVVEG
LLARGYNVVALARDPTSIAATALSQLSIAATKKEKVEVGTGGTMTVVRGD
VTELASLMAPMRGCVACISVCGANRITHPLSDIAGFFLHLTHPYNVNYLG
TLHLLHAARLAGVPKFIRVTGLSVGYSAFNPVTCLLNLVISFTVRWQLAG
ERAIRASGIDYTIIRPGALTNEEAAPEDLVVGGDGEGVPVGRVSRRDVAC
LCVAALESSKASNMTLSVAGVGTKEEKRRRKKDERVMMKSIDGPATMGIE
TRRSSTLDKNGKPSASSFSSSSSSSSVSPPSRAVQSMNDDALWPYKILFR
REGRPDLVPLEPKLHRLAAIVFVAVASLLGVGLGAGLWKMGEEAARWMRA
GKTPPRGLVSAMEKGSPWRDGIGRGGGEGGRGVEGWKNM* back to topmRNA from alignment at scaffold_9:944698..947178+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4903 ID=mRNA_4903|Name=jgi.p|Nanoce1779_2|554868|organism=Nannochloropsis oceanica|type=mRNA|length=2481bp|location=Sequence derived from alignment at scaffold_9:944698..947178+ (Nannochloropsis oceanica)
GTATAGTCTTGAGAGACCTAATCGCGATGCTTCAGGCTACAAAGCAGCGA
AGCCAAAATGAGAGTGCGGTTTGAGATGATTTTCCTTCTTGTGGCTCCAC
GGTCTTAGCGTCTACATGCATTTGCTTTGGTGCCTTACAGCTTTATGTCC
TGCCTTTCGGGTGGTTTTGGTTGAATTCGTCTGATTGTTCCATGTCTTTG
GCGGGGGAACGTGTGGAGTGGTGGGGAGGTCGTCGTCGCCACGCAAAGGA
AATTGATCGAGGAAAAATGATGGAAAGCTGTCGCTGCTGAGCAGGAATAA
ATTGCAAAAAAACTACCTCCAAAATTTGTGAAACTATTAGCGTGTGTGGC
CACGACTTTTAAATTTTACTGGGTAGAGGAGGGTTGCCATACGACAAGCA
TATGACACACAGGATATTTTTTTCATGTCCGCAAGGCACTACCCCACAGT
TCTATGCGGAAGAAAACTATTCTCCAAACTCCATCTGTCTCTCTCCATAC
TCCCTATACACACCATACCACTCATAGATGATGAAGAAAAAGCGGCGTTT
TAGTGATGGCAGCAGTGGCAGCAGCAGCATTAGCCCCACAAGGAACAAAC
GAGGGCGTCTCCTTCCACTCGGTAGCCCCAGCCTCCCCTCCCTACCCATC
CTCGTCGTCCTCTTCCTTACCCTCCTCCTCCTTTTGCCATGCACCATAGC
GTTCAAAGGCCCTCCACTTGGCTCCCAACGCGAACGTCCCTCCACTCCCC
CTTCCCCTCCCTCGGCGCCACCGAAAGTGCTGGTAGTGGGGGCAACGGGG
AGGGTGGGTGGGCTAGTCGTCGAAGGGCTTTTGGCACGAGGCTACAACGT
GGTTGCCCTCGCCCGTGACCCTACCAGCATAGCTGCCACCGCCTTATCTC
AGCTCTCTATCGCTGCAACCAAAAAAGAGAAAGTGGAAGTAGGGACAGGG
GGAACGATGACGGTCGTGAGGGGAGACGTGACAGAGCTCGCCTCTTTGAT
GGCACCGATGCGCGGCTGCGTCGCCTGTATCTCCGTATGCGGAGCCAATC
GAATCACCCATCCTCTTTCTGATATTGCGGGCTTCTTTCTACACCTTGTC
CTGCGTTTCTCCTCCACTCTAAACCAGAAAAAGACACCTTCCTCATCCTC
TGGCTTCTCCCCCTCCTTCTCCTCCGCCTCCTCCCTCTCCGCCGCCTACC
CCAAGACCCACCCTTACAACGTCAACTACCTCGGTACATTGCACCTCCTC
CACGCCGCTCGCCTAGCAGGCGTCCCTAAGTTTATCCGCGTCACAGGCTT
GAGCGTGGGCTACTCTGCGTTCAACCCCGTCACTTGCCTCTTAAACCTTG
TCATCTCCTTCACAGTCCGGTGGCAGCTGGCAGGCGAACGTGCGATAAGG
GCCTCCGGCATCGATTACACCATCATCCGACCTGGGGCGTTGACAAACGA
GGAAGCAGCACCGGAGGATTTGGTGGTGGGGGGGGATGGGGAGGGAGTCC
CTGTGGGGAGGGTGAGCAGACGCGATGTGGCATGCTTGTGTGTGGCTGCC
CTGGAGTCAAGCAAGGCGAGCAATATGACTCTGTCAGTTGCGGGGGTGGG
GACGAAGGAGGAAAAGAGGCGGAGGAAGAAAGATGAGAGGGTAATGATGA
AGAGCATTGACGGCCCGGCGACCATGGGTATCGAAACCCGGCGTAGCAGC
ACCCTCGACAAGAACGGCAAACCCTCCGCCTCCTCATTTTCCTCCTCCTC
CTCGTCCTCCTCCGTCTCTCCACCTTCACGTGCCGTCCAGAGCATGAACG
ACGACGCCCTGTGGCCTTATAAGATCCTCTTCCGCCGTGAAGGGCGACCG
GACCTCGTCCCCCTTGAACCCAAGCTCCATCGTCTGGCCGCAATAGTCTT
CGTGGCGGTCGCGTCCCTCTTGGGGGTGGGTCTAGGGGCAGGCCTGTGGA
AGATGGGAGAGGAGGCAGCGCGATGGATGAGAGCAGGGAAGACACCACCA
AGAGGGTTGGTTTCGGCGATGGAGAAGGGTAGCCCTTGGAGAGATGGGAT
AGGAAGAGGGGGTGGAGAAGGAGGAAGAGGGGTGGAAGGGTGGAAAAATA
TGTAACCAAGGGTATCGGAATTCGAGTGGTGCTTTCGTGCTTAAGGTGTT
CATAGATAGAAGTGACTGCTGTGACAGCGGCATGCATGAATTCTTAGTTA
ATTTTACTGATAACACAACGGTCGCATGTACATACACACATAGACGGCCA
AGACTAGGATAGGTGTTTTAATGGTGAGGGAGAAAGGTCATAGGAAAAAG
CATACAATCAGTGTCGACGTAGTATACAAAATAAACAACGGAACACCGAT
TCGTACTTTACCATGCCGCAGAGTATCGGAAAAAGTGCTGGGGAGGTTGG
AGGTGAAGTGATCCTCAAACCCACACTTAATCCCCTGATGCCCGCCAAAT
TGATCATGATAATCAAAAATCTTTGGCCTGC back to topCoding sequence (CDS) from alignment at scaffold_9:944698..947178+ >mRNA_4903 ID=mRNA_4903|Name=jgi.p|Nanoce1779_2|554868|organism=Nannochloropsis oceanica|type=CDS|length=2940bp|location=Sequence derived from alignment at scaffold_9:944698..947178+ (Nannochloropsis oceanica)
ATGATGAAGAAAAAGCGGCGTTTTAGTGATGGCAGCAGTGGCAGCAGCAG
CATTAGCCCCACAAGGAACAAACGAGGGCGTCTCCTTCCACTCGGTAGCC
CCAGCCTCCCCTCCCTACCCATCCTCGTCGTCCTCTTCCTTACCCTCCTC
CTCCTTTTGCCATGCACCATAGCGTTCAAAGGCCCTCCACTTGGCTCCCA
ACGCGAACGTCCCTCCACTCCCCCTTCCCCTCCCTCGGCGCCACCGAAAG
TGCTGGTAGTGGGGGCAACGGGGAGGGTGGGTGGGCTAGTCGTCGAAGGG
CTTTTGGCACGAGGCTACAACGTGGTTGCCCTCGCCCGTGACCCTACCAG
CATAGCTGCCACCGCCTTATCTCAGCTCTCTATCGCTGCAACCAAAAAAG
AGAAAGTGGAAGTAGGGACAGGGGGAACGATGACGGTCGTGAGGGGAGAC
GTGACAGAGCTCGCCTCTTTGATGGCACCGATGCGCGGCTGCGTCGCCTG
TATCTCCGTATGCGGAGCCAATCGAATCACCCATCCTCTTTCTGATATTG
CGGGCTTCTTTCTACACCTTACCCACCCTTACAACGTCAACTACCTCGGT
ACATTGCACCTCCTCCACGCCGCTCGCCTAGCAGGCGTCCCTAAGTTTAT
CCGCGTCACAGGCTTGAGCGTGGGCTACTCTGCGTTCAACCCCGTCACTT
GCCTCTTAAACCTTGTCATCTCCTTCACAGTCCGGTGGCAGCTGGCAGGC
GAACGTGCGATAAGGGCCTCCGGCATCGATTACACCATCATCCGACCTGG
GGCGTTGACAAACGAGGAAGCAGCACCGGAGGATTTGGTGGTGGGGGGGG
ATGGGGAGGGAGTCCCTGTGGGGAGGGTGAGCAGACGCGATGTGGCATGC
TTGTGTGTGGCTGCCCTGGAGTCAAGCAAGGCGAGCAATATGACTCTGTC
AGTTGCGGGGGTGGGGACGAAGGAGGAAAAGAGGCGGAGGAAGAAAGATG
AGAGGGTAATGATGAAGAGCATTGACGGCCCGGCGACCATGGGTATCGAA
ACCCGGCGTAGCAGCACCCTCGACAAGAACGGCAAACCCTCCGCCTCCTC
ATTTTCCTCCTCCTCCTCGTCCTCCTCCGTCTCTCCACCTTCACGTGCCG
TCCAGAGCATGAACGACGACGCCCTGTGGCCTTATAAGATCCTCTTCCGC
CGTGAAGGGCGACCGGACCTCGTCCCCCTTGAACCCAAGCTCCATCGTCT
GGCCGCAATAGTCTTCGTGGCGGTCGCGTCCCTCTTGGGGGTGGGTCTAG
GGGCAGGCCTGTGGAAGATGGGAGAGGAGGCAGCGCGATGGATGAGAGCA
GGGAAGACACCACCAAGAGGGTTGGTTTCGGCGATGGAGAAGGGTAGCCC
TTGGAGAGATGGGATAGGAAGAGGGGGTGGAGAAGGAGGAAGAGGGGTGG
AAGGGTGGAAAAATATGTAAATGATGAAGAAAAAGCGGCGTTTTAGTGAT
GGCAGCAGTGGCAGCAGCAGCATTAGCCCCACAAGGAACAAACGAGGGCG
TCTCCTTCCACTCGGTAGCCCCAGCCTCCCCTCCCTACCCATCCTCGTCG
TCCTCTTCCTTACCCTCCTCCTCCTTTTGCCATGCACCATAGCGTTCAAA
GGCCCTCCACTTGGCTCCCAACGCGAACGTCCCTCCACTCCCCCTTCCCC
TCCCTCGGCGCCACCGAAAGTGCTGGTAGTGGGGGCAACGGGGAGGGTGG
GTGGGCTAGTCGTCGAAGGGCTTTTGGCACGAGGCTACAACGTGGTTGCC
CTCGCCCGTGACCCTACCAGCATAGCTGCCACCGCCTTATCTCAGCTCTC
TATCGCTGCAACCAAAAAAGAGAAAGTGGAAGTAGGGACAGGGGGAACGA
TGACGGTCGTGAGGGGAGACGTGACAGAGCTCGCCTCTTTGATGGCACCG
ATGCGCGGCTGCGTCGCCTGTATCTCCGTATGCGGAGCCAATCGAATCAC
CCATCCTCTTTCTGATATTGCGGGCTTCTTTCTACACCTTACCCACCCTT
ACAACGTCAACTACCTCGGTACATTGCACCTCCTCCACGCCGCTCGCCTA
GCAGGCGTCCCTAAGTTTATCCGCGTCACAGGCTTGAGCGTGGGCTACTC
TGCGTTCAACCCCGTCACTTGCCTCTTAAACCTTGTCATCTCCTTCACAG
TCCGGTGGCAGCTGGCAGGCGAACGTGCGATAAGGGCCTCCGGCATCGAT
TACACCATCATCCGACCTGGGGCGTTGACAAACGAGGAAGCAGCACCGGA
GGATTTGGTGGTGGGGGGGGATGGGGAGGGAGTCCCTGTGGGGAGGGTGA
GCAGACGCGATGTGGCATGCTTGTGTGTGGCTGCCCTGGAGTCAAGCAAG
GCGAGCAATATGACTCTGTCAGTTGCGGGGGTGGGGACGAAGGAGGAAAA
GAGGCGGAGGAAGAAAGATGAGAGGGTAATGATGAAGAGCATTGACGGCC
CGGCGACCATGGGTATCGAAACCCGGCGTAGCAGCACCCTCGACAAGAAC
GGCAAACCCTCCGCCTCCTCATTTTCCTCCTCCTCCTCGTCCTCCTCCGT
CTCTCCACCTTCACGTGCCGTCCAGAGCATGAACGACGACGCCCTGTGGC
CTTATAAGATCCTCTTCCGCCGTGAAGGGCGACCGGACCTCGTCCCCCTT
GAACCCAAGCTCCATCGTCTGGCCGCAATAGTCTTCGTGGCGGTCGCGTC
CCTCTTGGGGGTGGGTCTAGGGGCAGGCCTGTGGAAGATGGGAGAGGAGG
CAGCGCGATGGATGAGAGCAGGGAAGACACCACCAAGAGGGTTGGTTTCG
GCGATGGAGAAGGGTAGCCCTTGGAGAGATGGGATAGGAAGAGGGGGTGG
AGAAGGAGGAAGAGGGGTGGAAGGGTGGAAAAATATGTAA back to top
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