jgi.p|Nanoce1779_2|588300, mRNA_4900 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588300
Unique NamemRNA_4900
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1846
Alignment locationscaffold_9:939117..941332 -

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Properties
Property NameValue
TranscriptId588386
TrackFilteredModels2
ProteinId588300
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:939117..941332 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588300gene_4900Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588300mRNA_4900-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4900CDS_4900Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4900 ID=mRNA_4900|Name=jgi.p|Nanoce1779_2|588300|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp
AGGTCCTGTCACTTCTTTCCCGCCCACGCGGCGAGCTTGTTATCTTCCGC
GAGGAGACACTGGTGGAGGAGGCGCTAGAGGGAAAGATGGCCTCGGCGGG
GTCCACAGCGTTCTTGCGACAGCCGCACCTGCAAGCCATCACCTCTCGCC
TGCGTCGCGCGTACCCTCGACTAGCGCAGGCCATGGACCGGTGGCTGCTG
GTGGAGCTGGAGGACGAGTACTCCCCCCGGGCCTTGTCGCTCAAGGGTAG
AGAGGGAGGGAGGGAGGGAGGGAATGTCACAGGGGTGTATGTCCTCTGGG
ACTTTGACTGACTACCAACAACCGATCCCCTTACATTCCCTCCCTCCTCC
TCTCCCTCCATCCCTCCTTCCTTCCCTCCTCCCCTCCATCCTTCCCTCCT
TCCAGACCTGCTCGCCATCCTCTCTTCCTGGCAGTGGGAAGTGCTCATTT
CGGACCGCGAACCGCTTCGACGCCAGCTGGAGGAAAGCTTAAGGAGGGCT
TTGCATGCTCCACAGGGCCAAGGACCGAAAGGCGACCTGGTAGAGTCCCT
CCTCCTCATCGACAGCCACACCGACGCTCGCTCCCTCTCCCTCCTCAAAA
CTCGCCTACCACGGGCCTTCGCCGCCTACCAACGCGGAGAAGAGCGATTG
GCCCATGCCCTGAGCATCTGGGAGGGTGGCTCCCTCTCCTCCTTCCTCGA
GACCTACCCGTCCTCCCTTCTCCTCCGACGCATTAAAGGCCCTCTTTCTT
TCTCCCTCTCCCGCTCCTCCTCTGCTACCCCCCTCCTCCTCTTCCTTCTC
CTCGCCCTCCCCCCCTTCCTCGCCCTTCGTTATTCCTATGCGTCGTCTCT
GGCAGCAAGAGCTGAAGGCCGCCCTAACTCACATGCACACTAGCCACAAG
CACAAAAGCAGAGGACGGCGAGGTGTAGGAGCAGGAGGAGGAGGGGAGGG
TGGAGGTGTCAGCAAGTGCAGCAGCGGTGGTGGCAGCAGTAATAGCAACA
GCAACGGCCGTGGCAGCAGCAACAGCAGCAAAGCCCTTGACAGCCTCCTA
GACGGACTCGCCTGGCGCCTCATTTCCACCCACCGTCCCTCCCTCGACTT
CCTTCTCCTGCCTCCCTCCTTACTCCCCTCCCTTCCCCTCCCCCTTCCTC
GCCCCTCTCTCCTCCACTCTCTTACCTCCCGCCGGGCCGCCCTTGCGCGT
GCCGCCAGCCAAGACAAAGAGCGGGCCGAGGCCGCAAGCGCGCGGAAAAT
GAGGGAAGAAACTTTAAAATTGAGCAGCAAACTCGCCTCTCTCAAGGTAG
AGCTCGCGCACGTGACCGCCGAAGAGACCCACGCGCTTGCCCCTCTCCTC
GCGGAGAAGGACCGCGTATGGGCCGCAATCAATGGCGGCAGCATCACGAG
CGAAGATTCAATCCCTCCCCCCGCCGCTTCACCGCTTCCTTCGTCGTTGC
AGGCCAAAATAGCGGCGCTTGATGAAGCTCGTGCTCAGATTCGGCAGGTG
CAAGATCGGGCAGCGGAGAAGAGGGGGAAAATAGAAGAGAGGATGGAGGC
GACGAGGGAAGAGGGAGAAAAGGCCGTGAGAATAGCGCGGGAGATGGGGT
TGGCTAAAGCGGCGGTGAGCGAAGGTATGCTTCACGTGGGCACCGAGGCA
CTGGCTCGGGAATTGCTGCAAGCGGTGGGGTTGATGGAAGCGGAGGGTGT
AGAAGCGACGAACAGGTAGGGAATGGGGAAGAAGGAGGTTGGTTTTTCTG
ATAGAATCGAAATATCAAAATCACTGAAAGAACACCAATGTCGAAGTAAT
CAAATGTAACGATAAGAAGCAGCAAACATAAAATCTTTCACTCGTG
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protein sequence of jgi.p|Nanoce1779_2|588300

>mRNA_4900-protein ID=mRNA_4900-protein|Name=jgi.p|Nanoce1779_2|588300|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MRRLWQQELKAALTHMHTSHKHKSRGRRGVGAGGGGEGGGVSKCSSGGGS
SNSNSNGRGSSNSSKALDSLLDGLAWRLISTHRPSLDFLLLPPSLLPSLP
LPLPRPSLLHSLTSRRAALARAASQDKERAEAASARKMREETLKLSSKLA
SLKVELAHVTAEETHALAPLLAEKDRVWAAINGGSITSEDSIPPPAASPL
PSSLQAKIAALDEARAQIRQVQDRAAEKRGKIEERMEATREEGEKAVRIA
REMGLAKAAVSEGMLHVGTEALARELLQAVGLMEAEGVEATNR*
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mRNA from alignment at scaffold_9:939117..941332-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4900 ID=mRNA_4900|Name=jgi.p|Nanoce1779_2|588300|organism=Nannochloropsis oceanica|type=mRNA|length=2216bp|location=Sequence derived from alignment at scaffold_9:939117..941332- (Nannochloropsis oceanica)
AGGTCCTGTCACTTCTTTCCCGCCCACGCGGCGAGCTTGTTATCTTCCGC
GAGGAGACACTGGTGGAGGAGGCGCTAGAGGGAAAGATGGCCTCGGCGGG
GTCCACAGCGTTCTTGCGACAGGTAGGGAGGAAGGGAGGGAGGGAGGGAG
GGAAAGAAGAGGGATGCTCTGGGAAGCAAGACCACGGTGTGAGTCTGCGT
TTCGTTCTTCATCTTCATCTCTGCCACCCTCTAGAGATGTTCACCCCTTC
CTCCCCCCCCCCATCCCTCTCTCCTTATCTTCCCCCCCCATCCCTCTCTC
CTTATCTTCCTCCCTCCCTCCGTCCCTCCCTCCGTCCCCCCCTCCTCCAG
CCGCACCTGCAAGCCATCACCTCTCGCCTGCGTCGCGCGTACCCTCGACT
AGCGCAGGCCATGGACCGGTGGCTGCTGGTGGAGCTGGAGGACGAGTACT
CCCCCCGGGCCTTGTCGCTCAAGGGTAGAGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAATGTCACAGGGGTGTATGTCCTCTGGGACTTTGACTG
ACTACCAACAACCGATCCCCTTACATTCCCTCCCTCCTCCTCTCCCTCCA
TCCCTCCTTCCTTCCCTCCTCCCCTCCATCCTTCCCTCCTTCCAGACCTG
CTCGCCATCCTCTCTTCCTGGCAGTGGGAAGTGCTCATTTCGGACCGCGA
ACCGCTTCGACGCCAGCTGGAGGAAAGCTTAAGGAGGGCTTTGCATGCTC
CACAGGTACCCTCCCCTCCCTCCCTCCCCTCCTTCCCTTCTACCTTCTAC
CTATCTTTCATTCCCTCCCCTCTTGCCCGCACTCAGACGCCCTCCTTTCC
TCTCTCCCTCCCTCCCCTCCTCCCTCCTATTACAGGGCCAAGGACCGAAA
GGCGACCTGGTAGAGTCCCTCCTCCTCATCGACAGCCACACCGACGCTCG
CTCCCTCTCCCTCCTCAAAACTCGCCTACCACGGGCCTTCGCCGCCTACC
AACGCGGAGAAGAGCGATTGGCCCATGCCCTGAGCATCTGGGAGGGTGGC
TCCCTCTCCTCCTTCCTCGAGACCTACCCGTCCTCCCTTCTCCTCCGACG
CATTAAAGGCCCTCTTTCTTTCTCCCTCTCCCGCTCCTCCTCTGCTACCC
CCCTCCTCCTCTTCCTTCTCCTCGCCCTCCCCCCCTTCCTCGCCCTTCGT
TATTCCTATGCGTCGTCTCTGGCAGCAAGAGCTGAAGGCCGCCCTAACTC
ACATGCACACTAGCCACAAGCACAAAAGCAGAGGACGGCGAGGTGTAGGA
GCAGGAGGAGGAGGGGAGGGTGGAGGTGTCAGCAAGTGCAGCAGCGGTGG
TGGCAGCAGTAATAGCAACAGCAACGGCCGTGGCAGCAGCAACAGCAGCA
AAGCCCTTGACAGCCTCCTAGACGGACTCGCCTGGCGCCTCATTTCCACC
CACCGTCCCTCCCTCGACTTCCTTCTCCTGCCTCCCTCCTTACTCCCCTC
CCTTCCCCTCCCCCTTCCTCGCCCCTCTCTCCTCCACTCTCTTACCTCCC
GCCGGGCCGCCCTTGCGCGTGCCGCCAGCCAAGACAAAGAGCGGGCCGAG
GCCGCAAGCGCGCGGAAAATGAGGGAAGAAACTTTAAAATTGAGCAGCAA
ACTCGCCTCTCTCAAGGTAGAGCTCGCGCACGTGACCGCCGAAGAGACCC
ACGCGCTTGCCCCTCTCCTCGCGGAGAAGGACCGCGTATGGGCCGCAATC
AATGGCGGCAGCATCACGAGCGAAGATTCAATCCCTCCCCCCGCCGCTTC
ACCGCTTCCTTCGTCGTTGCAGGCCAAAATAGCGGCGCTTGATGAAGCTC
GTGCTCAGATTCGGCAGGTGCAAGATCGGGCAGCGGAGAAGAGGGGGAAA
ATAGAAGAGAGGATGGAGGCGACGAGGGAAGAGGGAGAAAAGGCCGTGAG
AATAGCGCGGGAGATGGGGTTGGCTAAAGCGGCGGTGAGCGAAGGTATGC
TTCACGTGGGCACCGAGGCACTGGCTCGGGAATTGCTGCAAGCGGTGGGG
TTGATGGAAGCGGAGGGTGTAGAAGCGACGAACAGGTAGGGAATGGGGAA
GAAGGAGGTTGGTTTTTCTGATAGAATCGAAATATCAAAATCACTGAAAG
AACACCAATGTCGAAGTAATCAAATGTAACGATAAGAAGCAGCAAACATA
AAATCTTTCACTCGTG
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Coding sequence (CDS) from alignment at scaffold_9:939117..941332-

>mRNA_4900 ID=mRNA_4900|Name=jgi.p|Nanoce1779_2|588300|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_9:939117..941332- (Nannochloropsis oceanica)
ATGCGTCGTCTCTGGCAGCAAGAGCTGAAGGCCGCCCTAACTCACATGCA
CACTAGCCACAAGCACAAAAGCAGAGGACGGCGAGGTGTAGGAGCAGGAG
GAGGAGGGGAGGGTGGAGGTGTCAGCAAGTGCAGCAGCGGTGGTGGCAGC
AGTAATAGCAACAGCAACGGCCGTGGCAGCAGCAACAGCAGCAAAGCCCT
TGACAGCCTCCTAGACGGACTCGCCTGGCGCCTCATTTCCACCCACCGTC
CCTCCCTCGACTTCCTTCTCCTGCCTCCCTCCTTACTCCCCTCCCTTCCC
CTCCCCCTTCCTCGCCCCTCTCTCCTCCACTCTCTTACCTCCCGCCGGGC
CGCCCTTGCGCGTGCCGCCAGCCAAGACAAAGAGCGGGCCGAGGCCGCAA
GCGCGCGGAAAATGAGGGAAGAAACTTTAAAATTGAGCAGCAAACTCGCC
TCTCTCAAGGTAGAGCTCGCGCACGTGACCGCCGAAGAGACCCACGCGCT
TGCCCCTCTCCTCGCGGAGAAGGACCGCGTATGGGCCGCAATCAATGGCG
GCAGCATCACGAGCGAAGATTCAATCCCTCCCCCCGCCGCTTCACCGCTT
CCTTCGTCGTTGCAGGCCAAAATAGCGGCGCTTGATGAAGCTCGTGCTCA
GATTCGGCAGGTGCAAGATCGGGCAGCGGAGAAGAGGGGGAAAATAGAAG
AGAGGATGGAGGCGACGAGGGAAGAGGGAGAAAAGGCCGTGAGAATAGCG
CGGGAGATGGGGTTGGCTAAAGCGGCGGTGAGCGAAGGTATGCTTCACGT
GGGCACCGAGGCACTGGCTCGGGAATTGCTGCAAGCGGTGGGGTTGATGG
AAGCGGAGGGTGTAGAAGCGACGAACAGGTAG
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Synonyms
Publications