jgi.p|Nanoce1779_2|243528, mRNA_490 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|243528
Unique Name	mRNA_490
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1878
Alignment location	scaffold_3:1183444..1185548 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	243614
Track	FilteredModels2
ProteinId	243528

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1183444..1185548 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|243528	gene_490	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|243528	mRNA_490-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_490	CDS_490	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1183444..1185548-
coding sequence from alignment at scaffold_3:1183444..1185548-

mRNA sequence

>mRNA_490 ID=mRNA_490|Name=jgi.p|Nanoce1779_2|243528|organism=Nannochloropsis oceanica|type=mRNA|length=1878bp
CGCATGCCAAGAGATTCCTCTTTATGTGGCCTCCATTTGTCACTACACAT
GCTGCTGATGCATTCTGACGTGGTATGCTCCGAGTTGCTGACTCATTTCC
ACTTGCATGTACTCGCTCAACAAACTTGCCCAACAAGCAACCAAGCGCTC
GCCCTCCGAGCCTCTCTAAGAGTCTGAGTCAGCAATGACAATCCTGTCAC
CCACAACGCCTCGATCCAGCCCTATGATTGATCTCAGGCCATCGAGCACA
TACGCGCGACTAACTGCCTCTTTTCCTCCCACGCTCCCTTCCTCCTTCCT
CCCTTCTTCTCTTGTAGGTGGACCTACCGTCCTCCTCAACACCCAGGGAC
GGGACTGCACGGCACTCTTCGAGGCTTTCCACCCCTTCACTGACCGACCC
GCTACCATTTTGAGCAAAATGAAGGAGGTGACCGTCTCCCCCGAGGTCCT
CGCGGAGAAGTGCACGGACATTAGCAAGGGCAATTGGTTTTATCTGCCCG
ACGGGACCCCGGACCCGTTCTGGGCCGCGTTGAAGGAACGGTGTGGGAGA
TATATGCGGGAAAATAAGGTGGACAGGACGATGAAATGGTCGACATTCTT
GTTGCACGTCTTCTTGCTGTTAATCCAGCCGCCGATGTGGTGGTTTGGTT
ACGTGAATGCGTACCCGTGGTATTCGCACGCGGCGGCCTTGGCGATGGGG
GTGACGACCTGGATCGCGGGGAGGTTGGGCCATGACGGAGGGCATTTCGC
GATTTCGCGCAAATACTGGGTGAACCGCGTGTTCGGAAACTGGGCAGGCT
TGGGGTTGAGTAACATGAGCTATTGGGAAATCCTGCATAATGTGGACCAC
CACACGGACACCAACACGGAAAAGGATCCGGATTTGTACCACTACGTGAT
CTTCCTGCGGGACCATCCAAACTACCCGTGGTCCATCTTTCACCGGTTGC
AGGTGGCGAGGGTGTATTGCTACCTGGTGTGGAGCTTCACGACGGCGGGT
CTCTTAATGATCGAGCCCATGAACATGCTGTTGACCGGATCAGGCACCCG
CCCCCCGACGGTGAGGTTGGCAAATTTCCGGTTGTTCTTTTGGGTGAAAC
TCGTATTCCATATGCTCTTGTTCCCGACCGTGATGTTGGCAATCCCTATG
TGGTTGACGTGGGACAGCTCGGAGAATAAGTGGGTGGTGTTTGCCATCCG
ATTTGCGAGTTTTGTGATTTATTGCGGGGTGACGGGCTTGTTGTTTGGGA
TCTTCTCGCAGGTGAATCACTTCTCCGAGGACTGCATTGCGGCCGCCAGT
CGTGATACCTCCTGGGCCGTGCGCCAAGTAGAGACAGCGGCGAATTTCTG
CGTGGATTCATCGTTTTGGTCCTTGATCACTGCGGGTATCCACATCCAGA
TTGAGCACCATTTGTTCCCTTCCTTGTCCTCGGATCGTGTCTTGCCCCTT
GTTCCCATCGTGGAGGCGACGTGCAAGGAGTTTGGCGTTAATTACAAGAA
CTTCAAGACATTTCCTTCCATCCTGGACTCTGTCCATGCTTATATTGACA
CCTTGGCCTTCCCCAACAAGCCGGTGGTGGTGGCAGCGGAGGGGTCGACG
GGGATGGAGGGAGGGGTGGAGGGAGGGGCAGAGGGAGGGGCGGAGGGAGG
GGCGGAGTTGACGACAGTGACGTCGGAGGGGGTTAAGGCGTAAGTGAAGC
GAGGAGGGGAGGAAAGGAATATTGGGGGGATTAAATGCTGCGGATAGGAG
GAAGTGATGAAAGAGGGACAATGAGATGAAGAGAAGAAGACATGCACACA
CAACGACACACTGATACGCATGTCGGCGAGAGCAGAAGGAGCTTGTGGAT
GATTAACGGAGAGAACGGTAAGAGAGCG

protein sequence of jgi.p|Nanoce1779_2|243528

>mRNA_490-protein ID=mRNA_490-protein|Name=jgi.p|Nanoce1779_2|243528|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MTILSPTTPRSSPMIDLRPSSTYARLTASFPPTLPSSFLPSSLVGGPTVL
LNTQGRDCTALFEAFHPFTDRPATILSKMKEVTVSPEVLAEKCTDISKGN
WFYLPDGTPDPFWAALKERCGRYMRENKVDRTMKWSTFLLHVFLLLIQPP
MWWFGYVNAYPWYSHAAALAMGVTTWIAGRLGHDGGHFAISRKYWVNRVF
GNWAGLGLSNMSYWEILHNVDHHTDTNTEKDPDLYHYVIFLRDHPNYPWS
IFHRLQVARVYCYLVWSFTTAGLLMIEPMNMLLTGSGTRPPTVRLANFRL
FFWVKLVFHMLLFPTVMLAIPMWLTWDSSENKWVVFAIRFASFVIYCGVT
GLLFGIFSQVNHFSEDCIAAASRDTSWAVRQVETAANFCVDSSFWSLITA
GIHIQIEHHLFPSLSSDRVLPLVPIVEATCKEFGVNYKNFKTFPSILDSV
HAYIDTLAFPNKPVVVAAEGSTGMEGGVEGGAEGGAEGGAELTTVTSEGV
KA*

mRNA from alignment at scaffold_3:1183444..1185548-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_490 ID=mRNA_490|Name=jgi.p|Nanoce1779_2|243528|organism=Nannochloropsis oceanica|type=mRNA|length=2105bp|location=Sequence derived from alignment at scaffold_3:1183444..1185548- (Nannochloropsis oceanica)
CGCATGCCAAGAGATTCCTCTTTATGTGGCCTCCATTTGTCACTACACAT
GCTGCTGATGCATTCTGACGTGGTATGCTCCGAGTTGCTGACTCATTTCC
ACTTGCATGTACTCGCTCAACAAACTTGCCCAACAAGCAACCAAGCGCTC
GCCCTCCGAGCCTCTCTAAGAGTCTGAGTCAGCAATGACAATCCTGTCAC
CCACAACGCCTCGATCCAGCCCTATGATTGATCTCAGGCCATCGAGCACA
TACGCGCGACTAACTGCCTCTTTTCCTCCCACGCTCCCTTCCTCCTTCCT
CCCTTCTTCTCTTGTAGGTGGACCTACCGTCCTCCTCAACACCCAGGGAC
GGGACTGCACGGCACTCTTCGAGGCTTTCCACCCCTTCACTGACCGACCC
GCTACCATTTTGAGCAAAATGAAGGAGGTGTGTGCTTGCGCGAGGGAAGG
AGGGAAGGAAGGAGGGAAGGAAGGAGGAAGGGAAGAAGGAGGGAGGAAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGGTCTCATATCG
ATCAAGCCTAGCGCCAGGCGTAAATTTCTTCTTTCTTCTTGAATCCACCC
TCTGATGCAAGCACTCTTCCCCCCTCCCTCCTTCCTCATATTCTCCTTCT
TCAGGTGACCGTCTCCCCCGAGGTCCTCGCGGAGAAGTGCACGGACATTA
GCAAGGGCAATTGGTTTTATCTGCCCGACGGGACCCCGGACCCGTTCTGG
GCCGCGTTGAAGGAACGGTGTGGGAGATATATGCGGGAAAATAAGGTGGA
CAGGACGATGAAATGGTCGACATTCTTGTTGCACGTCTTCTTGCTGTTAA
TCCAGCCGCCGATGTGGTGGTTTGGTTACGTGAATGCGTACCCGTGGTAT
TCGCACGCGGCGGCCTTGGCGATGGGGGTGACGACCTGGATCGCGGGGAG
GTTGGGCCATGACGGAGGGCATTTCGCGATTTCGCGCAAATACTGGGTGA
ACCGCGTGTTCGGAAACTGGGCAGGCTTGGGGTTGAGTAACATGAGCTAT
TGGGAAATCCTGCATAATGTGGACCACCACACGGACACCAACACGGAAAA
GGATCCGGATTTGTACCACTACGTGATCTTCCTGCGGGACCATCCAAACT
ACCCGTGGTCCATCTTTCACCGGTTGCAGGTGGCGAGGGTGTATTGCTAC
CTGGTGTGGAGCTTCACGACGGCGGGTCTCTTAATGATCGAGCCCATGAA
CATGCTGTTGACCGGATCAGGCACCCGCCCCCCGACGGTGAGGTTGGCAA
ATTTCCGGTTGTTCTTTTGGGTGAAACTCGTATTCCATATGCTCTTGTTC
CCGACCGTGATGTTGGCAATCCCTATGTGGTTGACGTGGGACAGCTCGGA
GAATAAGTGGGTGGTGTTTGCCATCCGATTTGCGAGTTTTGTGATTTATT
GCGGGGTGACGGGCTTGTTGTTTGGGATCTTCTCGCAGGTGAATCACTTC
TCCGAGGACTGCATTGCGGCCGCCAGTCGTGATACCTCCTGGGCCGTGCG
CCAAGTAGAGACAGCGGCGAATTTCTGCGTGGATTCATCGTTTTGGTCCT
TGATCACTGCGGGTATCCACATCCAGATTGAGCACCATTTGTTCCCTTCC
TTGTCCTCGGATCGTGTCTTGCCCCTTGTTCCCATCGTGGAGGCGACGTG
CAAGGAGTTTGGCGTTAATTACAAGAACTTCAAGACATTTCCTTCCATCC
TGGACTCTGTCCATGCTTATATTGACACCTTGGCCTTCCCCAACAAGCCG
GTGGTGGTGGCAGCGGAGGGGTCGACGGGGATGGAGGGAGGGGTGGAGGG
AGGGGCAGAGGGAGGGGCGGAGGGAGGGGCGGAGTTGACGACAGTGACGT
CGGAGGGGGTTAAGGCGTAAGTGAAGCGAGGAGGGGAGGAAAGGAATATT
GGGGGGATTAAATGCTGCGGATAGGAGGAAGTGATGAAAGAGGGACAATG
AGATGAAGAGAAGAAGACATGCACACACAACGACACACTGATACGCATGT
CGGCGAGAGCAGAAGGAGCTTGTGGATGATTAACGGAGAGAACGGTAAGA
GAGCG

Coding sequence (CDS) from alignment at scaffold_3:1183444..1185548-

>mRNA_490 ID=mRNA_490|Name=jgi.p|Nanoce1779_2|243528|organism=Nannochloropsis oceanica|type=CDS|length=3018bp|location=Sequence derived from alignment at scaffold_3:1183444..1185548- (Nannochloropsis oceanica)
GTGACCGTCTCCCCCGAGGTCCTCGCGGAGAAGTGCACGGACATTAGCAA
GGGCAATTGGTTTTATCTGCCCGACGGGACCCCGGACCCGTTCTGGGCCG
CGTTGAAGGAACGGTGTGGGAGATATATGCGGGAAAATAAGGTGGACAGG
ACGATGAAATGGTCGACATTCTTGTTGCACGTCTTCTTGCTGTTAATCCA
GCCGCCGATGTGGTGGTTTGGTTACGTGAATGCGTACCCGTGGTATTCGC
ACGCGGCGGCCTTGGCGATGGGGGTGACGACCTGGATCGCGGGGAGGTTG
GGCCATGACGGAGGGCATTTCGCGATTTCGCGCAAATACTGGGTGAACCG
CGTGTTCGGAAACTGGGCAGGCTTGGGGTTGAGTAACATGAGCTATTGGG
AAATCCTGCATAATGTGGACCACCACACGGACACCAACACGGAAAAGGAT
CCGGATTTGTACCACTACGTGATCTTCCTGCGGGACCATCCAAACTACCC
GTGGTCCATCTTTCACCGGTTGCAGGTGGCGAGGGTGTATTGCTACCTGG
TGTGGAGCTTCACGACGGCGGGTCTCTTAATGATCGAGCCCATGAACATG
CTGTTGACCGGATCAGGCACCCGCCCCCCGACGGTGAGGTTGGCAAATTT
CCGGTTGTTCTTTTGGGTGAAACTCGTATTCCATATGCTCTTGTTCCCGA
CCGTGATGTTGGCAATCCCTATGTGGTTGACGTGGGACAGCTCGGAGAAT
AAGTGGGTGGTGTTTGCCATCCGATTTGCGAGTTTTGTGATTTATTGCGG
GGTGACGGGCTTGTTGTTTGGGATCTTCTCGCAGGTGAATCACTTCTCCG
AGGACTGCATTGCGGCCGCCAGTCGTGATACCTCCTGGGCCGTGCGCCAA
GTAGAGACAGCGGCGAATTTCTGCGTGGATTCATCGTTTTGGTCCTTGAT
CACTGCGGGTATCCACATCCAGATTGAGCACCATTTGTTCCCTTCCTTGT
CCTCGGATCGTGTCTTGCCCCTTGTTCCCATCGTGGAGGCGACGTGCAAG
GAGTTTGGCGTTAATTACAAGAACTTCAAGACATTTCCTTCCATCCTGGA
CTCTGTCCATGCTTATATTGACACCTTGGCCTTCCCCAACAAGCCGGTGG
TGGTGGCAGCGGAGGGGTCGACGGGGATGGAGGGAGGGGTGGAGGGAGGG
GCAGAGGGAGGGGCGGAGGGAGGGGCGGAGTTGACGACAGTGACGTCGGA
GGGGGTTAAGGCGTAAATGACAATCCTGTCACCCACAACGCCTCGATCCA
GCCCTATGATTGATCTCAGGCCATCGAGCACATACGCGCGACTAACTGCC
TCTTTTCCTCCCACGCTCCCTTCCTCCTTCCTCCCTTCTTCTCTTGTAGG
TGGACCTACCGTCCTCCTCAACACCCAGGGACGGGACTGCACGGCACTCT
TCGAGGCTTTCCACCCCTTCACTGACCGACCCGCTACCATTTTGAGCAAA
ATGAAGGAGGTGACCGTCTCCCCCGAGGTCCTCGCGGAGAAGTGCACGGA
CATTAGCAAGGGCAATTGGTTTTATCTGCCCGACGGGACCCCGGACCCGT
TCTGGGCCGCGTTGAAGGAACGGTGTGGGAGATATATGCGGGAAAATAAG
GTGGACAGGACGATGAAATGGTCGACATTCTTGTTGCACGTCTTCTTGCT
GTTAATCCAGCCGCCGATGTGGTGGTTTGGTTACGTGAATGCGTACCCGT
GGTATTCGCACGCGGCGGCCTTGGCGATGGGGGTGACGACCTGGATCGCG
GGGAGGTTGGGCCATGACGGAGGGCATTTCGCGATTTCGCGCAAATACTG
GGTGAACCGCGTGTTCGGAAACTGGGCAGGCTTGGGGTTGAGTAACATGA
GCTATTGGGAAATCCTGCATAATGTGGACCACCACACGGACACCAACACG
GAAAAGGATCCGGATTTGTACCACTACGTGATCTTCCTGCGGGACCATCC
AAACTACCCGTGGTCCATCTTTCACCGGTTGCAGGTGGCGAGGGTGTATT
GCTACCTGGTGTGGAGCTTCACGACGGCGGGTCTCTTAATGATCGAGCCC
ATGAACATGCTGTTGACCGGATCAGGCACCCGCCCCCCGACGGTGAGGTT
GGCAAATTTCCGGTTGTTCTTTTGGGTGAAACTCGTATTCCATATGCTCT
TGTTCCCGACCGTGATGTTGGCAATCCCTATGTGGTTGACGTGGGACAGC
TCGGAGAATAAGTGGGTGGTGTTTGCCATCCGATTTGCGAGTTTTGTGAT
TTATTGCGGGGTGACGGGCTTGTTGTTTGGGATCTTCTCGCAGGTGAATC
ACTTCTCCGAGGACTGCATTGCGGCCGCCAGTCGTGATACCTCCTGGGCC
GTGCGCCAAGTAGAGACAGCGGCGAATTTCTGCGTGGATTCATCGTTTTG
GTCCTTGATCACTGCGGGTATCCACATCCAGATTGAGCACCATTTGTTCC
CTTCCTTGTCCTCGGATCGTGTCTTGCCCCTTGTTCCCATCGTGGAGGCG
ACGTGCAAGGAGTTTGGCGTTAATTACAAGAACTTCAAGACATTTCCTTC
CATCCTGGACTCTGTCCATGCTTATATTGACACCTTGGCCTTCCCCAACA
AGCCGGTGGTGGTGGCAGCGGAGGGGTCGACGGGGATGGAGGGAGGGGTG
GAGGGAGGGGCAGAGGGAGGGGCGGAGGGAGGGGCGGAGTTGACGACAGT
GACGTCGGAGGGGGTTAAGGCGTAAATGACAATCCTGTCACCCACAACGC
CTCGATCCAGCCCTATGATTGATCTCAGGCCATCGAGCACATACGCGCGA
CTAACTGCCTCTTTTCCTCCCACGCTCCCTTCCTCCTTCCTCCCTTCTTC
TCTTGTAGGTGGACCTACCGTCCTCCTCAACACCCAGGGACGGGACTGCA
CGGCACTCTTCGAGGCTTTCCACCCCTTCACTGACCGACCCGCTACCATT
TTGAGCAAAATGAAGGAG

Synonyms

Publications