jgi.p|Nanoce1779_2|447125, mRNA_4899 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|447125
Unique NamemRNA_4899
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1280
Alignment locationscaffold_9:937783..939062 -

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Properties
Property NameValue
TranscriptId447211
TrackFilteredModels2
ProteinId447125
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:937783..939062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|447125gene_4899Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|447125mRNA_4899-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4899CDS_4899Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4899 ID=mRNA_4899|Name=jgi.p|Nanoce1779_2|447125|organism=Nannochloropsis oceanica|type=mRNA|length=1280bp
CTGTATGCTCCCAAACGCAGCGAGTTTACCCCCCACCCTTTTACACATGA
CGTCCAGGCACCTGCATGCTCACCAAAAAATGTTCTGCTTGGCGATATTA
CGACGCCTTCAAGCGTCTTGCATCTATCTCGAACGCAACGTATGGTTTGT
ATGTTGCGAGCCTTTGCAAACCGTTCACTACCATCGCCTCCCCACTCCAC
AGCGACACAAAAGCACCACGTTACCACAACAACAAACATGTCAGAACACG
AACTCCGCATCGCCACCGAGGAGCAAGAGAACATTCAATCTGGGAGGACC
GCCGGAGCCAAGAAGCAGGGTAAGAAGAGCAAGGCCAAGCCTGTCGCGGC
GACGGACATGGAGTCGGTCCTGCAAGCAGGGAAGCATGTAGTGCCCTTGA
CCAGGAAGGATGCGGCAGTCCTGCAGAGCATGGAGGCCCACGGCAAGTCG
GGTCAAGGGACTAAAATGTCGACGAAGAAGAGGGAAGAAGGGGGCTTGTT
GCCCAAGGTTGAGAGCGTTGCGGCCAAGGAAAAAGAGGTGGTGACGCAGA
GCCAGGAAGAGTACGCGAAATTGGAAGCAGCGAAGGAGGTAGCGAGAAAT
GAGGGGCTGTACACCACGCGCGGAGAGAAGAAAAAGAAGAAGAAGAAGAA
GGAGCAGCAACAGCGGCCATTCGCTGGAGGACAGGAGGAAGTGTTAGAGA
TTTGGCCCGAAAAAAAAGATGTCGTGCAATTGATTAGCATGGTGGAACGC
GCTGGTACCCTAAATGGCGTGTCCCTGATTAAAGGTGGGGCTGTGGCGCG
ATTGCAAAGTGCGGCCGATCGGGGAAAATCGTGTAAGGTGCCAAAGAAGG
TATCGGATCTTTGGGTGGAAGCCAAGTCGCAGCGGCCCAAGGATATTAAG
ACGCGGGCCGAGGCGCAGATGCTGCGAATGGATTTCGGGAAGGGCAAGCT
GGGAGAGGGAGGGAGGGCTACCAACAGCGGCGGAGACGGCAGCACTGCAG
CGAAGAAAGGCACACCGAAGCTTGTGCGGATGTTTGACAAATTGACGGTA
GATGTACCCACGTCGCCTGTGGTACAGCCGCAGCAGCCGCAGCAGGTGGA
GATGAGGCCGTCGGAAGGAGAGTGGGAGGAGGGTTAAATGATGAGAGAAG
AAATATGGAAGCGAATAAATAACGGAAGAAGAGACAGTACCCTAGAGGAA
ACGGGCTTCGAAATAGATTGAGAATATGATAGAATAAAAGACAAAAGGTG
GTGAGAGCGGGGGAGGTAGAGAGACGTATG
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protein sequence of jgi.p|Nanoce1779_2|447125

>mRNA_4899-protein ID=mRNA_4899-protein|Name=jgi.p|Nanoce1779_2|447125|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
LYAPKRSEFTPHPFTHDVQAPACSPKNVLLGDITTPSSVLHLSRTQRMVC
MLRAFANRSLPSPPHSTATQKHHVTTTTNMSEHELRIATEEQENIQSGRT
AGAKKQGKKSKAKPVAATDMESVLQAGKHVVPLTRKDAAVLQSMEAHGKS
GQGTKMSTKKREEGGLLPKVESVAAKEKEVVTQSQEEYAKLEAAKEVARN
EGLYTTRGEKKKKKKKKEQQQRPFAGGQEEVLEIWPEKKDVVQLISMVER
AGTLNGVSLIKGGAVARLQSAADRGKSCKVPKKVSDLWVEAKSQRPKDIK
TRAEAQMLRMDFGKGKLGEGGRATNSGGDGSTAAKKGTPKLVRMFDKLTV
DVPTSPVVQPQQPQQVEMRPSEGEWEEG*
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mRNA from alignment at scaffold_9:937783..939062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4899 ID=mRNA_4899|Name=jgi.p|Nanoce1779_2|447125|organism=Nannochloropsis oceanica|type=mRNA|length=1280bp|location=Sequence derived from alignment at scaffold_9:937783..939062- (Nannochloropsis oceanica)
CTGTATGCTCCCAAACGCAGCGAGTTTACCCCCCACCCTTTTACACATGA
CGTCCAGGCACCTGCATGCTCACCAAAAAATGTTCTGCTTGGCGATATTA
CGACGCCTTCAAGCGTCTTGCATCTATCTCGAACGCAACGTATGGTTTGT
ATGTTGCGAGCCTTTGCAAACCGTTCACTACCATCGCCTCCCCACTCCAC
AGCGACACAAAAGCACCACGTTACCACAACAACAAACATGTCAGAACACG
AACTCCGCATCGCCACCGAGGAGCAAGAGAACATTCAATCTGGGAGGACC
GCCGGAGCCAAGAAGCAGGGTAAGAAGAGCAAGGCCAAGCCTGTCGCGGC
GACGGACATGGAGTCGGTCCTGCAAGCAGGGAAGCATGTAGTGCCCTTGA
CCAGGAAGGATGCGGCAGTCCTGCAGAGCATGGAGGCCCACGGCAAGTCG
GGTCAAGGGACTAAAATGTCGACGAAGAAGAGGGAAGAAGGGGGCTTGTT
GCCCAAGGTTGAGAGCGTTGCGGCCAAGGAAAAAGAGGTGGTGACGCAGA
GCCAGGAAGAGTACGCGAAATTGGAAGCAGCGAAGGAGGTAGCGAGAAAT
GAGGGGCTGTACACCACGCGCGGAGAGAAGAAAAAGAAGAAGAAGAAGAA
GGAGCAGCAACAGCGGCCATTCGCTGGAGGACAGGAGGAAGTGTTAGAGA
TTTGGCCCGAAAAAAAAGATGTCGTGCAATTGATTAGCATGGTGGAACGC
GCTGGTACCCTAAATGGCGTGTCCCTGATTAAAGGTGGGGCTGTGGCGCG
ATTGCAAAGTGCGGCCGATCGGGGAAAATCGTGTAAGGTGCCAAAGAAGG
TATCGGATCTTTGGGTGGAAGCCAAGTCGCAGCGGCCCAAGGATATTAAG
ACGCGGGCCGAGGCGCAGATGCTGCGAATGGATTTCGGGAAGGGCAAGCT
GGGAGAGGGAGGGAGGGCTACCAACAGCGGCGGAGACGGCAGCACTGCAG
CGAAGAAAGGCACACCGAAGCTTGTGCGGATGTTTGACAAATTGACGGTA
GATGTACCCACGTCGCCTGTGGTACAGCCGCAGCAGCCGCAGCAGGTGGA
GATGAGGCCGTCGGAAGGAGAGTGGGAGGAGGGTTAAATGATGAGAGAAG
AAATATGGAAGCGAATAAATAACGGAAGAAGAGACAGTACCCTAGAGGAA
ACGGGCTTCGAAATAGATTGAGAATATGATAGAATAAAAGACAAAAGGTG
GTGAGAGCGGGGGAGGTAGAGAGACGTATG
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Coding sequence (CDS) from alignment at scaffold_9:937783..939062-

>mRNA_4899 ID=mRNA_4899|Name=jgi.p|Nanoce1779_2|447125|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at scaffold_9:937783..939062- (Nannochloropsis oceanica)
CTGTATGCTCCCAAACGCAGCGAGTTTACCCCCCACCCTTTTACACATGA
CGTCCAGGCACCTGCATGCTCACCAAAAAATGTTCTGCTTGGCGATATTA
CGACGCCTTCAAGCGTCTTGCATCTATCTCGAACGCAACGTATGGTTTGT
ATGTTGCGAGCCTTTGCAAACCGTTCACTACCATCGCCTCCCCACTCCAC
AGCGACACAAAAGCACCACGTTACCACAACAACAAACATGTCAGAACACG
AACTCCGCATCGCCACCGAGGAGCAAGAGAACATTCAATCTGGGAGGACC
GCCGGAGCCAAGAAGCAGGGTAAGAAGAGCAAGGCCAAGCCTGTCGCGGC
GACGGACATGGAGTCGGTCCTGCAAGCAGGGAAGCATGTAGTGCCCTTGA
CCAGGAAGGATGCGGCAGTCCTGCAGAGCATGGAGGCCCACGGCAAGTCG
GGTCAAGGGACTAAAATGTCGACGAAGAAGAGGGAAGAAGGGGGCTTGTT
GCCCAAGGTTGAGAGCGTTGCGGCCAAGGAAAAAGAGGTGGTGACGCAGA
GCCAGGAAGAGTACGCGAAATTGGAAGCAGCGAAGGAGGTAGCGAGAAAT
GAGGGGCTGTACACCACGCGCGGAGAGAAGAAAAAGAAGAAGAAGAAGAA
GGAGCAGCAACAGCGGCCATTCGCTGGAGGACAGGAGGAAGTGTTAGAGA
TTTGGCCCGAAAAAAAAGATGTCGTGCAATTGATTAGCATGGTGGAACGC
GCTGGTACCCTAAATGGCGTGTCCCTGATTAAAGGTGGGGCTGTGGCGCG
ATTGCAAAGTGCGGCCGATCGGGGAAAATCGTGTAAGGTGCCAAAGAAGG
TATCGGATCTTTGGGTGGAAGCCAAGTCGCAGCGGCCCAAGGATATTAAG
ACGCGGGCCGAGGCGCAGATGCTGCGAATGGATTTCGGGAAGGGCAAGCT
GGGAGAGGGAGGGAGGGCTACCAACAGCGGCGGAGACGGCAGCACTGCAG
CGAAGAAAGGCACACCGAAGCTTGTGCGGATGTTTGACAAATTGACGGTA
GATGTACCCACGTCGCCTGTGGTACAGCCGCAGCAGCCGCAGCAGGTGGA
GATGAGGCCGTCGGAAGGAGAGTGGGAGGAGGGTTAA
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Synonyms
Publications