jgi.p|Nanoce1779_2|527709, mRNA_4898 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|527709
Unique Name	mRNA_4898
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	915
Alignment location	scaffold_9:936542..937615 +

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Properties


Property Name	Value
TranscriptId	527795
Track	FilteredModels2
ProteinId	527709

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:936542..937615 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527709	gene_4898	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527709	mRNA_4898-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4898	CDS_4898	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:936542..937615+
coding sequence from alignment at scaffold_9:936542..937615+

mRNA sequence

>mRNA_4898 ID=mRNA_4898|Name=jgi.p|Nanoce1779_2|527709|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGAGTAGTGTAGGCAGAGGGAAGGTATTCAGAGGAGAGGTGGCGGAAGC
TGAGGGAAGAGGGGACTTGCCATCGCCCTTACGGCGGCTCATTCAAGCGA
CTCGACATCGGGCCTTGAGCAAGGGCAAGCTGGGTTTGGGCGGTACCTCG
GCTTTCACCCCCGCCCTCCAACCACTGGCCACCACGTGGGAGATCGTCCG
TGATAAGCACGTCGACTTCATCATATCAGAAATCAAACCGGAAGCATTGA
ATCATAAAAAGGCAGCACAATCCCACTCTATCGCCCTCCCCTCCTCCTCC
AGAGACCCCTTCGGCGAGGGGCAACGCGAACCGCTCCTAACCGTAAGCGA
GGTCGGCAAACGGCACGTGCTAATGCTGAACAAGTATCCCACCATGCCCG
ACCATCTCCTCCTCGTCACCAAGGAATGGCAGCCCCAGCAAGGGCTGCTG
ACGGCCGAGGACCTCAGTGCCTGGCATGGGCTCATCCACGACGTTCCGGC
CGTCGGTATCTTCAATTCTGGACCCGAGGCAGGCGCCAGCCAGGGCCACC
GACACCTTCAAGCCATACCCCTTGACACTCTTCGCTCCTACCGCCCCTCC
CTCCTTCCCTCCCCCAGCCCCTCGCACGTCGTCCCGATCGAGGCGCTGAT
CGAACCGCACTTCGCCTCCCTCCCTTCCTCCTCCTCCTCTTTCCACGTCG
GGTACGACTACGTCGACAAGGCTTATAACCTGGTCATGACGGAGAAGTGG
CTCATGGCGGTGCCGAGGTCAAAAGGTAGCTACGTGGGCGTAGCTGTGAA
TGGGATGGGTTTCATGGGATGTCTATTGTCGAGAGATAAGAATACAACAG
AGGTATTAAAGCAGGTGAAGCCTTTCAATGTCCTACGAGGGGTGGCAGGG
GCAGCAGGGGCGTGA

protein sequence of jgi.p|Nanoce1779_2|527709

>mRNA_4898-protein ID=mRNA_4898-protein|Name=jgi.p|Nanoce1779_2|527709|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MSSVGRGKVFRGEVAEAEGRGDLPSPLRRLIQATRHRALSKGKLGLGGTS
AFTPALQPLATTWEIVRDKHVDFIISEIKPEALNHKKAAQSHSIALPSSS
RDPFGEGQREPLLTVSEVGKRHVLMLNKYPTMPDHLLLVTKEWQPQQGLL
TAEDLSAWHGLIHDVPAVGIFNSGPEAGASQGHRHLQAIPLDTLRSYRPS
LLPSPSPSHVVPIEALIEPHFASLPSSSSSFHVGYDYVDKAYNLVMTEKW
LMAVPRSKGSYVGVAVNGMGFMGCLLSRDKNTTEVLKQVKPFNVLRGVAG
AAGA*

mRNA from alignment at scaffold_9:936542..937615+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4898 ID=mRNA_4898|Name=jgi.p|Nanoce1779_2|527709|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp|location=Sequence derived from alignment at scaffold_9:936542..937615+ (Nannochloropsis oceanica)
ATGAGTAGTGTAGGCAGAGGGAAGGTATTCAGAGGAGAGGTGGCGGAAGC
TGAGGGAAGAGGGGACTTGCCATCGCCCTTACGGCGGCTCATTCAAGCGA
CTCGACATCGGGCCTTGAGCAAGGGCAAGCTGGGTTTGGGCGGTACCTCG
GCTTTCACCCCCGCCCTCCAACCACTGGCCACCACGTGGGAGATCGTCCG
TGATAAGCACGTCGACTTCATCATATCAGAAATCAAACCGGAAGCATTGA
ATCATAAAAAGGCAGCACAATCCCACTCTATCGCCCTCCCCTCCTCCTCC
AGAGACCCCTTCGGCGAGGGGCAACGCGAACCGCTCCTAACCGTAAGCGA
GGTCGGCAAACGGCACGTGCTAATGCTGAACAAGTATCCCACCATGCCCG
ACCATCTCCTCCTCGTCACCAAGGAATGGCAGCCCCAGCAAGGGCTGCTG
ACGGCCGAGGACCTCAGTGCCTGGCATGGGCTCATCCACGACGTTCCGGC
CGTCGGTATCTTCAATTCTGGACCCGAGGCAGGCGCCAGCCAGGGCCACC
GACACCTTCAAGCCATACCCCTTGACACTCTTCGCTCCTACCGCCCCTCC
CTCCTTCCCTCCCCCAGCCCCTCGCACGTCGTCCCGATCGAGGCGCTGAT
CGAACCGCACTTCGCCTCCCTCCCTTCCTCCTCCTCCTCTTTCCACGTCC
CGTCCCTCCCCTTCCAACATCGTCTCTTCCCCCTCCCTCATTCCCCCACC
CCCAACCAGCTCGAAGCCCTCTACATTCATCTGCTCAAGCAGATCGAAGT
ACTCGACCCAGCAGGAGGAGGACGAGGAGGAGGAGGGCGGGAGGGAGGAA
ATGAGGTCGGGTACGACTACGTCGACAAGGCTTATAACCTGGTCATGACG
GAGAAGTGGCTCATGGCGGTGCCGAGGTCAAAAGGTAGCTACGTGGGCGT
AGCTGTGAATGGGATGGGTTTCATGGGATGTCTATTGTCGAGAGATAAGA
ATACAACAGAGGTATTAAAGCAGGTGAAGCCTTTCAATGTCCTACGAGGG
GTGGCAGGGGCAGCAGGGGCGTGA

Coding sequence (CDS) from alignment at scaffold_9:936542..937615+

>mRNA_4898 ID=mRNA_4898|Name=jgi.p|Nanoce1779_2|527709|organism=Nannochloropsis oceanica|type=CDS|length=1830bp|location=Sequence derived from alignment at scaffold_9:936542..937615+ (Nannochloropsis oceanica)
ATGAGTAGTGTAGGCAGAGGGAAGGTATTCAGAGGAGAGGTGGCGGAAGC
TGAGGGAAGAGGGGACTTGCCATCGCCCTTACGGCGGCTCATTCAAGCGA
CTCGACATCGGGCCTTGAGCAAGGGCAAGCTGGGTTTGGGCGGTACCTCG
GCTTTCACCCCCGCCCTCCAACCACTGGCCACCACGTGGGAGATCGTCCG
TGATAAGCACGTCGACTTCATCATATCAGAAATCAAACCGGAAGCATTGA
ATCATAAAAAGGCAGCACAATCCCACTCTATCGCCCTCCCCTCCTCCTCC
AGAGACCCCTTCGGCGAGGGGCAACGCGAACCGCTCCTAACCGTAAGCGA
GGTCGGCAAACGGCACGTGCTAATGCTGAACAAGTATCCCACCATGCCCG
ACCATCTCCTCCTCGTCACCAAGGAATGGCAGCCCCAGCAAGGGCTGCTG
ACGGCCGAGGACCTCAGTGCCTGGCATGGGCTCATCCACGACGTTCCGGC
CGTCGGTATCTTCAATTCTGGACCCGAGGCAGGCGCCAGCCAGGGCCACC
GACACCTTCAAGCCATACCCCTTGACACTCTTCGCTCCTACCGCCCCTCC
CTCCTTCCCTCCCCCAGCCCCTCGCACGTCGTCCCGATCGAGGCGCTGAT
CGAACCGCACTTCGCCTCCCTCCCTTCCTCCTCCTCCTCTTTCCACGTCG
GGTACGACTACGTCGACAAGGCTTATAACCTGGTCATGACGGAGAAGTGG
CTCATGGCGGTGCCGAGGTCAAAAGGTAGCTACGTGGGCGTAGCTGTGAA
TGGGATGGGTTTCATGGGATGTCTATTGTCGAGAGATAAGAATACAACAG
AGGTATTAAAGCAGGTGAAGCCTTTCAATGTCCTACGAGGGGTGGCAGGG
GCAGCAGGGGCGTGAATGAGTAGTGTAGGCAGAGGGAAGGTATTCAGAGG
AGAGGTGGCGGAAGCTGAGGGAAGAGGGGACTTGCCATCGCCCTTACGGC
GGCTCATTCAAGCGACTCGACATCGGGCCTTGAGCAAGGGCAAGCTGGGT
TTGGGCGGTACCTCGGCTTTCACCCCCGCCCTCCAACCACTGGCCACCAC
GTGGGAGATCGTCCGTGATAAGCACGTCGACTTCATCATATCAGAAATCA
AACCGGAAGCATTGAATCATAAAAAGGCAGCACAATCCCACTCTATCGCC
CTCCCCTCCTCCTCCAGAGACCCCTTCGGCGAGGGGCAACGCGAACCGCT
CCTAACCGTAAGCGAGGTCGGCAAACGGCACGTGCTAATGCTGAACAAGT
ATCCCACCATGCCCGACCATCTCCTCCTCGTCACCAAGGAATGGCAGCCC
CAGCAAGGGCTGCTGACGGCCGAGGACCTCAGTGCCTGGCATGGGCTCAT
CCACGACGTTCCGGCCGTCGGTATCTTCAATTCTGGACCCGAGGCAGGCG
CCAGCCAGGGCCACCGACACCTTCAAGCCATACCCCTTGACACTCTTCGC
TCCTACCGCCCCTCCCTCCTTCCCTCCCCCAGCCCCTCGCACGTCGTCCC
GATCGAGGCGCTGATCGAACCGCACTTCGCCTCCCTCCCTTCCTCCTCCT
CCTCTTTCCACGTCGGGTACGACTACGTCGACAAGGCTTATAACCTGGTC
ATGACGGAGAAGTGGCTCATGGCGGTGCCGAGGTCAAAAGGTAGCTACGT
GGGCGTAGCTGTGAATGGGATGGGTTTCATGGGATGTCTATTGTCGAGAG
ATAAGAATACAACAGAGGTATTAAAGCAGGTGAAGCCTTTCAATGTCCTA
CGAGGGGTGGCAGGGGCAGCAGGGGCGTGA

Synonyms

Publications