jgi.p|Nanoce1779_2|588289, mRNA_4896 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|588289
Unique Name	mRNA_4896
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2236
Alignment location	scaffold_9:930984..933411 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	588375
Track	FilteredModels2
ProteinId	588289

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:930984..933411 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588289	gene_4896	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|588289	mRNA_4896-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4896	CDS_4896	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:930984..933411+
coding sequence from alignment at scaffold_9:930984..933411+

mRNA sequence

>mRNA_4896 ID=mRNA_4896|Name=jgi.p|Nanoce1779_2|588289|organism=Nannochloropsis oceanica|type=mRNA|length=2236bp
AGAAGATGGGTTCTAGTCTAAAGGAGCAAGAGCAGACTGCCACCAAAGTC
TTTGCGTTGGGATTCTGGTCTTCTTTCCTTGCTCCTCGTTCGTCCACGGC
GCCATCATCCACCTCCCGCCCTGCTGCCTCCTCGTCTTCACCGCCCTCAT
CCTCATCGACATCATCCAAGCGTCGCAAGAATAACTACACCATTTCCGCC
CCCACCATCACTAGCACCAATACCATAGCCACCCTCTTCCTCTACCTCCT
CCTCGCCCTCCTCCCCTCCCTCGCTCCTGCCCTCCACTTCGGGGACGTCC
GTTACTTTTCGCATGACGCCACCAAGACCTTGCATCACAATTTATCCACG
CTTCTTGAAAAGGGAGATATTAATGGTGCGTACATCATGGGTAGCAAAGA
CGGGGAGATCGTCTTACAAGAATCGGTCGGGTATAAACATCAGGGCCCTC
ACCCGTTGTTCCGCCTCTTTTCTATGACCAAGCCCGTGACGGCTGTTCTG
GCCTTGCAGCTAGTGGAAGAGGGAAAGATGGGATTAGATGACGAAATTGC
CGAGTATTTACCAGAGCTTGCTCACTTGAGAGTGTACGATGGTCTGTCGG
TATTGATGGAGGAGGGCATGACTGGGCTGGCATCGTTGCTTGGTAGAAAC
AGCAGCAGCAGCAACAGCAGCAGCAGCAGTAATAGCAGTAGCAATAAACC
CCAGCACCACCATCATCGACAGAACTTCCTGTCTCACCCCGCCACCAAAA
ACGCGACCATTCGGGAGCTCCTCACGCACACCGCGGGGTTTGCCTACGGC
GATAACATCAGCCACCCGATCGACCAAGCCTACGACGAGGCCATGCTCGT
GGATTTCTACGATCACAGTGAATTCGATTTCTTGCAGGAGTTGGCCAGCA
TTCCCTTGCTATCCGAGCCAGGAACGGAGTTTCATTATTCGCTTGGCTTT
GATGTGCTAGGGGTGCTGGTGAGCAGGGTGGGAGGGAAGCCTTTGGATGT
GTTGATGAAGGAGAGGGTTTTCGAGCCGTTAGGGATGAAGGAGACAGGAT
TCAGCATTCCCATGAACAAGATGTGGAGGATGGCGCGCATGAAAATACAA
GGGGACCTTGGGACGGGCTTTGTGGGAGACTTGGCGGGACTAAGGGCAAT
GGAGGAGCCGTCATTCAAGAGTGGAGGAGGTGGTTTGATAAGCACAGCGC
AGGATTATCTGAAACTAGCGCACATGCTGCTGAATGGAGGAAGGAACGCG
AGTGGGATGCAGGTATTGGGGGAGGAGAGTGTGCGGGCTATGACGACCAA
CCAGCTGTTGCCGGCACAGTTGCCGTATCACATGACGAGCTTTCCTGATT
ATGAGGGCAGTGGGTTCGGATATGGGGTGATGGTGATAGGCGAGGAGGAG
GTGAGCTTGTCGAGCCCGCAGGGAGAGGTGAGCTGGGCGGGGATGGCGAG
TAATAGTTGGTGGATCTCGCCGAGCCACGGTACGGCCTTGGTGGCGATGA
CGCAGCATTTGCCGTACAGTAGCGCGATGGAGGAGGTTGTAAAGCCCTTC
TTTTATGCGCCTTTCCTGGGGGCGGAGACGGAGATGAGGAAAAAGTGGGA
GGGCGAGAAGGAGGGAGGAAGGAATAAGAAGGGCCTGCGAGGAAATGGTC
AAGAGAAGTCGTAGTGTTTGAGGGAGAAAAAGGGATGAGAGGGTGGATGG
TGAGGGCCAGTGTCTGCATCTGTTGTTTAAAAACAAATTGACAGAGAATA
ATCAAAACACCTCATCGGTCTGAAAGGAGTGTATCGTGACTAGGACTAGA
TAAGGGAGGACAGGAAAGGAGAGGAAATGAAATCTCAAAAGAGGAGAAAC
AGCGAAAAGTGTCAGATGTCTGCGATGATGCGGGGAATGGTATTAATTTT
TTGCAGCAGATTTCCAATAAGCTTGCAAAACAAGAAGGGGGAAAAGAGAA
AGAATAAGAGTGAGTGGATGGCATGATGTAATGTAACTTCCTCCTTCTCC
CGAATTGGATAAAGAGAAATTATATGTACATGGCTGCTGGGCTGGGAGTC
AGACGAAGCGAACATGTTTGGATATAAATACGCGGTGTTATGTGCTTGAG
AAGGCAAGGATGCCAAGAAGTACACGTTTGAGATTTGAAAGGAGAAATTG
TGATATAATTTGGAGCAAGAGGAAGAAGAAAAGGTGTTCGCTGGCAAAAT
AGATGGAAAGCGTTCCCTCCTGCGCCATTTTCATTT

protein sequence of jgi.p|Nanoce1779_2|588289

>mRNA_4896-protein ID=mRNA_4896-protein|Name=jgi.p|Nanoce1779_2|588289|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MGSSLKEQEQTATKVFALGFWSSFLAPRSSTAPSSTSRPAASSSSPPSSS
STSSKRRKNNYTISAPTITSTNTIATLFLYLLLALLPSLAPALHFGDVRY
FSHDATKTLHHNLSTLLEKGDINGAYIMGSKDGEIVLQESVGYKHQGPHP
LFRLFSMTKPVTAVLALQLVEEGKMGLDDEIAEYLPELAHLRVYDGLSVL
MEEGMTGLASLLGRNSSSSNSSSSSNSSSNKPQHHHHRQNFLSHPATKNA
TIRELLTHTAGFAYGDNISHPIDQAYDEAMLVDFYDHSEFDFLQELASIP
LLSEPGTEFHYSLGFDVLGVLVSRVGGKPLDVLMKERVFEPLGMKETGFS
IPMNKMWRMARMKIQGDLGTGFVGDLAGLRAMEEPSFKSGGGGLISTAQD
YLKLAHMLLNGGRNASGMQVLGEESVRAMTTNQLLPAQLPYHMTSFPDYE
GSGFGYGVMVIGEEEVSLSSPQGEVSWAGMASNSWWISPSHGTALVAMTQ
HLPYSSAMEEVVKPFFYAPFLGAETEMRKKWEGEKEGGRNKKGLRGNGQE
KS*

mRNA from alignment at scaffold_9:930984..933411+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4896 ID=mRNA_4896|Name=jgi.p|Nanoce1779_2|588289|organism=Nannochloropsis oceanica|type=mRNA|length=2428bp|location=Sequence derived from alignment at scaffold_9:930984..933411+ (Nannochloropsis oceanica)
AGAAGATGGGTTCTAGTCTAAAGGAGCAAGAGCAGACTGCCACCAAAGTC
TTTGCGTTGGGATTCTGGTACGTATAAGAACAGGTGTCTACCCTTCTTGC
CTTGTCCAAGGGGTGCTTCCCCACGATGCGATCCACGGCAACATCGAATG
GATCAATCATAACAAATATTTGTTTATCAGATTATCCAATTAAGCAGCAT
GCAAGCATTCATCACCTCATCGTTCTCCCTCCTTTCCTTCCACCCTTCGT
CGTCCCAAGGTCTTCTTTCCTTGCTCCTCGTTCGTCCACGGCGCCATCAT
CCACCTCCCGCCCTGCTGCCTCCTCGTCTTCACCGCCCTCATCCTCATCG
ACATCATCCAAGCGTCGCAAGAATAACTACACCATTTCCGCCCCCACCAT
CACTAGCACCAATACCATAGCCACCCTCTTCCTCTACCTCCTCCTCGCCC
TCCTCCCCTCCCTCGCTCCTGCCCTCCACTTCGGGGACGTCCGTTACTTT
TCGCATGACGCCACCAAGACCTTGCATCACAATTTATCCACGCTTCTTGA
AAAGGGAGATATTAATGGTGCGTACATCATGGGTAGCAAAGACGGGGAGA
TCGTCTTACAAGAATCGGTCGGGTATAAACATCAGGGCCCTCACCCGTTG
TTCCGCCTCTTTTCTATGACCAAGCCCGTGACGGCTGTTCTGGCCTTGCA
GCTAGTGGAAGAGGGAAAGATGGGATTAGATGACGAAATTGCCGAGTATT
TACCAGAGCTTGCTCACTTGAGAGTGTACGATGGTCTGTCGGTATTGATG
GAGGAGGGCATGACTGGGCTGGCATCGTTGCTTGGTAGAAACAGCAGCAG
CAGCAACAGCAGCAGCAGCAGTAATAGCAGTAGCAATAAACCCCAGCACC
ACCATCATCGACAGAACTTCCTGTCTCACCCCGCCACCAAAAACGCGACC
ATTCGGGAGCTCCTCACGCACACCGCGGGGTTTGCCTACGGCGATAACAT
CAGCCACCCGATCGACCAAGCCTACGACGAGGCCATGCTCGTGGATTTCT
ACGATCACAGTGAATTCGATTTCTTGCAGGAGTTGGCCAGCATTCCCTTG
CTATCCGAGCCAGGAACGGAGTTTCATTATTCGCTTGGCTTTGATGTGCT
AGGGGTGCTGGTGAGCAGGGTGGGAGGGAAGCCTTTGGATGTGTTGATGA
AGGAGAGGGTTTTCGAGCCGTTAGGGATGAAGGAGACAGGATTCAGCATT
CCCATGAACAAGATGTGGAGGATGGCGCGCATGAAAATACAAGGGGACCT
TGGGACGGGCTTTGTGGGAGACTTGGCGGGACTAAGGGCAATGGAGGAGC
CGTCATTCAAGAGTGGAGGAGGTGGTTTGATAAGCACAGCGCAGGATTAT
CTGAAACTAGCGCACATGCTGCTGAATGGAGGAAGGAACGCGAGTGGGAT
GCAGGTATTGGGGGAGGAGAGTGTGCGGGCTATGACGACCAACCAGCTGT
TGCCGGCACAGTTGCCGTATCACATGACGAGCTTTCCTGATTATGAGGGC
AGTGGGTTCGGATATGGGGTGATGGTGATAGGCGAGGAGGAGGTGAGCTT
GTCGAGCCCGCAGGGAGAGGTGAGCTGGGCGGGGATGGCGAGTAATAGTT
GGTGGATCTCGCCGAGCCACGGTACGGCCTTGGTGGCGATGACGCAGCAT
TTGCCGTACAGTAGCGCGATGGAGGAGGTTGTAAAGCCCTTCTTTTATGC
GCCTTTCCTGGGGGCGGAGACGGAGATGAGGAAAAAGTGGGAGGGCGAGA
AGGAGGGAGGAAGGAATAAGAAGGGCCTGCGAGGAAATGGTCAAGAGAAG
TCGTAGTGTTTGAGGGAGAAAAAGGGATGAGAGGGTGGATGGTGAGGGCC
AGTGTCTGCATCTGTTGTTTAAAAACAAATTGACAGAGAATAATCAAAAC
ACCTCATCGGTCTGAAAGGAGTGTATCGTGACTAGGACTAGATAAGGGAG
GACAGGAAAGGAGAGGAAATGAAATCTCAAAAGAGGAGAAACAGCGAAAA
GTGTCAGATGTCTGCGATGATGCGGGGAATGGTATTAATTTTTTGCAGCA
GATTTCCAATAAGCTTGCAAAACAAGAAGGGGGAAAAGAGAAAGAATAAG
AGTGAGTGGATGGCATGATGTAATGTAACTTCCTCCTTCTCCCGAATTGG
ATAAAGAGAAATTATATGTACATGGCTGCTGGGCTGGGAGTCAGACGAAG
CGAACATGTTTGGATATAAATACGCGGTGTTATGTGCTTGAGAAGGCAAG
GATGCCAAGAAGTACACGTTTGAGATTTGAAAGGAGAAATTGTGATATAA
TTTGGAGCAAGAGGAAGAAGAAAAGGTGTTCGCTGGCAAAATAGATGGAA
AGCGTTCCCTCCTGCGCCATTTTCATTT

Coding sequence (CDS) from alignment at scaffold_9:930984..933411+

>mRNA_4896 ID=mRNA_4896|Name=jgi.p|Nanoce1779_2|588289|organism=Nannochloropsis oceanica|type=CDS|length=3318bp|location=Sequence derived from alignment at scaffold_9:930984..933411+ (Nannochloropsis oceanica)
ATGGGTTCTAGTCTAAAGGAGCAAGAGCAGACTGCCACCAAAGTCTTTGC
GTTGGGATTCTGGTCTTCTTTCCTTGCTCCTCGTTCGTCCACGGCGCCAT
CATCCACCTCCCGCCCTGCTGCCTCCTCGTCTTCACCGCCCTCATCCTCA
TCGACATCATCCAAGCGTCGCAAGAATAACTACACCATTTCCGCCCCCAC
CATCACTAGCACCAATACCATAGCCACCCTCTTCCTCTACCTCCTCCTCG
CCCTCCTCCCCTCCCTCGCTCCTGCCCTCCACTTCGGGGACGTCCGTTAC
TTTTCGCATGACGCCACCAAGACCTTGCATCACAATTTATCCACGCTTCT
TGAAAAGGGAGATATTAATGGTGCGTACATCATGGGTAGCAAAGACGGGG
AGATCGTCTTACAAGAATCGGTCGGGTATAAACATCAGGGCCCTCACCCG
TTGTTCCGCCTCTTTTCTATGACCAAGCCCGTGACGGCTGTTCTGGCCTT
GCAGCTAGTGGAAGAGGGAAAGATGGGATTAGATGACGAAATTGCCGAGT
ATTTACCAGAGCTTGCTCACTTGAGAGTGTACGATGGTCTGTCGGTATTG
ATGGAGGAGGGCATGACTGGGCTGGCATCGTTGCTTGGTAGAAACAGCAG
CAGCAGCAACAGCAGCAGCAGCAGTAATAGCAGTAGCAATAAACCCCAGC
ACCACCATCATCGACAGAACTTCCTGTCTCACCCCGCCACCAAAAACGCG
ACCATTCGGGAGCTCCTCACGCACACCGCGGGGTTTGCCTACGGCGATAA
CATCAGCCACCCGATCGACCAAGCCTACGACGAGGCCATGCTCGTGGATT
TCTACGATCACAGTGAATTCGATTTCTTGCAGGAGTTGGCCAGCATTCCC
TTGCTATCCGAGCCAGGAACGGAGTTTCATTATTCGCTTGGCTTTGATGT
GCTAGGGGTGCTGGTGAGCAGGGTGGGAGGGAAGCCTTTGGATGTGTTGA
TGAAGGAGAGGGTTTTCGAGCCGTTAGGGATGAAGGAGACAGGATTCAGC
ATTCCCATGAACAAGATGTGGAGGATGGCGCGCATGAAAATACAAGGGGA
CCTTGGGACGGGCTTTGTGGGAGACTTGGCGGGACTAAGGGCAATGGAGG
AGCCGTCATTCAAGAGTGGAGGAGGTGGTTTGATAAGCACAGCGCAGGAT
TATCTGAAACTAGCGCACATGCTGCTGAATGGAGGAAGGAACGCGAGTGG
GATGCAGGTATTGGGGGAGGAGAGTGTGCGGGCTATGACGACCAACCAGC
TGTTGCCGGCACAGTTGCCGTATCACATGACGAGCTTTCCTGATTATGAG
GGCAGTGGGTTCGGATATGGGGTGATGGTGATAGGCGAGGAGGAGGTGAG
CTTGTCGAGCCCGCAGGGAGAGGTGAGCTGGGCGGGGATGGCGAGTAATA
GTTGGTGGATCTCGCCGAGCCACGGTACGGCCTTGGTGGCGATGACGCAG
CATTTGCCGTACAGTAGCGCGATGGAGGAGGTTGTAAAGCCCTTCTTTTA
TGCGCCTTTCCTGGGGGCGGAGACGGAGATGAGGAAAAAGTGGGAGGGCG
AGAAGGAGGGAGGAAGGAATAAGAAGGGCCTGCGAGGAAATGGTCAAGAG
AAGTCGTAGATGGGTTCTAGTCTAAAGGAGCAAGAGCAGACTGCCACCAA
AGTCTTTGCGTTGGGATTCTGGTCTTCTTTCCTTGCTCCTCGTTCGTCCA
CGGCGCCATCATCCACCTCCCGCCCTGCTGCCTCCTCGTCTTCACCGCCC
TCATCCTCATCGACATCATCCAAGCGTCGCAAGAATAACTACACCATTTC
CGCCCCCACCATCACTAGCACCAATACCATAGCCACCCTCTTCCTCTACC
TCCTCCTCGCCCTCCTCCCCTCCCTCGCTCCTGCCCTCCACTTCGGGGAC
GTCCGTTACTTTTCGCATGACGCCACCAAGACCTTGCATCACAATTTATC
CACGCTTCTTGAAAAGGGAGATATTAATGGTGCGTACATCATGGGTAGCA
AAGACGGGGAGATCGTCTTACAAGAATCGGTCGGGTATAAACATCAGGGC
CCTCACCCGTTGTTCCGCCTCTTTTCTATGACCAAGCCCGTGACGGCTGT
TCTGGCCTTGCAGCTAGTGGAAGAGGGAAAGATGGGATTAGATGACGAAA
TTGCCGAGTATTTACCAGAGCTTGCTCACTTGAGAGTGTACGATGGTCTG
TCGGTATTGATGGAGGAGGGCATGACTGGGCTGGCATCGTTGCTTGGTAG
AAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGTAATAGCAGTAGCAATA
AACCCCAGCACCACCATCATCGACAGAACTTCCTGTCTCACCCCGCCACC
AAAAACGCGACCATTCGGGAGCTCCTCACGCACACCGCGGGGTTTGCCTA
CGGCGATAACATCAGCCACCCGATCGACCAAGCCTACGACGAGGCCATGC
TCGTGGATTTCTACGATCACAGTGAATTCGATTTCTTGCAGGAGTTGGCC
AGCATTCCCTTGCTATCCGAGCCAGGAACGGAGTTTCATTATTCGCTTGG
CTTTGATGTGCTAGGGGTGCTGGTGAGCAGGGTGGGAGGGAAGCCTTTGG
ATGTGTTGATGAAGGAGAGGGTTTTCGAGCCGTTAGGGATGAAGGAGACA
GGATTCAGCATTCCCATGAACAAGATGTGGAGGATGGCGCGCATGAAAAT
ACAAGGGGACCTTGGGACGGGCTTTGTGGGAGACTTGGCGGGACTAAGGG
CAATGGAGGAGCCGTCATTCAAGAGTGGAGGAGGTGGTTTGATAAGCACA
GCGCAGGATTATCTGAAACTAGCGCACATGCTGCTGAATGGAGGAAGGAA
CGCGAGTGGGATGCAGGTATTGGGGGAGGAGAGTGTGCGGGCTATGACGA
CCAACCAGCTGTTGCCGGCACAGTTGCCGTATCACATGACGAGCTTTCCT
GATTATGAGGGCAGTGGGTTCGGATATGGGGTGATGGTGATAGGCGAGGA
GGAGGTGAGCTTGTCGAGCCCGCAGGGAGAGGTGAGCTGGGCGGGGATGG
CGAGTAATAGTTGGTGGATCTCGCCGAGCCACGGTACGGCCTTGGTGGCG
ATGACGCAGCATTTGCCGTACAGTAGCGCGATGGAGGAGGTTGTAAAGCC
CTTCTTTTATGCGCCTTTCCTGGGGGCGGAGACGGAGATGAGGAAAAAGT
GGGAGGGCGAGAAGGAGGGAGGAAGGAATAAGAAGGGCCTGCGAGGAAAT
GGTCAAGAGAAGTCGTAG

Synonyms

Publications