jgi.p|Nanoce1779_2|588286, mRNA_4895 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588286
Unique NamemRNA_4895
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1299
Alignment locationscaffold_9:929023..930566 -

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Properties
Property NameValue
TranscriptId588372
TrackFilteredModels2
ProteinId588286
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:929023..930566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588286gene_4895Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588286mRNA_4895-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4895CDS_4895Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4895 ID=mRNA_4895|Name=jgi.p|Nanoce1779_2|588286|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
CAGTTCTATCCAGCTCTGTCTGGGCAATGGTAAACGCCACTTCAGTGGTC
TTCTTGTCTTGCATCACGTGCGTCATGATGGCCAGCTCATCCCTTGCATT
TGCGGCACCTGCCACCACTGTCCAGAGCAAGGTCCGTCTCTGGAACAGCG
GCACCTGTCCATACGCTCAGCGCGCCTGGCTGGCCCTTCTTGAAAAAGAA
GTTCAATTTGAACACAAAATTGTAGACTTGCAGAACAAACCGGAAGATTT
CATTGCACTCTATGCCTCCCTCCATCCCGACCCGACCGCCCGCGCCAAGG
TGCCTATATTCGAGCACTGCACCGAAAACTCCGCTTCCTCATCCTCTTCA
TATGACGTACAAATTATTGAATCAAATGTATGTGCCGAATATATCGCCGA
GGCATTCCCCAACAGTCAAGGATCCCCCCTCCTTCCTTCTTGCGCTCGCG
ACAAGGCGGTCATGCGTCTCCTGGGTGAGATGTGGACACACTCAGGCATG
GGCAATTATTTTCCCCTCCTTCTCGCAGGGCAGGCAGGTAAGGAAGGTGA
GGGGGCACGTGCAGTAGAGCTTGATAAGATGAAGAAGGGGATGAAGATTA
TGGATACCTTCTTGCGTCAGTATGGCTGTGACGTGGCAGAAAGCCCGTTT
TTATTGAAGAGTGGGTTTTGTTTGGGCGAAGTGTGTCTCGCGCCGTTTGT
TCAGCGCTTGTTGATTGTCGTGCCGCATTGGGCCGGAGTGGACTTATTGG
AGATGGCGGATAAGGAGGGATGGGGGAGATTGAAGGTGTGGATGGAGGCC
GTGGCATGGAGGGAGTCGACGGTTAAGTCTGGGGGGACGAAGGAGGAGAC
AATCAAGAACTATACGAGATTGCTGGCGATGATGAAGGGGGCTGGGGCGA
ATGAAGCGACGAAGTGAGAGAAGAAGGGAGAGCATGAGAGAAAGGGAAAG
AAGCCAGCGAGCAAGAACTTCCATTGATGGTTTCTCGACTACTTGTTACT
CGAAGTGATTGCCACCGGTTTTAAGCTCGGTCTTTAATTTGCCTGAGCCT
CCTCGTGTGCCTCCCTCTCCTCCTTACCTCTCACAATAGCTTTATTTGCT
TTAGATTGACTGCATACGAAAATTAGAGTTATTTTTCCTCTATCATCCTC
TCCCCCTTCCATCTCGTTCTCGTTAGTAGGCGTGTCAGAGGGCGCCGGGT
CGGTTTTGTCGCTCATAAAGAAGTCTCTGTACCGAGTCAAATTGTGGGGA
TGCAAGCCCAATAGAGGAGTACGGGGGTGCAAGTGCAATAGGCAGAAAG
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protein sequence of jgi.p|Nanoce1779_2|588286

>mRNA_4895-protein ID=mRNA_4895-protein|Name=jgi.p|Nanoce1779_2|588286|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MVNATSVVFLSCITCVMMASSSLAFAAPATTVQSKVRLWNSGTCPYAQRA
WLALLEKEVQFEHKIVDLQNKPEDFIALYASLHPDPTARAKVPIFEHCTE
NSASSSSSYDVQIIESNVCAEYIAEAFPNSQGSPLLPSCARDKAVMRLLG
EMWTHSGMGNYFPLLLAGQAGKEGEGARAVELDKMKKGMKIMDTFLRQYG
CDVAESPFLLKSGFCLGEVCLAPFVQRLLIVVPHWAGVDLLEMADKEGWG
RLKVWMEAVAWRESTVKSGGTKEETIKNYTRLLAMMKGAGANEATK*
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mRNA from alignment at scaffold_9:929023..930566-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4895 ID=mRNA_4895|Name=jgi.p|Nanoce1779_2|588286|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp|location=Sequence derived from alignment at scaffold_9:929023..930566- (Nannochloropsis oceanica)
CAGTTCTATCCAGCTCTGTCTGGGCAATGGTAAACGCCACTTCAGTGGTC
TTCTTGTCTTGCATCACGTGCGTCATGATGGCCAGCTCATCCCTTGCATT
TGCGGCACCTGCCACCACTGTCCAGAGCAAGGTATGTGTTTGAATTGAAA
TGTGTGTGTGTGTCATGAAGATATATTTAGCACCTTGTGATGCGTGTTGT
CGATGCGTCGCACCTTCCTTCCATGCTTTCTTCTATTCTTTCTCCTTCAA
TGCTTCATTTTCACTTCCGCGGTCGAAAGGATTTTCAAAGCGGCCATGTA
GAAATTGAACCCTGCACGGTATCCAATCTAGTCCTTCCTTGTTTCCGCCC
CTTACAAAAATCACCATTACTCCTAGGTCCGTCTCTGGAACAGCGGCACC
TGTCCATACGCTCAGCGCGCCTGGCTGGCCCTTCTTGAAAAAGAAGTTCA
ATTTGAACACAAAATTGTAGACTTGCAGAACAAACCGGAAGATTTCATTG
CACTCTATGCCTCCCTCCATCCCGACCCGACCGCCCGCGCCAAGGTGCCT
ATATTCGAGCACTGCACCGAAAACTCCGCTTCCTCATCCTCTTCATATGA
CGTACAAATTATTGAATCAAATGTATGTGCCGAATATATCGCCGAGGCAT
TCCCCAACAGTCAAGGATCCCCCCTCCTTCCTTCTTGCGCTCGCGACAAG
GCGGTCATGCGTCTCCTGGGTGAGATGTGGACACACTCAGGCATGGGCAA
TTATTTTCCCCTCCTTCTCGCAGGGCAGGCAGGTAAGGAAGGTGAGGGGG
CACGTGCAGTAGAGCTTGATAAGATGAAGAAGGGGATGAAGATTATGGAT
ACCTTCTTGCGTCAGTATGGCTGTGACGTGGCAGAAAGCCCGTTTTTATT
GAAGAGTGGGTTTTGTTTGGGCGAAGTGTGTCTCGCGCCGTTTGTTCAGC
GCTTGTTGATTGTCGTGCCGCATTGGGCCGGAGTGGACTTATTGGAGATG
GCGGATAAGGAGGGATGGGGGAGATTGAAGGTGTGGATGGAGGCCGTGGC
ATGGAGGGAGTCGACGGTTAAGTCTGGGGGGACGAAGGAGGAGACAATCA
AGAACTATACGAGATTGCTGGCGATGATGAAGGGGGCTGGGGCGAATGAA
GCGACGAAGTGAGAGAAGAAGGGAGAGCATGAGAGAAAGGGAAAGAAGCC
AGCGAGCAAGAACTTCCATTGATGGTTTCTCGACTACTTGTTACTCGAAG
TGATTGCCACCGGTTTTAAGCTCGGTCTTTAATTTGCCTGAGCCTCCTCG
TGTGCCTCCCTCTCCTCCTTACCTCTCACAATAGCTTTATTTGCTTTAGA
TTGACTGCATACGAAAATTAGAGTTATTTTTCCTCTATCATCCTCTCCCC
CTTCCATCTCGTTCTCGTTAGTAGGCGTGTCAGAGGGCGCCGGGTCGGTT
TTGTCGCTCATAAAGAAGTCTCTGTACCGAGTCAAATTGTGGGGATGCAA
GCCCAATAGAGGAGTACGGGGGTGCAAGTGCAATAGGCAGAAAG
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Coding sequence (CDS) from alignment at scaffold_9:929023..930566-

>mRNA_4895 ID=mRNA_4895|Name=jgi.p|Nanoce1779_2|588286|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_9:929023..930566- (Nannochloropsis oceanica)
GTCCGTCTCTGGAACAGCGGCACCTGTCCATACGCTCAGCGCGCCTGGCT
GGCCCTTCTTGAAAAAGAAGTTCAATTTGAACACAAAATTGTAGACTTGC
AGAACAAACCGGAAGATTTCATTGCACTCTATGCCTCCCTCCATCCCGAC
CCGACCGCCCGCGCCAAGGTGCCTATATTCGAGCACTGCACCGAAAACTC
CGCTTCCTCATCCTCTTCATATGACGTACAAATTATTGAATCAAATGTAT
GTGCCGAATATATCGCCGAGGCATTCCCCAACAGTCAAGGATCCCCCCTC
CTTCCTTCTTGCGCTCGCGACAAGGCGGTCATGCGTCTCCTGGGTGAGAT
GTGGACACACTCAGGCATGGGCAATTATTTTCCCCTCCTTCTCGCAGGGC
AGGCAGGTAAGGAAGGTGAGGGGGCACGTGCAGTAGAGCTTGATAAGATG
AAGAAGGGGATGAAGATTATGGATACCTTCTTGCGTCAGTATGGCTGTGA
CGTGGCAGAAAGCCCGTTTTTATTGAAGAGTGGGTTTTGTTTGGGCGAAG
TGTGTCTCGCGCCGTTTGTTCAGCGCTTGTTGATTGTCGTGCCGCATTGG
GCCGGAGTGGACTTATTGGAGATGGCGGATAAGGAGGGATGGGGGAGATT
GAAGGTGTGGATGGAGGCCGTGGCATGGAGGGAGTCGACGGTTAAGTCTG
GGGGGACGAAGGAGGAGACAATCAAGAACTATACGAGATTGCTGGCGATG
ATGAAGGGGGCTGGGGCGAATGAAGCGACGAAGTGAATGGTAAACGCCAC
TTCAGTGGTCTTCTTGTCTTGCATCACGTGCGTCATGATGGCCAGCTCAT
CCCTTGCATTTGCGGCACCTGCCACCACTGTCCAGAGCAAGGTCCGTCTC
TGGAACAGCGGCACCTGTCCATACGCTCAGCGCGCCTGGCTGGCCCTTCT
TGAAAAAGAAGTTCAATTTGAACACAAAATTGTAGACTTGCAGAACAAAC
CGGAAGATTTCATTGCACTCTATGCCTCCCTCCATCCCGACCCGACCGCC
CGCGCCAAGGTGCCTATATTCGAGCACTGCACCGAAAACTCCGCTTCCTC
ATCCTCTTCATATGACGTACAAATTATTGAATCAAATGTATGTGCCGAAT
ATATCGCCGAGGCATTCCCCAACAGTCAAGGATCCCCCCTCCTTCCTTCT
TGCGCTCGCGACAAGGCGGTCATGCGTCTCCTGGGTGAGATGTGGACACA
CTCAGGCATGGGCAATTATTTTCCCCTCCTTCTCGCAGGGCAGGCAGGTA
AGGAAGGTGAGGGGGCACGTGCAGTAGAGCTTGATAAGATGAAGAAGGGG
ATGAAGATTATGGATACCTTCTTGCGTCAGTATGGCTGTGACGTGGCAGA
AAGCCCGTTTTTATTGAAGAGTGGGTTTTGTTTGGGCGAAGTGTGTCTCG
CGCCGTTTGTTCAGCGCTTGTTGATTGTCGTGCCGCATTGGGCCGGAGTG
GACTTATTGGAGATGGCGGATAAGGAGGGATGGGGGAGATTGAAGGTGTG
GATGGAGGCCGTGGCATGGAGGGAGTCGACGGTTAAGTCTGGGGGGACGA
AGGAGGAGACAATCAAGAACTATACGAGATTGCTGGCGATGATGAAGGGG
GCTGGGGCGAATGAAGCGACGAAGTGAATGGTAAACGCCACTTCAGTGGT
CTTCTTGTCTTGCATCACGTGCGTCATGATGGCCAGCTCATCCCTTGCAT
TTGCGGCACCTGCCACCACTGTCCAGAGCAAG
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Synonyms
Publications