jgi.p|Nanoce1779_2|588285, mRNA_4894 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588285
Unique NamemRNA_4894
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length825
Alignment locationscaffold_9:927581..928976 +

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Properties
Property NameValue
TranscriptId588371
TrackFilteredModels2
ProteinId588285
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:927581..928976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588285gene_4894Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588285mRNA_4894-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4894CDS_4894Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4894 ID=mRNA_4894|Name=jgi.p|Nanoce1779_2|588285|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
CAGGCCATAGAAAGCGCATCTACGGTAGCCATGACATCATCCTCGTCATC
CACGCCTGCCGCGAATAGCAGCGCAGCCAGTCCAGCAAACGAGGAGGAGT
CGCAAGAGGAATACGAGGTCTTCGTCATGAAGCAAGACTTCAAGTTCCAC
TGTGCGCATTTCGTAGCATTCAAGGGTTATAGAGAAAGATTGCACGGCCA
TAATTACACCGTGGGCGTGCGGATGCGCGGGGCTGGGCGAGGGCACGATG
GCTATCTCATTGACTTCGGTGACATCAAGCGCGTAACCCGCTCCCTCTGT
AAGGAGCTCAACGAACGCTTTATCTGCCCGACCCGGAGCGACGTGATTCA
AATCGAGAGTGACGAGACCTCGACTTCACTTCTGTGTGAGGACGGGGCTA
GGTTTGTCTTTCCAACGGGCGATTGCGCCATGCTCCCGGTAGTGCACAGC
ACCGCCGAGGAGCTCGCGCAGTACCTGTGGCATCGCCTGACCACCACCTT
TAGCTTGGAGGGGTTGCTGGCCCGGGGCATCCATACTTTGCAGATCATCG
TCGCCGAGGCCCCTCGGCAAGAAGGCTCCTACACGCGGAAGCTGACCTCG
CCCCCACCGTTGTGCTTCGAGGAGGATAAGGAGAGAGGGCGGGTGTCGAG
ACCGAGGCCGTGTATACACGCAGTCGAAGAGGATGGAAAGGATATAGATG
GGGAGGACTTGGACATGTAGGTAAGAAAATAAAGAGACGAAGAGAAAAAT
ACCTGTCTAGGGATGACTAAAATGATTACGACAAAATGATGTGAAATGAA
TAAATATACTTAGATGGCATCACGG
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protein sequence of jgi.p|Nanoce1779_2|588285

>mRNA_4894-protein ID=mRNA_4894-protein|Name=jgi.p|Nanoce1779_2|588285|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MTSSSSSTPAANSSAASPANEEESQEEYEVFVMKQDFKFHCAHFVAFKGY
RERLHGHNYTVGVRMRGAGRGHDGYLIDFGDIKRVTRSLCKELNERFICP
TRSDVIQIESDETSTSLLCEDGARFVFPTGDCAMLPVVHSTAEELAQYLW
HRLTTTFSLEGLLARGIHTLQIIVAEAPRQEGSYTRKLTSPPPLCFEEDK
ERGRVSRPRPCIHAVEEDGKDIDGEDLDM*
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mRNA from alignment at scaffold_9:927581..928976+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4894 ID=mRNA_4894|Name=jgi.p|Nanoce1779_2|588285|organism=Nannochloropsis oceanica|type=mRNA|length=1396bp|location=Sequence derived from alignment at scaffold_9:927581..928976+ (Nannochloropsis oceanica)
CAGGCCATAGAAAGCGCATCTACGGTAGCCATGACATCATCCTCGTCATC
CACGCCTGCCGCGAATAGCAGCGCAGCCAGTCCAGCAAACGAGGAGGAGT
CGCAAGAGGAATACGAGGTAACAATCACACTCGCCTCCCCTACCTGACCC
TTTGATCCAAAGCCATCCTTACTGTGCCTGCTGCATTGACACTTCAGTGA
CGCCTTCGAAGTTCTCCATCGTAACTGGTTCCCCTCTCCTCCTTGTCTGT
GTTTTGGTCCTGTCTCTCATTCCCTCCCTCCTCTCTTCCCCTCCCTCCCC
TGCTCACCACACTCCCACCCAAAGGTCTTCGTCATGAAGCAAGACTTCAA
GTTCCACTGTGCGCATTTCGTAGCATTCAAGGGTTATAGAGAAAGATTGC
ACGGCCATAATTACACCGTGGGCGTGCGGATGCGCGGGGCTGGGCGAGGG
CACGATGGGTAAGGTGGTTGTGGGGATGGGGTGGCGAGCAGACAAGAGTA
AGGAGAGTAAGGAGATACGCGCACCAACATGCCAAGTGGCGGTAAGGACT
ACCTGTTTGTAGAAACGCCTCAATTGCTTTTCGTCCTCTCTCGCGCTCCC
CTCCCCCGGACTCAACCTCCTTCCCTCCCTACCTCCCTCCCTTCCTTCCT
CCTTTCCTTCCCCCACCCAAAGCTATCTCATTGACTTCGGTGACATCAAG
CGCGTAACCCGCTCCCTCTGTAAGGAGCTCAACGAACGCTTTATCTGCCC
GACCCGGAGCGACGTGATTCAAATCGAGAGTGACGAGACCTCGACTTCAC
TTCTGTGTGAGGACGGGGCTAGGTTTGTCTTTCCAACGGGCGATTGCGCC
ATGCTCCCGGTAGTGCACAGGTGAGCGAAGAGGACAAAGGGAGGAGTACG
TCCTGGCACCATCCTGAAATTAGAAAAATTTAAATTAAATGGAATATGGA
GGATATAACATTTTCACATCGGCTATCCATCGATATGCCCTCTCATTCCC
GCGGCTACCCCCACCCACAGCACCGCCGAGGAGCTCGCGCAGTACCTGTG
GCATCGCCTGACCACCACCTTTAGCTTGGAGGGGTTGCTGGCCCGGGGCA
TCCATACTTTGCAGATCATCGTCGCCGAGGCCCCTCGGCAAGAAGGCTCC
TACACGCGGAAGCTGACCTCGCCCCCACCGTTGTGCTTCGAGGAGGATAA
GGAGAGAGGGCGGGTGTCGAGACCGAGGCCGTGTATACACGCAGTCGAAG
AGGATGGAAAGGATATAGATGGGGAGGACTTGGACATGTAGGTAAGAAAA
TAAAGAGACGAAGAGAAAAATACCTGTCTAGGGATGACTAAAATGATTAC
GACAAAATGATGTGAAATGAATAAATATACTTAGATGGCATCACGG
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Coding sequence (CDS) from alignment at scaffold_9:927581..928976+

>mRNA_4894 ID=mRNA_4894|Name=jgi.p|Nanoce1779_2|588285|organism=Nannochloropsis oceanica|type=CDS|length=2760bp|location=Sequence derived from alignment at scaffold_9:927581..928976+ (Nannochloropsis oceanica)
ATGACATCATCCTCGTCATCCACGCCTGCCGCGAATAGCAGCGCAGCCAG
TCCAGCAAACGAGGAGGAGTCGCAAGAGGAATACGAGGTCTTCGTCATGA
AGCAAGACTTCAAGTTCCACTGTGCGCATTTCGTAGCATTCAAGGGTTAT
AGAGAAAGATTGCACGGCCATAATTACACCGTGGGCGTGCGGATGCGCGG
GGCTGGGCGAGGGCACGATGGCTATCTCATTGACTTCGGTGACATCAAGC
GCGTAACCCGCTCCCTCTGTAAGGAGCTCAACGAACGCTTTATCTGCCCG
ACCCGGAGCGACGTGATTCAAATCGAGAGTGACGAGACCTCGACTTCACT
TCTGTGTGAGGACGGGGCTAGGTTTGTCTTTCCAACGGGCGATTGCGCCA
TGCTCCCGGTAGTGCACAGCACCGCCGAGGAGCTCGCGCAGTACCTGTGG
CATCGCCTGACCACCACCTTTAGCTTGGAGGGGTTGCTGGCCCGGGGCAT
CCATACTTTGCAGATCATCGTCGCCGAGGCCCCTCGGCAAGAAGGCTCCT
ACACGCGGAAGCTGACCTCGCCCCCACCGTTGTGCTTCGAGGAGGATAAG
GAGAGAGGGCGGGTGTCGAGACCGAGGCCGTGTATACACGCAGTCGAAGA
GGATGGAAAGGATATAGATGGGGAGGACTTGGACATGTAGATGACATCAT
CCTCGTCATCCACGCCTGCCGCGAATAGCAGCGCAGCCAGTCCAGCAAAC
GAGGAGGAGTCGCAAGAGGAATACGAGGTCTTCGTCATGAAGCAAGACTT
CAAGTTCCACTGTGCGCATTTCGTAGCATTCAAGGGTTATAGAGAAAGAT
TGCACGGCCATAATTACACCGTGGGCGTGCGGATGCGCGGGGCTGGGCGA
GGGCACGATGGCTATCTCATTGACTTCGGTGACATCAAGCGCGTAACCCG
CTCCCTCTGTAAGGAGCTCAACGAACGCTTTATCTGCCCGACCCGGAGCG
ACGTGATTCAAATCGAGAGTGACGAGACCTCGACTTCACTTCTGTGTGAG
GACGGGGCTAGGTTTGTCTTTCCAACGGGCGATTGCGCCATGCTCCCGGT
AGTGCACAGCACCGCCGAGGAGCTCGCGCAGTACCTGTGGCATCGCCTGA
CCACCACCTTTAGCTTGGAGGGGTTGCTGGCCCGGGGCATCCATACTTTG
CAGATCATCGTCGCCGAGGCCCCTCGGCAAGAAGGCTCCTACACGCGGAA
GCTGACCTCGCCCCCACCGTTGTGCTTCGAGGAGGATAAGGAGAGAGGGC
GGGTGTCGAGACCGAGGCCGTGTATACACGCAGTCGAAGAGGATGGAAAG
GATATAGATGGGGAGGACTTGGACATGTAGATGACATCATCCTCGTCATC
CACGCCTGCCGCGAATAGCAGCGCAGCCAGTCCAGCAAACGAGGAGGAGT
CGCAAGAGGAATACGAGGTCTTCGTCATGAAGCAAGACTTCAAGTTCCAC
TGTGCGCATTTCGTAGCATTCAAGGGTTATAGAGAAAGATTGCACGGCCA
TAATTACACCGTGGGCGTGCGGATGCGCGGGGCTGGGCGAGGGCACGATG
GCTATCTCATTGACTTCGGTGACATCAAGCGCGTAACCCGCTCCCTCTGT
AAGGAGCTCAACGAACGCTTTATCTGCCCGACCCGGAGCGACGTGATTCA
AATCGAGAGTGACGAGACCTCGACTTCACTTCTGTGTGAGGACGGGGCTA
GGTTTGTCTTTCCAACGGGCGATTGCGCCATGCTCCCGGTAGTGCACAGC
ACCGCCGAGGAGCTCGCGCAGTACCTGTGGCATCGCCTGACCACCACCTT
TAGCTTGGAGGGGTTGCTGGCCCGGGGCATCCATACTTTGCAGATCATCG
TCGCCGAGGCCCCTCGGCAAGAAGGCTCCTACACGCGGAAGCTGACCTCG
CCCCCACCGTTGTGCTTCGAGGAGGATAAGGAGAGAGGGCGGGTGTCGAG
ACCGAGGCCGTGTATACACGCAGTCGAAGAGGATGGAAAGGATATAGATG
GGGAGGACTTGGACATGTAGATGACATCATCCTCGTCATCCACGCCTGCC
GCGAATAGCAGCGCAGCCAGTCCAGCAAACGAGGAGGAGTCGCAAGAGGA
ATACGAGGTCTTCGTCATGAAGCAAGACTTCAAGTTCCACTGTGCGCATT
TCGTAGCATTCAAGGGTTATAGAGAAAGATTGCACGGCCATAATTACACC
GTGGGCGTGCGGATGCGCGGGGCTGGGCGAGGGCACGATGGCTATCTCAT
TGACTTCGGTGACATCAAGCGCGTAACCCGCTCCCTCTGTAAGGAGCTCA
ACGAACGCTTTATCTGCCCGACCCGGAGCGACGTGATTCAAATCGAGAGT
GACGAGACCTCGACTTCACTTCTGTGTGAGGACGGGGCTAGGTTTGTCTT
TCCAACGGGCGATTGCGCCATGCTCCCGGTAGTGCACAGCACCGCCGAGG
AGCTCGCGCAGTACCTGTGGCATCGCCTGACCACCACCTTTAGCTTGGAG
GGGTTGCTGGCCCGGGGCATCCATACTTTGCAGATCATCGTCGCCGAGGC
CCCTCGGCAAGAAGGCTCCTACACGCGGAAGCTGACCTCGCCCCCACCGT
TGTGCTTCGAGGAGGATAAGGAGAGAGGGCGGGTGTCGAGACCGAGGCCG
TGTATACACGCAGTCGAAGAGGATGGAAAGGATATAGATGGGGAGGACTT
GGACATGTAG
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Synonyms
Publications