jgi.p|Nanoce1779_2|670607, mRNA_4891 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670607
Unique Name	mRNA_4891
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1094
Alignment location	scaffold_9:919353..920912 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670693
Track	FilteredModels2
ProteinId	670607

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:919353..920912 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670607	gene_4891	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670607	mRNA_4891-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4891	CDS_4891	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:919353..920912+
coding sequence from alignment at scaffold_9:919353..920912+

mRNA sequence

>mRNA_4891 ID=mRNA_4891|Name=jgi.p|Nanoce1779_2|670607|organism=Nannochloropsis oceanica|type=mRNA|length=1094bp
ATGCAGAGGCCCGTGACGATCGCAAGCAGCGCCACTCGTCTCCATGCCGC
CGCGTCTGTCGCTCCCGCTGGCTCTGTGGCGGCCTCCTTGGAAGCCTTGC
ACGACGCTACCATGGCCAAACTCACCGACACACTCAAGGTGGAAGCTACG
GATTATCCTGCTTCAATGGAAGTGGAATCCTACTCCGGCAAGAGCGGCGT
CACAGGCAGCGTTGCCGGCTACAAGGGCAACGTCCGTTTAGTCTGGACGG
GAGAGGGGAAGATGATGCGCGAGGAGGGGACACAGGGCGGGGGGATGTTT
CGAAGTGACATTGCAATTTGGGTGGGGCCTTTGACATTGGTTCCTCATTT
GGTAATGTCGCTGGAGCTGGGGGAGGGGGAGGGAGGGAAGGAGGGCGAGG
TGAAGGTGTTGTTGGACTATGTGTCGAGGGAGGATCTACAGTACACAACG
GGGAACAACCACTTGACCGACTACTTCGCGGGACCGGCTCGAGAAGCAAC
AGAAGCAGCCGCCACCGACCCCTTGACCCGCTGTCGGGTCGTGCTTCCGT
CCTTCTACTCCCGCGTCCTCGTCTCTCCCTCCGCTGTGTCTCTCTCCCTC
CCTGCCTCCCCCGCTGGGATAACCAAGGCCGGCGAGTGGATGGAGGCCCA
CGTCTCCCGCTGGTTGGGCTGGTGCGAGAGCGCGAAGGAGGTAGACCGGA
TGAAGAGGGGATTGCTGCTTTCGAGGGACAACGGAGTGCGGCGGACGTGG
GTCGAGGGCACGGCCGGGGGGCTGGAAGTGTTTGTGGGAGGGAGGGAGGG
AGGGAAGGCCTTGGCGAAGCAGGCGGCGATTGCGATGAGTGGCCCGCAGC
AGGAGGCGTACGTGGGAGGGAGGGAGGAGAGGGGGAGAGGCCGATGGTGA
TGAAGAAGCAAAGAACGAGATGAATGGGATATATGAGAATTTGATGGGCA
TGGCCCACCTTGCTCGTTCGAAGAGGAGGGAGGGACGGAGAAAGAGAGGG
AGGGAAGAGGAAAGAAGGGTAGAGAGCAGAGCAGCAAGGGGAGTGAGAGA
GAGACCTTGACAGCAGTTCCACCTCCTCTTCCTCCTCCTCGACT

protein sequence of jgi.p|Nanoce1779_2|670607

>mRNA_4891-protein ID=mRNA_4891-protein|Name=jgi.p|Nanoce1779_2|670607|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MQRPVTIASSATRLHAAASVAPAGSVAASLEALHDATMAKLTDTLKVEAT
DYPASMEVESYSGKSGVTGSVAGYKGNVRLVWTGEGKMMREEGTQGGGMF
RSDIAIWVGPLTLVPHLVMSLELGEGEGGKEGEVKVLLDYVSREDLQYTT
GNNHLTDYFAGPAREATEAAATDPLTRCRVVLPSFYSRVLVSPSAVSLSL
PASPAGITKAGEWMEAHVSRWLGWCESAKEVDRMKRGLLLSRDNGVRRTW
VEGTAGGLEVFVGGREGGKALAKQAAIAMSGPQQEAYVGGREERGRGRW*

mRNA from alignment at scaffold_9:919353..920912+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4891 ID=mRNA_4891|Name=jgi.p|Nanoce1779_2|670607|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp|location=Sequence derived from alignment at scaffold_9:919353..920912+ (Nannochloropsis oceanica)
ATGCAGAGGCCCGTGACGATCGCAAGCAGGTCGAGAGCGTTTTCCCTGGT
GGCCTGCTGCACGTTGATAACAACCACAGCTTTTGTCGTGCCCTCCATTT
CGTATAGTCGTGCTTGCCCCAGCGCCACTCGTCTCCATGCCGCCGCGTCT
GTCGCTCCCGCTGGCTCTGTGGCGGCCTCCTTGGAAGCCTTGCACGACGC
TACCATGGCCAAACTCACCGACACACTCAAGGTTTGTAATTGATGGCGCA
GTTATTTACCGTTTGTCTCATGACCCTGTTAATCTATATTCTATCTCACT
CTCTTGCAAATGCCCTGCTTTTTTTCTATTTTGCTTTGTGATTTCCCTGC
TTTTCCTCTCCTCTCCCACTCACCTGCTTGAAACAGGTGGAAGCTACGGA
TTATCCTGCTTCAATGGAAGTGGAATCCTACTCCGGCAAGAGCGGCGTCA
CAGGCAGCGTTGCCGGCTACAAGGGCAACGTCCGTTTAGTCTGGACGGGA
GAGGGGAAGATGATGCGCGAGGAGGGGACACAGGGCGGGGGGATGTTTCG
AAGTGACATTGCAATTTGGGTGGGGCCTTTGACATTGGTTCCTCATTTGG
TAATGTCGCTGGAGCTGGGGGAGGGGGAGGGAGGGAAGGAGGGCGAGGTG
AAGGTGTTGTTGGACTATGTGTCGAGGGAGGATCTACAGTACACAACGGG
GAACAACCACTTGACCGACTACTTCGCGGGACCGGCTCGAGAAGTAAGTG
GGCAAGGGAGAAAGGGCGGGAGAGATAGGAGGGAAGAGAGGAAGGGAAGG
AGACATGGACGTAAAAATGTTGAGTACGTATTTCTATCTTGTTGGACAAA
ACAAACCTCTTTCTCCCCTCTCCAACATTTCTTCTTTCCCTTTCCCCTTC
ATCCTCCTGTCCTCATTTCCCCCTCGCTCTTCACAGGCAACAGAAGCAGC
CGCCACCGACCCCTTGACCCGCTGTCGGGTCGTGCTTCCGTCCTTCTACT
CCCGCGTCCTCGTCTCTCCCTCCGCTGTGTCTCTCTCCCTCCCTGCCTCC
CCCGCTGGGATAACCAAGGCCGGCGAGTGGATGGAGGCCCACGTCTCCCG
CTGGTTGGGCTGGTGCGAGAGCGCGAAGGAGGTAGACCGGATGAAGAGGG
GATTGCTGCTTTCGAGGGACAACGGAGTGCGGCGGACGTGGGTCGAGGGC
ACGGCCGGGGGGCTGGAAGTGTTTGTGGGAGGGAGGGAGGGAGGGAAGGC
CTTGGCGAAGCAGGCGGCGATTGCGATGAGTGGCCCGCAGCAGGAGGCGT
ACGTGGGGGGGTTCAGTTGAGGAGGGGGAGGGAGGGAGGGAGGAGAGGGG
GAGAGGCCGATGGTGATGAAGAAGCAAAGAACGAGATGAATGGGATATAT
GAGAATTTGATGGGCATGGCCCACCTTGCTCGTTCGAAGAGGAGGGAGGG
ACGGAGAAAGAGAGGGAGGGAAGAGGAAAGAAGGGTAGAGAGCAGAGCAG
CAAGGGGAGTGAGAGAGAGACCTTGACAGCAGTTCCACCTCCTCTTCCTC
CTCCTCGACT

Coding sequence (CDS) from alignment at scaffold_9:919353..920912+

>mRNA_4891 ID=mRNA_4891|Name=jgi.p|Nanoce1779_2|670607|organism=Nannochloropsis oceanica|type=CDS|length=4500bp|location=Sequence derived from alignment at scaffold_9:919353..920912+ (Nannochloropsis oceanica)
ATGCAGAGGCCCGTGACGATCGCAAGCAGCGCCACTCGTCTCCATGCCGC
CGCGTCTGTCGCTCCCGCTGGCTCTGTGGCGGCCTCCTTGGAAGCCTTGC
ACGACGCTACCATGGCCAAACTCACCGACACACTCAAGGTGGAAGCTACG
GATTATCCTGCTTCAATGGAAGTGGAATCCTACTCCGGCAAGAGCGGCGT
CACAGGCAGCGTTGCCGGCTACAAGGGCAACGTCCGTTTAGTCTGGACGG
GAGAGGGGAAGATGATGCGCGAGGAGGGGACACAGGGCGGGGGGATGTTT
CGAAGTGACATTGCAATTTGGGTGGGGCCTTTGACATTGGTTCCTCATTT
GGTAATGTCGCTGGAGCTGGGGGAGGGGGAGGGAGGGAAGGAGGGCGAGG
TGAAGGTGTTGTTGGACTATGTGTCGAGGGAGGATCTACAGTACACAACG
GGGAACAACCACTTGACCGACTACTTCGCGGGACCGGCTCGAGAAGCAAC
AGAAGCAGCCGCCACCGACCCCTTGACCCGCTGTCGGGTCGTGCTTCCGT
CCTTCTACTCCCGCGTCCTCGTCTCTCCCTCCGCTGTGTCTCTCTCCCTC
CCTGCCTCCCCCGCTGGGATAACCAAGGCCGGCGAGTGGATGGAGGCCCA
CGTCTCCCGCTGGTTGGGCTGGTGCGAGAGCGCGAAGGAGGTAGACCGGA
TGAAGAGGGGATTGCTGCTTTCGAGGGACAACGGAGTGCGGCGGACGTGG
GTCGAGGGCACGGCCGGGGGGCTGGAAGTGTTTGTGGGAGGGAGGGAGGG
AGGGAAGGCCTTGGCGAAGCAGGCGGCGATTGCGATGAGTGGCCCGCAGC
AGGAGGCGTACGTGGGAGGGAGGGAGGAGAGGGGGAGAGGCCGATGGTGA
ATGCAGAGGCCCGTGACGATCGCAAGCAGCGCCACTCGTCTCCATGCCGC
CGCGTCTGTCGCTCCCGCTGGCTCTGTGGCGGCCTCCTTGGAAGCCTTGC
ACGACGCTACCATGGCCAAACTCACCGACACACTCAAGGTGGAAGCTACG
GATTATCCTGCTTCAATGGAAGTGGAATCCTACTCCGGCAAGAGCGGCGT
CACAGGCAGCGTTGCCGGCTACAAGGGCAACGTCCGTTTAGTCTGGACGG
GAGAGGGGAAGATGATGCGCGAGGAGGGGACACAGGGCGGGGGGATGTTT
CGAAGTGACATTGCAATTTGGGTGGGGCCTTTGACATTGGTTCCTCATTT
GGTAATGTCGCTGGAGCTGGGGGAGGGGGAGGGAGGGAAGGAGGGCGAGG
TGAAGGTGTTGTTGGACTATGTGTCGAGGGAGGATCTACAGTACACAACG
GGGAACAACCACTTGACCGACTACTTCGCGGGACCGGCTCGAGAAGCAAC
AGAAGCAGCCGCCACCGACCCCTTGACCCGCTGTCGGGTCGTGCTTCCGT
CCTTCTACTCCCGCGTCCTCGTCTCTCCCTCCGCTGTGTCTCTCTCCCTC
CCTGCCTCCCCCGCTGGGATAACCAAGGCCGGCGAGTGGATGGAGGCCCA
CGTCTCCCGCTGGTTGGGCTGGTGCGAGAGCGCGAAGGAGGTAGACCGGA
TGAAGAGGGGATTGCTGCTTTCGAGGGACAACGGAGTGCGGCGGACGTGG
GTCGAGGGCACGGCCGGGGGGCTGGAAGTGTTTGTGGGAGGGAGGGAGGG
AGGGAAGGCCTTGGCGAAGCAGGCGGCGATTGCGATGAGTGGCCCGCAGC
AGGAGGCGTACGTGGGAGGGAGGGAGGAGAGGGGGAGAGGCCGATGGTGA
ATGCAGAGGCCCGTGACGATCGCAAGCAGCGCCACTCGTCTCCATGCCGC
CGCGTCTGTCGCTCCCGCTGGCTCTGTGGCGGCCTCCTTGGAAGCCTTGC
ACGACGCTACCATGGCCAAACTCACCGACACACTCAAGGTGGAAGCTACG
GATTATCCTGCTTCAATGGAAGTGGAATCCTACTCCGGCAAGAGCGGCGT
CACAGGCAGCGTTGCCGGCTACAAGGGCAACGTCCGTTTAGTCTGGACGG
GAGAGGGGAAGATGATGCGCGAGGAGGGGACACAGGGCGGGGGGATGTTT
CGAAGTGACATTGCAATTTGGGTGGGGCCTTTGACATTGGTTCCTCATTT
GGTAATGTCGCTGGAGCTGGGGGAGGGGGAGGGAGGGAAGGAGGGCGAGG
TGAAGGTGTTGTTGGACTATGTGTCGAGGGAGGATCTACAGTACACAACG
GGGAACAACCACTTGACCGACTACTTCGCGGGACCGGCTCGAGAAGCAAC
AGAAGCAGCCGCCACCGACCCCTTGACCCGCTGTCGGGTCGTGCTTCCGT
CCTTCTACTCCCGCGTCCTCGTCTCTCCCTCCGCTGTGTCTCTCTCCCTC
CCTGCCTCCCCCGCTGGGATAACCAAGGCCGGCGAGTGGATGGAGGCCCA
CGTCTCCCGCTGGTTGGGCTGGTGCGAGAGCGCGAAGGAGGTAGACCGGA
TGAAGAGGGGATTGCTGCTTTCGAGGGACAACGGAGTGCGGCGGACGTGG
GTCGAGGGCACGGCCGGGGGGCTGGAAGTGTTTGTGGGAGGGAGGGAGGG
AGGGAAGGCCTTGGCGAAGCAGGCGGCGATTGCGATGAGTGGCCCGCAGC
AGGAGGCGTACGTGGGAGGGAGGGAGGAGAGGGGGAGAGGCCGATGGTGA
ATGCAGAGGCCCGTGACGATCGCAAGCAGCGCCACTCGTCTCCATGCCGC
CGCGTCTGTCGCTCCCGCTGGCTCTGTGGCGGCCTCCTTGGAAGCCTTGC
ACGACGCTACCATGGCCAAACTCACCGACACACTCAAGGTGGAAGCTACG
GATTATCCTGCTTCAATGGAAGTGGAATCCTACTCCGGCAAGAGCGGCGT
CACAGGCAGCGTTGCCGGCTACAAGGGCAACGTCCGTTTAGTCTGGACGG
GAGAGGGGAAGATGATGCGCGAGGAGGGGACACAGGGCGGGGGGATGTTT
CGAAGTGACATTGCAATTTGGGTGGGGCCTTTGACATTGGTTCCTCATTT
GGTAATGTCGCTGGAGCTGGGGGAGGGGGAGGGAGGGAAGGAGGGCGAGG
TGAAGGTGTTGTTGGACTATGTGTCGAGGGAGGATCTACAGTACACAACG
GGGAACAACCACTTGACCGACTACTTCGCGGGACCGGCTCGAGAAGCAAC
AGAAGCAGCCGCCACCGACCCCTTGACCCGCTGTCGGGTCGTGCTTCCGT
CCTTCTACTCCCGCGTCCTCGTCTCTCCCTCCGCTGTGTCTCTCTCCCTC
CCTGCCTCCCCCGCTGGGATAACCAAGGCCGGCGAGTGGATGGAGGCCCA
CGTCTCCCGCTGGTTGGGCTGGTGCGAGAGCGCGAAGGAGGTAGACCGGA
TGAAGAGGGGATTGCTGCTTTCGAGGGACAACGGAGTGCGGCGGACGTGG
GTCGAGGGCACGGCCGGGGGGCTGGAAGTGTTTGTGGGAGGGAGGGAGGG
AGGGAAGGCCTTGGCGAAGCAGGCGGCGATTGCGATGAGTGGCCCGCAGC
AGGAGGCGTACGTGGGAGGGAGGGAGGAGAGGGGGAGAGGCCGATGGTGA
ATGCAGAGGCCCGTGACGATCGCAAGCAGCGCCACTCGTCTCCATGCCGC
CGCGTCTGTCGCTCCCGCTGGCTCTGTGGCGGCCTCCTTGGAAGCCTTGC
ACGACGCTACCATGGCCAAACTCACCGACACACTCAAGGTGGAAGCTACG
GATTATCCTGCTTCAATGGAAGTGGAATCCTACTCCGGCAAGAGCGGCGT
CACAGGCAGCGTTGCCGGCTACAAGGGCAACGTCCGTTTAGTCTGGACGG
GAGAGGGGAAGATGATGCGCGAGGAGGGGACACAGGGCGGGGGGATGTTT
CGAAGTGACATTGCAATTTGGGTGGGGCCTTTGACATTGGTTCCTCATTT
GGTAATGTCGCTGGAGCTGGGGGAGGGGGAGGGAGGGAAGGAGGGCGAGG
TGAAGGTGTTGTTGGACTATGTGTCGAGGGAGGATCTACAGTACACAACG
GGGAACAACCACTTGACCGACTACTTCGCGGGACCGGCTCGAGAAGCAAC
AGAAGCAGCCGCCACCGACCCCTTGACCCGCTGTCGGGTCGTGCTTCCGT
CCTTCTACTCCCGCGTCCTCGTCTCTCCCTCCGCTGTGTCTCTCTCCCTC
CCTGCCTCCCCCGCTGGGATAACCAAGGCCGGCGAGTGGATGGAGGCCCA
CGTCTCCCGCTGGTTGGGCTGGTGCGAGAGCGCGAAGGAGGTAGACCGGA
TGAAGAGGGGATTGCTGCTTTCGAGGGACAACGGAGTGCGGCGGACGTGG
GTCGAGGGCACGGCCGGGGGGCTGGAAGTGTTTGTGGGAGGGAGGGAGGG
AGGGAAGGCCTTGGCGAAGCAGGCGGCGATTGCGATGAGTGGCCCGCAGC
AGGAGGCGTACGTGGGAGGGAGGGAGGAGAGGGGGAGAGGCCGATGGTGA

Synonyms

Publications