|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 670692 |
| Track | FilteredModels2 |
| ProteinId | 670606 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_9 | supercontig | scaffold_9:917104..918962 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_4890 ID=mRNA_4890|Name=jgi.p|Nanoce1779_2|670606|organism=Nannochloropsis oceanica|type=mRNA|length=1438bp
CAGCGCCGCCTGGTGTCTACACTTCACTTTCCTGGCTACGACCCGACGTG
GACTTCCCTGTCAGATCTACTAATGTGTGGCCGAACCCGCTGTTCTTGCA
CAATATCTACCGTTGCGGCTACCTATGGTGTATCTCCACAGCGTATGTAC
GGCGGGGACCGATTTCAGCCTCGGCATAACCTGCACCCTGGACACCAATC
TCCGGTCATTGTCCGTGATGCAAGTTACAAAAAGTACCAGCCCCATCAGG
CAAGGCACGAAGGAGACCAAGAGGGCGAAGGCGGCGGAGAAGGAAGAGAG
TCCGCTAAAGCAAATAGGAAAAACAAGGATGAAGAAGGTCAAGACGAGGG
GGACGCGAGGGCACTGGTTGTGATGCATTGGGGTTTGATCCCGTCATGGC
ATAAGGAGGGAGAGAAGCTGGATTTTTTCAGGGCGTTCAATGCGCGCAGT
GAGACTATTGATTCAAAGCCCATGTTCAGGCGCCTGGTCAGTGGCAAGCG
CTGTATCGTCTGCATGGAAGGCTTCTACGAATGGAGGAAGGACTTGAAGG
GGGCCAAGCAACCCTACTACTGCCACTCCTCCGATCCGTCTCGATCCCTC
CTCTCCCTGGCCGGGCTGTATGACACGTGGTTCCACAAGAAGAAGGGTAG
GGCAGGAAAGGATGATGAGGAGAAGGAGGTGATGTATTCGTACACGATTC
TAACGACGGACGCCTCCCCTTCGTTTTCCTGGCTCCACAACCGAATGCCT
GTAATTTTGCAGAACGAGGAGGAGGAGAAGGCATGGCTGGATGGAGGGAA
TGTTGGAGAGATTTTGTCGGTATTAAGGGGAGAGGGAGGGAAGGAGGGGG
GTAGGGAGGTTCCTTTCTTGGTGTGTGAGCCTGTGAGCAAGCGGATGAGT
AACATGCAGTACGAGGGAGAGGATTGCGCAGTGCCTATAAAGCTTGAAGA
GGAAGAGGAAGAAGAGAAGAGGGGAGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGCGAGGGAGGAGGAGGCGAGGGAGGAGGAGGACGAC
GGATGAAGATGGGGAAGAAACGAGCAAACAGGGAGCATGCAGAGGAGGTT
TTGAGCTATTCTTCTGGTGGGAGTGGGAAGAAAAGAGAAGGAGGAAAAAG
AGATATTGATAGTGAAGGGAATAAGGGGGAGCGGAAAAGTGCTGACAAGC
GACAGAAGACCATGACAAGCTTTTTCCCCCAAAAATGACTTTAAAGAAGA
CGGAGGAAGGCCCGTGCGAACGAAGTGATACACAGAGACAAAGGAGGGAA
TACTGTCGAAGGGGAAGTACGACGATAAAATATAAAAAGTTGTGCAAGGC
AAAAGATAAATAGCGAGGGGGTAAAGAAACGGGAGAAGAAGCAGACAGAC
AGCGGATGTACAGAAAGAATTTATTATCAAAAAATAAG back to topprotein sequence of jgi.p|Nanoce1779_2|670606 >mRNA_4890-protein ID=mRNA_4890-protein|Name=jgi.p|Nanoce1779_2|670606|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MCGRTRCSCTISTVAATYGVSPQRMYGGDRFQPRHNLHPGHQSPVIVRDA
SYKKYQPHQARHEGDQEGEGGGEGRESAKANRKNKDEEGQDEGDARALVV
MHWGLIPSWHKEGEKLDFFRAFNARSETIDSKPMFRRLVSGKRCIVCMEG
FYEWRKDLKGAKQPYYCHSSDPSRSLLSLAGLYDTWFHKKKGRAGKDDEE
KEVMYSYTILTTDASPSFSWLHNRMPVILQNEEEEKAWLDGGNVGEILSV
LRGEGGKEGGREVPFLVCEPVSKRMSNMQYEGEDCAVPIKLEEEEEEEKR
GEEEEEEEEEEEEEAREEEAREEEDDG* back to topmRNA from alignment at scaffold_9:917104..918962- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_4890 ID=mRNA_4890|Name=jgi.p|Nanoce1779_2|670606|organism=Nannochloropsis oceanica|type=mRNA|length=1859bp|location=Sequence derived from alignment at scaffold_9:917104..918962- (Nannochloropsis oceanica)
CAGCGCCGCCTGGTGTCTACACTTCACTTTCCTGGCTACGACCCGACGTG
GACTTCCCTGTCAGATCTACTAATGTGTGGCCGAACCCGCTGTTCTTGCA
CAATATCTACCGTTGCGGCTACCTATGGTGTATCTCCACAGCGTATGTAC
GGCGGGGACCGATTTCAGCCTCGGCATAACCTGCACCCTGGACACCAATC
TCCGGTCATTGTCCGTGATGCAAGTTACAAAAAGTACCAGCCCCATCAGG
CAAGGCACGAAGGAGACCAAGAGGGCGAAGGCGGCGGAGAAGGAAGAGAG
TCCGCTAAAGCAAATAGGAAAAACAAGGATGAAGAAGGTCAAGACGAGGG
GGACGCGAGGGCACTGGTTGTGATGCATTGGGGTTTGATCCCGTCATGGC
ATAAGGAGGGAGAGAAGCTGGATTTTTTCAGGGCGTTCAATGCGCGCAGT
GAGACTATTGATTCAAAGCCCATGTTCAGGCGCCTGGTCAGTGGCAAGCG
CTGTATCGTCTGCATGGTACGTGTATATGTTCGCCTTGGTCTCCCGCCCT
CCTTCCCAACTATTCCTCACCTATTTCTTCTCCTCTCTCCCCCCCATTAC
ACACAGGAAGGCTTCTACGAATGGAGGAAGGTAAACTGATCGTGTCTCTC
TCTTTCCTCCCCTCCTCCTCCCCCGTCCATTTCCCGCGACATCTCACCTT
CCTCCCTAATTTTCCTCGTCCTCCAGGACTTGAAGGGGGCCAAGCAACCC
TACTACTGCCACTCCTCCGATCCGTCTCGATCCCTCCTCTCCCTGGCCGG
GCTGTATGACACGTGGTTCCACAAGAAGAAGGGTAGGGCAGGAAAGGATG
ATGAGGAGAAGGAGGTGATGTATTCGTACACGATTCTAACGACGGACGCC
TCCCCTTCGTTTTCCTGGCTCCACAACCGAATGCCTGTAATTTTGCAGAA
CGAGGAGGAGGAGAAGGCATGGCTGGATGGAGGGAATGTTGGAGAGATTT
TGTCGGTATTAAGGGGAGAGGGAGGGAAGGAGGGGGGTAGGGAGGTTCCT
TTCTTGGTGTGTGAGCCTGTGAGCAAGCGGATGAGTAACATGCAGTACGA
GGGAGAGGATTGCGCAGTGCCTATAAAGCTTGAAGAGGAAGAGGAAGAAG
AGAAGGTAGGGGGAGGGAAGGGGACATTGTATGCTTTTTTCGGGGAAGGA
AAAGAGGAAGGGAGGAATGAGGGTGAGGTTGAAGGAAAAGTACGGTCTAT
ATTCCGCTCGCCTGTCGCGGTTGGCAAGGGGATAGAGGAGGGGAAAGGAC
GTGAGAAGATGGTCAAGAAGGAGAAAAAAGAGGAGAAAGAGAAGAGAGAA
GGCGGAGACGAGGTGGAGATCTTGACTCCCAGAAAAATAGAGGGGAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGAGGGAGGAGGAG
GCGAGGGAGGAGGAGGACGACGGATGAAGATGGGGAAGAAACGAGCAAAC
AGGGAGCATGCAGAGGAGGTTTTGAGCTATTCTTCTGGTGGGAGTGGGAA
GAAAAGAGAAGGAGGAAAAAGAGATATTGATAGTGAAGGGAATAAGGGGG
AGCGGAAAAGTGCTGACAAGCGACAGAAGACCATGACAAGCTTTTTCCCC
CAAAAATGACTTTAAAGAAGACGGAGGAAGGCCCGTGCGAACGAAGTGAT
ACACAGAGACAAAGGAGGGAATACTGTCGAAGGGGAAGTACGACGATAAA
ATATAAAAAGTTGTGCAAGGCAAAAGATAAATAGCGAGGGGGTAAAGAAA
CGGGAGAAGAAGCAGACAGACAGCGGATGTACAGAAAGAATTTATTATCA
AAAAATAAG back to topCoding sequence (CDS) from alignment at scaffold_9:917104..918962- >mRNA_4890 ID=mRNA_4890|Name=jgi.p|Nanoce1779_2|670606|organism=Nannochloropsis oceanica|type=CDS|length=3936bp|location=Sequence derived from alignment at scaffold_9:917104..918962- (Nannochloropsis oceanica)
AGGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGAG
GGAGGAGGAGGCGAGGGAGGAGGAGGACGACGGATGAGACTTGAAGGGGG
CCAAGCAACCCTACTACTGCCACTCCTCCGATCCGTCTCGATCCCTCCTC
TCCCTGGCCGGGCTGTATGACACGTGGTTCCACAAGAAGAAGGGTAGGGC
AGGAAAGGATGATGAGGAGAAGGAGGTGATGTATTCGTACACGATTCTAA
CGACGGACGCCTCCCCTTCGTTTTCCTGGCTCCACAACCGAATGCCTGTA
ATTTTGCAGAACGAGGAGGAGGAGAAGGCATGGCTGGATGGAGGGAATGT
TGGAGAGATTTTGTCGGTATTAAGGGGAGAGGGAGGGAAGGAGGGGGGTA
GGGAGGTTCCTTTCTTGGTGTGTGAGCCTGTGAGCAAGCGGATGAGTAAC
ATGCAGTACGAGGGAGAGGATTGCGCAGTGCCTATAAAGCTTGAAGAGGA
AGAGGAAGAAGAGAAGGAAGGCTTCTACGAATGGAGGAAGATGTGTGGCC
GAACCCGCTGTTCTTGCACAATATCTACCGTTGCGGCTACCTATGGTGTA
TCTCCACAGCGTATGTACGGCGGGGACCGATTTCAGCCTCGGCATAACCT
GCACCCTGGACACCAATCTCCGGTCATTGTCCGTGATGCAAGTTACAAAA
AGTACCAGCCCCATCAGGCAAGGCACGAAGGAGACCAAGAGGGCGAAGGC
GGCGGAGAAGGAAGAGAGTCCGCTAAAGCAAATAGGAAAAACAAGGATGA
AGAAGGTCAAGACGAGGGGGACGCGAGGGCACTGGTTGTGATGCATTGGG
GTTTGATCCCGTCATGGCATAAGGAGGGAGAGAAGCTGGATTTTTTCAGG
GCGTTCAATGCGCGCAGTGAGACTATTGATTCAAAGCCCATGTTCAGGCG
CCTGGTCAGTGGCAAGCGCTGTATCGTCTGCATGAGGGGAGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCGAGGGAGGAGGAGGCGAGG
GAGGAGGAGGACGACGGATGAGACTTGAAGGGGGCCAAGCAACCCTACTA
CTGCCACTCCTCCGATCCGTCTCGATCCCTCCTCTCCCTGGCCGGGCTGT
ATGACACGTGGTTCCACAAGAAGAAGGGTAGGGCAGGAAAGGATGATGAG
GAGAAGGAGGTGATGTATTCGTACACGATTCTAACGACGGACGCCTCCCC
TTCGTTTTCCTGGCTCCACAACCGAATGCCTGTAATTTTGCAGAACGAGG
AGGAGGAGAAGGCATGGCTGGATGGAGGGAATGTTGGAGAGATTTTGTCG
GTATTAAGGGGAGAGGGAGGGAAGGAGGGGGGTAGGGAGGTTCCTTTCTT
GGTGTGTGAGCCTGTGAGCAAGCGGATGAGTAACATGCAGTACGAGGGAG
AGGATTGCGCAGTGCCTATAAAGCTTGAAGAGGAAGAGGAAGAAGAGAAG
GAAGGCTTCTACGAATGGAGGAAGATGTGTGGCCGAACCCGCTGTTCTTG
CACAATATCTACCGTTGCGGCTACCTATGGTGTATCTCCACAGCGTATGT
ACGGCGGGGACCGATTTCAGCCTCGGCATAACCTGCACCCTGGACACCAA
TCTCCGGTCATTGTCCGTGATGCAAGTTACAAAAAGTACCAGCCCCATCA
GGCAAGGCACGAAGGAGACCAAGAGGGCGAAGGCGGCGGAGAAGGAAGAG
AGTCCGCTAAAGCAAATAGGAAAAACAAGGATGAAGAAGGTCAAGACGAG
GGGGACGCGAGGGCACTGGTTGTGATGCATTGGGGTTTGATCCCGTCATG
GCATAAGGAGGGAGAGAAGCTGGATTTTTTCAGGGCGTTCAATGCGCGCA
GTGAGACTATTGATTCAAAGCCCATGTTCAGGCGCCTGGTCAGTGGCAAG
CGCTGTATCGTCTGCATGAGGGGAGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGCGAGGGAGGAGGAGGCGAGGGAGGAGGAGGACGACG
GATGAGACTTGAAGGGGGCCAAGCAACCCTACTACTGCCACTCCTCCGAT
CCGTCTCGATCCCTCCTCTCCCTGGCCGGGCTGTATGACACGTGGTTCCA
CAAGAAGAAGGGTAGGGCAGGAAAGGATGATGAGGAGAAGGAGGTGATGT
ATTCGTACACGATTCTAACGACGGACGCCTCCCCTTCGTTTTCCTGGCTC
CACAACCGAATGCCTGTAATTTTGCAGAACGAGGAGGAGGAGAAGGCATG
GCTGGATGGAGGGAATGTTGGAGAGATTTTGTCGGTATTAAGGGGAGAGG
GAGGGAAGGAGGGGGGTAGGGAGGTTCCTTTCTTGGTGTGTGAGCCTGTG
AGCAAGCGGATGAGTAACATGCAGTACGAGGGAGAGGATTGCGCAGTGCC
TATAAAGCTTGAAGAGGAAGAGGAAGAAGAGAAGGAAGGCTTCTACGAAT
GGAGGAAGATGTGTGGCCGAACCCGCTGTTCTTGCACAATATCTACCGTT
GCGGCTACCTATGGTGTATCTCCACAGCGTATGTACGGCGGGGACCGATT
TCAGCCTCGGCATAACCTGCACCCTGGACACCAATCTCCGGTCATTGTCC
GTGATGCAAGTTACAAAAAGTACCAGCCCCATCAGGCAAGGCACGAAGGA
GACCAAGAGGGCGAAGGCGGCGGAGAAGGAAGAGAGTCCGCTAAAGCAAA
TAGGAAAAACAAGGATGAAGAAGGTCAAGACGAGGGGGACGCGAGGGCAC
TGGTTGTGATGCATTGGGGTTTGATCCCGTCATGGCATAAGGAGGGAGAG
AAGCTGGATTTTTTCAGGGCGTTCAATGCGCGCAGTGAGACTATTGATTC
AAAGCCCATGTTCAGGCGCCTGGTCAGTGGCAAGCGCTGTATCGTCTGCA
TGAGGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCG
AGGGAGGAGGAGGCGAGGGAGGAGGAGGACGACGGATGAGACTTGAAGGG
GGCCAAGCAACCCTACTACTGCCACTCCTCCGATCCGTCTCGATCCCTCC
TCTCCCTGGCCGGGCTGTATGACACGTGGTTCCACAAGAAGAAGGGTAGG
GCAGGAAAGGATGATGAGGAGAAGGAGGTGATGTATTCGTACACGATTCT
AACGACGGACGCCTCCCCTTCGTTTTCCTGGCTCCACAACCGAATGCCTG
TAATTTTGCAGAACGAGGAGGAGGAGAAGGCATGGCTGGATGGAGGGAAT
GTTGGAGAGATTTTGTCGGTATTAAGGGGAGAGGGAGGGAAGGAGGGGGG
TAGGGAGGTTCCTTTCTTGGTGTGTGAGCCTGTGAGCAAGCGGATGAGTA
ACATGCAGTACGAGGGAGAGGATTGCGCAGTGCCTATAAAGCTTGAAGAG
GAAGAGGAAGAAGAGAAGGAAGGCTTCTACGAATGGAGGAAGATGTGTGG
CCGAACCCGCTGTTCTTGCACAATATCTACCGTTGCGGCTACCTATGGTG
TATCTCCACAGCGTATGTACGGCGGGGACCGATTTCAGCCTCGGCATAAC
CTGCACCCTGGACACCAATCTCCGGTCATTGTCCGTGATGCAAGTTACAA
AAAGTACCAGCCCCATCAGGCAAGGCACGAAGGAGACCAAGAGGGCGAAG
GCGGCGGAGAAGGAAGAGAGTCCGCTAAAGCAAATAGGAAAAACAAGGAT
GAAGAAGGTCAAGACGAGGGGGACGCGAGGGCACTGGTTGTGATGCATTG
GGGTTTGATCCCGTCATGGCATAAGGAGGGAGAGAAGCTGGATTTTTTCA
GGGCGTTCAATGCGCGCAGTGAGACTATTGATTCAAAGCCCATGTTCAGG
CGCCTGGTCAGTGGCAAGCGCTGTATCGTCTGCATG back to top
|