jgi.p|Nanoce1779_2|577454, mRNA_489 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577454
Unique NamemRNA_489
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1387
Alignment locationscaffold_3:1182172..1183683 +

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Properties
Property NameValue
TranscriptId577540
TrackFilteredModels2
ProteinId577454
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1182172..1183683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577454gene_489Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577454mRNA_489-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_489CDS_489Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_489 ID=mRNA_489|Name=jgi.p|Nanoce1779_2|577454|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
GTTGGAATTGCCAGGGGGTGGAAGGGAAGTGGGAAGGGAGGGAGGGAGGG
AGGGGACGGAAAAAAGAGAGAAGGAGGAGTGGGCTTGAAAAGAGAGACAT
GGCGTGGTTTTGGAGACGTTCGCCAGAATAGAGGCATGCAACGACGAACA
AAATGCCCTCCGAAAAGATGAAACAAGCTCGTTAGCATGTTTGTACATAC
ATAAATATGTAACTTTGTTTCCCGGGCCGATCAAAGATGGCAGACCCAAG
GCAAGTATTATGTAGAAAAAGATAACTCATGATCAAGATAACGCGCAATA
GCCTCACAGAAGTGTAAGACCAAGCCAAAATATAAACGAATGGCAAGGGA
ACACACACAAGGCATGCATGCTTACGATCAGCCGGGTCTTTGCAGGGCGA
AAATGGGAAGATGCGCTTGCTTCCATTCAATGCCAGGAAAGGGTCAGAAG
GAACACCACCTTTACTTGCCGTATCGTGCCTGGTCTTGTCCTCTGAACGA
GCATATGAGTGTACCTCGGGGAGGATCTTTATGTGCAGGAATATCGATTG
AATCAATGCCAGCAAAAGTCAAGACAGGGAGAAAGATAACGGCCCTCCCT
GCCACTCTCATTATATACCAAGCAACAAACTTTTCGTTTTACTTTTTCTG
GGAAAGTCGGGATGATATTTCGGTGGAGAGGCAAATGACAGACCCATTCA
TTAAGGCCTCAGCAGGACGCGACTGGCAGCTTATCCAAGACAACTCATGC
TCTCCTGCGTGCCTTCCCTCCATCACATCCTTTTCCTCTACCCAACCATG
CTCATTCATTCCTCTGTTTTTTGGTTTTTATTTTTTTATTTTTTCTCAAT
CAAAGGGTTCCTATTTATCTGTTCGCCTGTTTGTTTTTAGGAGCGTACCC
TGTATAAGTCCTGCGTGCGTGTGTGTGCGCGCTCCATCTCTACAAAAATC
ACACTCAACTTAATGACAAGCAGGACTTCCCAAAATTCAGAGGAGAGTGG
AAAACAGACGCTACGACATAGCCTGCCTCTTTTGCTCCCTTCCCTTGCTG
TACGTACTCTTCTGTACAACTTTCTCCCTTTTTTCCCTTTCGGCCCTCGC
TTTCCCCCTCCTTCTCGCACGGAATAAAGCCTCGTCCCTTGAGCGTACGC
TCTCTTACCGTTCTCTCCGTTAATCATCCACAAGCTCCTTCTGCTCTCGC
CGACATGCGTATCAGTGTGTCGTTGTGTGTGCATGTCTTCTTCTCTTCAT
CTCATTGTCCCTCTTTCATCACTTCCTCCTATCCGCAGCATTTAATCCCC
CCAATATTCCTTTCCTCCCCTCCTCGCTTCACTTACGCCTTAACCCCCTC
CGACGTCACTGTCGTCAACTCCGCCCCTCCCTCCGCC
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protein sequence of jgi.p|Nanoce1779_2|577454

>mRNA_489-protein ID=mRNA_489-protein|Name=jgi.p|Nanoce1779_2|577454|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MAREHTQGMHAYDQPGLCRAKMGRCACFHSMPGKGQKEHHLYLPYRAWSC
PLNEHMSVPRGGSLCAGISIESMPAKVKTGRKITALPATLIIYQATNFSF
YFFWESRDDISVERQMTDPFIKASAGRDWQLIQDNSCSPACLPSITSFSS
TQPCSFIPLFFGFYFFIFSQSKGSYLSVRLFVFRSVPCISPACVCVRAPS
LQKSHST*
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mRNA from alignment at scaffold_3:1182172..1183683+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_489 ID=mRNA_489|Name=jgi.p|Nanoce1779_2|577454|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at scaffold_3:1182172..1183683+ (Nannochloropsis oceanica)
GTTGGAATTGCCAGGGGGTGGAAGGGAAGTGGGAAGGGAGGGAGGGAGGG
AGGGGACGGAAAAAAGAGAGAAGGAGGAGTGGGCTTGAAAAGAGAGACAT
GGCGTGGTTTTGGAGACGTTCGCCAGAATAGAGGCATGCAACGACGAACA
AAATGCCCTCCGAAAAGATGAAACAAGCTCGTTAGCATGTTTGTACATAC
ATAAATATGTAACTTTGTTTCCCGGGCCGATCAAAGATGGCAGACCCAAG
GCAAGTATTATGTAGAAAAAGATAACTCATGATCAAGATAACGCGCAATA
GCCTCACAGAAGTGTAAGACCAAGCCAAAATATAAACGAATGGCAAGGGA
ACACACACAAGGCATGCATGCTTACGATCAGCCGGGTCTTTGCAGGGCGA
AAATGGGAAGATGCGCTTGCTTCCATTCAATGCCAGGAAAGGGTCAGAAG
GAACACCACCTTTACTTGCCGTATCGTGCCTGGTCTTGTCCTCTGAACGA
GCATATGAGTGTACCTCGGGGAGGATCTTTATGTGGTGAGTGCCGAAGCA
GGCCTACACGGCGCCGAACATGTACGCCTTTGTCAGCCCTCCTCACTTAT
TGTTCTTATCGCAGACTCAAAAAATAAGCCACTCAAACAGTCATGTCACA
TACAACAAAGCAGGAATATCGATTGAATCAATGCCAGCAAAAGTCAAGAC
AGGGAGAAAGATAACGGCCCTCCCTGCCACTCTCATTATATACCAAGCAA
CAAACTTTTCGTTTTACTTTTTCTGGGAAAGTCGGGATGATATTTCGGTG
GAGAGGCAAATGACAGACCCATTCATTAAGGCCTCAGCAGGACGCGACTG
GCAGCTTATCCAAGACAACTCATGCTCTCCTGCGTGCCTTCCCTCCATCA
CATCCTTTTCCTCTACCCAACCATGCTCATTCATTCCTCTGTTTTTTGGT
TTTTATTTTTTTATTTTTTCTCAATCAAAGGGTTCCTATTTATCTGTTCG
CCTGTTTGTTTTTAGGAGCGTACCCTGTATAAGTCCTGCGTGCGTGTGTG
TGCGCGCTCCATCTCTACAAAAATCACACTCAACTTAATGACAAGCAGGA
CTTCCCAAAATTCAGAGGAGAGTGGAAAACAGACGCTACGACATAGCCTG
CCTCTTTTGCTCCCTTCCCTTGCTGTACGTACTCTTCTGTACAACTTTCT
CCCTTTTTTCCCTTTCGGCCCTCGCTTTCCCCCTCCTTCTCGCACGGAAT
AAAGCCTCGTCCCTTGAGCGTACGCTCTCTTACCGTTCTCTCCGTTAATC
ATCCACAAGCTCCTTCTGCTCTCGCCGACATGCGTATCAGTGTGTCGTTG
TGTGTGCATGTCTTCTTCTCTTCATCTCATTGTCCCTCTTTCATCACTTC
CTCCTATCCGCAGCATTTAATCCCCCCAATATTCCTTTCCTCCCCTCCTC
GCTTCACTTACGCCTTAACCCCCTCCGACGTCACTGTCGTCAACTCCGCC
CCTCCCTCCGCC
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Coding sequence (CDS) from alignment at scaffold_3:1182172..1183683+

>mRNA_489 ID=mRNA_489|Name=jgi.p|Nanoce1779_2|577454|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_3:1182172..1183683+ (Nannochloropsis oceanica)
ATGGCAAGGGAACACACACAAGGCATGCATGCTTACGATCAGCCGGGTCT
TTGCAGGGCGAAAATGGGAAGATGCGCTTGCTTCCATTCAATGCCAGGAA
AGGGTCAGAAGGAACACCACCTTTACTTGCCGTATCGTGCCTGGTCTTGT
CCTCTGAACGAGCATATGAGTGTACCTCGGGGAGGATCTTTATGTGCAGG
AATATCGATTGAATCAATGCCAGCAAAAGTCAAGACAGGGAGAAAGATAA
CGGCCCTCCCTGCCACTCTCATTATATACCAAGCAACAAACTTTTCGTTT
TACTTTTTCTGGGAAAGTCGGGATGATATTTCGGTGGAGAGGCAAATGAC
AGACCCATTCATTAAGGCCTCAGCAGGACGCGACTGGCAGCTTATCCAAG
ACAACTCATGCTCTCCTGCGTGCCTTCCCTCCATCACATCCTTTTCCTCT
ACCCAACCATGCTCATTCATTCCTCTGTTTTTTGGTTTTTATTTTTTTAT
TTTTTCTCAATCAAAGGGTTCCTATTTATCTGTTCGCCTGTTTGTTTTTA
GGAGCGTACCCTGTATAAGTCCTGCGTGCGTGTGTGTGCGCGCTCCATCT
CTACAAAAATCACACTCAACTTAAATGGCAAGGGAACACACACAAGGCAT
GCATGCTTACGATCAGCCGGGTCTTTGCAGGGCGAAAATGGGAAGATGCG
CTTGCTTCCATTCAATGCCAGGAAAGGGTCAGAAGGAACACCACCTTTAC
TTGCCGTATCGTGCCTGGTCTTGTCCTCTGAACGAGCATATGAGTGTACC
TCGGGGAGGATCTTTATGTGCAGGAATATCGATTGAATCAATGCCAGCAA
AAGTCAAGACAGGGAGAAAGATAACGGCCCTCCCTGCCACTCTCATTATA
TACCAAGCAACAAACTTTTCGTTTTACTTTTTCTGGGAAAGTCGGGATGA
TATTTCGGTGGAGAGGCAAATGACAGACCCATTCATTAAGGCCTCAGCAG
GACGCGACTGGCAGCTTATCCAAGACAACTCATGCTCTCCTGCGTGCCTT
CCCTCCATCACATCCTTTTCCTCTACCCAACCATGCTCATTCATTCCTCT
GTTTTTTGGTTTTTATTTTTTTATTTTTTCTCAATCAAAGGGTTCCTATT
TATCTGTTCGCCTGTTTGTTTTTAGGAGCGTACCCTGTATAAGTCCTGCG
TGCGTGTGTGTGCGCGCTCCATCTCTACAAAAATCACACTCAACTTAA
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Synonyms
Publications