jgi.p|Nanoce1779_2|588250, mRNA_4888 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|588250
Unique NamemRNA_4888
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length685
Alignment locationscaffold_9:900340..901207 +

Link to JBrowse

Properties
Property NameValue
TranscriptId588336
TrackFilteredModels2
ProteinId588250
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:900340..901207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588250gene_4888Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|588250mRNA_4888-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4888CDS_4888Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4888 ID=mRNA_4888|Name=jgi.p|Nanoce1779_2|588250|organism=Nannochloropsis oceanica|type=mRNA|length=685bp
ACAGCGCAGCGTCATGACAACGACGGAGAGTACAACAATAAGCCGACGGC
GGCTTCCGTGGGCGCAATGCCATTTCCGAGGACAGGACTTGATATGCCTG
GGTGTGGGCAACGAAGCCCTCATTATTGACGGAGCGTCGCGCCTGGAACT
TCAACGCGTGTCCAATGGATGCGAGAGACGAAAGAAGCAGCAGCAGCAGC
TACAGCAACAGCAGCTGACAGCAGAGGAAGAAGAGGAGGTGGCCGGGGTC
TTAGCAGAGGCGGTGGCTGAGGGAGAAGAAGAGAGGGATGATGCCGTCGT
GGGCGTGGCATGGGGGGACGCGCGCGGCGTTTTGGCGGCGCTGTGGGAGA
GCGGCACTCTGGCTATTGCCGAGAACCCAACCGCGACGGGTGCATGGTCT
GTGGTGAGCTGGTTTCATATTCGTAACGCCGAGGAGGAGTACGAGAAGGA
GGAGAAGGGTGGCGACGGGGAAAGGCACGGGGCGGAGAAGGAGAAAGAGA
AGGGAAAGAGGAAGAAGAGGGGGCCGCTGATCCCACTGGACGCGTCGGTG
ACGTTGAGCTGGTCCAGCCACGCGCTGCTTCTGGCTTGGGGTCGCTCTCT
TCAGGTTTTTGCCTTCTATGACTGGCACGAGCGGGCCATGAAGAGTGGTG
GAGGGAGCGGGGGAGGAGGAGGAGGAGGAGGAGGC
back to top

protein sequence of jgi.p|Nanoce1779_2|588250

>mRNA_4888-protein ID=mRNA_4888-protein|Name=jgi.p|Nanoce1779_2|588250|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MTTTESTTISRRRLPWAQCHFRGQDLICLGVGNEALIIDGASRLELQRVS
NGCERRKKQQQQLQQQQLTAEEEEEVAGVLAEAVAEGEEERDDAVVGVAW
GDARGVLAALWESGTLAIAENPTATGAWSVVSWFHIRNAEEEYEKEEKGG
DGERHGAEKEKEKGKRKKRGPLIPLDASVTLSWSSHALLLAWGRSLQVFA
FYDWHERAMKSGGGSGGGGGGGGG
back to top

mRNA from alignment at scaffold_9:900340..901207+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4888 ID=mRNA_4888|Name=jgi.p|Nanoce1779_2|588250|organism=Nannochloropsis oceanica|type=mRNA|length=868bp|location=Sequence derived from alignment at scaffold_9:900340..901207+ (Nannochloropsis oceanica)
ACAGCGCAGCGTCATGACAACGACGGAGAGTACAACAATAAGCCGACGGC
GGCTTCCGTGGGCGCAATGCCATTTCCGAGGACAGGTGCGTAGGAATGGA
ATGCATATGGTTTTGTGAAGAAGGCACCGTCCCGAACCCCCGTGCGGTGC
TTCCTTCTCCTTCCCCCATCCCACGATTTACACTCTGCTCTCCCCTTCTT
CTACATATATTCTTACGCTGACATGCCCCATTTCTCTTTCCCACTCTTCT
TTCGCATCGGTTCCAAAGGACTTGATATGCCTGGGTGTGGGCAACGAAGC
CCTCATTATTGACGGAGCGTCGCGCCTGGAACTTCAACGCGTGTCCAATG
GATGCGAGAGACGAAAGAAGCAGCAGCAGCAGCTACAGCAACAGCAGCTG
ACAGCAGAGGAAGAAGAGGAGGTGGCCGGGGTCTTAGCAGAGGCGGTGGC
TGAGGGAGAAGAAGAGAGGGATGATGCCGTCGTGGGCGTGGCATGGGGGG
ACGCGCGCGGCGTTTTGGCGGCGCTGTGGGAGAGCGGCACTCTGGCTATT
GCCGAGAACCCAACCGCGACGGGTGCATGGTCTGTGGTGAGCTGGTTTCA
TATTCGTAACGCCGAGGAGGAGTACGAGAAGGAGGAGAAGGGTGGCGACG
GGGAAAGGCACGGGGCGGAGAAGGAGAAAGAGAAGGGAAAGAGGAAGAAG
AGGGGGCCGCTGATCCCACTGGACGCGTCGGTGACGTTGAGCTGGTCCAG
CCACGCGCTGCTTCTGGCTTGGGGTCGCTCTCTTCAGGTTTTTGCCTTCT
ATGACTGGCACGAGCGGGCCATGAAGAGTGGTGGAGGGAGCGGGGGAGGA
GGAGGAGGAGGAGGAGGC
back to top

Coding sequence (CDS) from alignment at scaffold_9:900340..901207+

>mRNA_4888 ID=mRNA_4888|Name=jgi.p|Nanoce1779_2|588250|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_9:900340..901207+ (Nannochloropsis oceanica)
ATGACAACGACGGAGAGTACAACAATAAGCCGACGGCGGCTTCCGTGGGC
GCAATGCCATTTCCGAGGACAGGACTTGATATGCCTGGGTGTGGGCAACG
AAGCCCTCATTATTGACGGAGCGTCGCGCCTGGAACTTCAACGCGTGTCC
AATGGATGCGAGAGACGAAAGAAGCAGCAGCAGCAGCTACAGCAACAGCA
GCTGACAGCAGAGGAAGAAGAGGAGGTGGCCGGGGTCTTAGCAGAGGCGG
TGGCTGAGGGAGAAGAAGAGAGGGATGATGCCGTCGTGGGCGTGGCATGG
GGGGACGCGCGCGGCGTTTTGGCGGCGCTGTGGGAGAGCGGCACTCTGGC
TATTGCCGAGAACCCAACCGCGACGGGTGCATGGTCTGTGGTGAGCTGGT
TTCATATTCGTAACGCCGAGGAGGAGTACGAGAAGGAGGAGAAGGGTGGC
GACGGGGAAAGGCACGGGGCGGAGAAGGAGAAAGAGAAGGGAAAGAGGAA
GAAGAGGGGGCCGCTGATCCCACTGGACGCGTCGGTGACGTTGAGCTGGT
CCAGCCACGCGCTGCTTCTGGCTTGGGGTCGCTCTCTTCAGGTTTTTGCC
TTCTATGACTGGCACGAGCGGGCCATGAAGAGTGGTGGAGGGAGCGGGGG
AGGAGGAGGAGGAGGAGGAGGCATGACAACGACGGAGAGTACAACAATAA
GCCGACGGCGGCTTCCGTGGGCGCAATGCCATTTCCGAGGACAGGACTTG
ATATGCCTGGGTGTGGGCAACGAAGCCCTCATTATTGACGGAGCGTCGCG
CCTGGAACTTCAACGCGTGTCCAATGGATGCGAGAGACGAAAGAAGCAGC
AGCAGCAGCTACAGCAACAGCAGCTGACAGCAGAGGAAGAAGAGGAGGTG
GCCGGGGTCTTAGCAGAGGCGGTGGCTGAGGGAGAAGAAGAGAGGGATGA
TGCCGTCGTGGGCGTGGCATGGGGGGACGCGCGCGGCGTTTTGGCGGCGC
TGTGGGAGAGCGGCACTCTGGCTATTGCCGAGAACCCAACCGCGACGGGT
GCATGGTCTGTGGTGAGCTGGTTTCATATTCGTAACGCCGAGGAGGAGTA
CGAGAAGGAGGAGAAGGGTGGCGACGGGGAAAGGCACGGGGCGGAGAAGG
AGAAAGAGAAGGGAAAGAGGAAGAAGAGGGGGCCGCTGATCCCACTGGAC
GCGTCGGTGACGTTGAGCTGGTCCAGCCACGCGCTGCTTCTGGCTTGGGG
TCGCTCTCTTCAGGTTTTTGCCTTCTATGACTGGCACGAGCGGGCCATGA
AGAGTGGTGGAGGGAGCGGGGGAGGAGGAGGAGGAGGAGGAGGC
back to top
Synonyms
Publications